junifer 0.0.6.dev119__tar.gz → 0.0.6.dev145__tar.gz

{junifer-0.0.6.dev119 → junifer-0.0.6.dev145}/.github/dependabot.yml

@@ -1,10 +1,14 @@
 # Set update schedule for GitHub Actions
-
 version: 2
 updates:
-
   - package-ecosystem: "github-actions"
     directory: "/"
     schedule:
       # Check for updates to GitHub Actions every week
       interval: "weekly"
+    # Group updates to avoid extra PRs
+    groups:
+      # Group name
+      actions:
+        patterns:
+          - "*"

junifer-0.0.6.dev145/.github/workflows/docs-preview.yml

@@ -0,0 +1,63 @@
+name: Build and preview docs
+
+on:
+  push:
+    branches-ignore:
+      - 'main'
+    tags-ignore:
+      - v*
+  pull_request:
+    types:
+      - opened
+      - reopened
+      - synchronize
+      - closed
+
+concurrency: preview-${{ github.ref }}
+
+jobs:
+  build-docs:
+    runs-on: ubuntu-latest
+    # Use custom docs CI image
+    container: ghcr.io/juaml/junifer-docs:main
+    steps:
+    - name: Check ANTs
+      run: |
+        echo "Using ANTs : $(antsRegistration --version)"
+    - name: Install system dependencies
+      run: |
+        # actions/checkout fails to identify Git as it's not in the CI image
+        apt-get -qq update && \
+        apt-get -qq install -y \
+        git \
+        git-annex \
+        make \
+        jq
+        # Copy xfms directory
+        mkdir -p $HOME/junifer/data/xfms && \
+        cp -ar /root/junifer/data/xfms/. $HOME/junifer/data/xfms/
+    - name: Checkout source
+      uses: actions/checkout@v4
+      with:
+        fetch-depth: 0
+        submodules: true
+    - name: Set up Python
+      uses: actions/setup-python@v5
+      with:
+        python-version: "3.x"
+    - name: Install Python dependencies
+      run: |
+        python -m pip install --upgrade pip setuptools wheel
+        python -m pip install -e ".[docs,neurokit2]"
+    - name: Configure Git for DataLad
+      run: |
+        git config --global user.email "junifer-runner@github.com"
+        git config --global user.name "GitHub Runner"
+    - name: Test build docs
+      run: |
+        BUILDDIR=_build/main make -C docs/ local
+    - name: Deploy preview
+      if: github.event_name == 'pull_request'
+      uses: rossjrw/pr-preview-action@v1
+      with:
+        source-dir: docs/_build/main

{junifer-0.0.6.dev119 → junifer-0.0.6.dev145}/.github/workflows/docs.yml

@@ -12,7 +12,24 @@ on:
 jobs:
   build-docs:
     runs-on: ubuntu-latest
+    # Use custom docs CI image
+    container: ghcr.io/juaml/junifer-docs:main
     steps:
+    - name: Check ANTs
+      run: |
+        echo "Using ANTs : $(antsRegistration --version)"
+    - name: Install system dependencies
+      run: |
+        # actions/checkout fails to identify Git as it's not in the CI image
+        apt-get -qq update && \
+        apt-get -qq install -y \
+        git \
+        git-annex \
+        make \
+        jq
+        # Copy xfms directory
+        mkdir -p $HOME/junifer/data/xfms && \
+        cp -ar /root/junifer/data/xfms/. $HOME/junifer/data/xfms/
     - name: Checkout source
       uses: actions/checkout@v4
       with:
@@ -23,37 +40,15 @@ jobs:
       uses: actions/setup-python@v5
       with:
         python-version: "3.x"
-    - name: Check for sudo
-      shell: bash
-      run: |
-        if type sudo >/dev/null 2>&1; then SUDO="sudo"; else SUDO=""; fi
-        echo "SUDO=$SUDO" >> $GITHUB_ENV
-    - name: Install dependencies
+    - name: Install Python dependencies
       run: |
-        $SUDO bash -c "$(curl -fsSL http://neuro.debian.net/_files/neurodebian-travis.sh)"
-        $SUDO apt-get update -qq
-        $SUDO apt-get install git-annex-standalone
         python -m pip install --upgrade pip setuptools wheel
         python -m pip install -e ".[docs,neurokit2]"
         python -m pip install git+https://github.com/dls-controls/sphinx-multiversion@only-arg
-    - name: Configure git for datalad
+    - name: Configure Git for DataLad
       run: |
-        git config --global user.email "runner@github.com"
-        git config --global user.name "GITHUB CI Runner"
-    - name: Install ANTs
-      run: |
-        echo "++ Add universe repo"
-        sudo add-apt-repository -y universe
-
-        echo "++ Update package manager info"
-        sudo apt-get update -qq
-
-        echo "++ Downloading ANTs"
-        curl -fsSL -o ants.zip https://github.com/ANTsX/ANTs/releases/download/v2.5.1/ants-2.5.1-ubuntu-22.04-X64-gcc.zip
-        unzip ants.zip -d /opt
-        mv /opt/ants-2.5.1/bin/* /opt/ants-2.5.1
-        rm ants.zip
-        echo "/opt/ants-2.5.1" >> $GITHUB_PATH
+        git config --global user.email "junifer-runner@github.com"
+        git config --global user.name "GitHub Runner"
     - name: Checkout gh-pages
       # As we already did a deploy of gh-pages above, it is guaranteed to be there
       # so check it out so we can selectively build docs below

{junifer-0.0.6.dev119 → junifer-0.0.6.dev145}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: junifer
-Version: 0.0.6.dev119
+Version: 0.0.6.dev145
 Summary: JUelich NeuroImaging FEature extractoR
 Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
 Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>

junifer-0.0.6.dev145/docs/changes/newsfragments/374.misc

@@ -0,0 +1 @@
+Adopt usage of custom docs CI image for building and previewing docs actions by `Synchon Mandal`_

junifer-0.0.6.dev145/docs/changes/newsfragments/380.misc

@@ -0,0 +1 @@
+Update Dependabot GitHub Action to support groups by `Synchon Mandal`_

{junifer-0.0.6.dev119 → junifer-0.0.6.dev145}/junifer/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.0.6.dev119'
-__version_tuple__ = version_tuple = (0, 0, 6, 'dev119')
+__version__ = version = '0.0.6.dev145'
+__version_tuple__ = version_tuple = (0, 0, 6, 'dev145')

{junifer-0.0.6.dev119 → junifer-0.0.6.dev145}/junifer.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: junifer
-Version: 0.0.6.dev119
+Version: 0.0.6.dev145
 Summary: JUelich NeuroImaging FEature extractoR
 Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
 Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>

{junifer-0.0.6.dev119 → junifer-0.0.6.dev145}/junifer.egg-info/SOURCES.txt

@@ -76,6 +76,8 @@ docs/changes/newsfragments/369.bugfix
 docs/changes/newsfragments/370.bugfix
 docs/changes/newsfragments/372.misc
 docs/changes/newsfragments/373.misc
+docs/changes/newsfragments/374.misc
+docs/changes/newsfragments/380.misc
 docs/extending/coordinates.rst
 docs/extending/datagrabber.rst
 docs/extending/dependencies.rst

junifer-0.0.6.dev119/.github/workflows/docs-preview.yml

@@ -1,68 +0,0 @@
-name: Build and preview docs
-
-on:
-  push:
-    branches-ignore:
-      - 'main'
-    tags-ignore:
-      - v*
-  pull_request:
-    types:
-      - opened
-      - reopened
-      - synchronize
-      - closed
-
-concurrency: preview-${{ github.ref }}
-
-jobs:
-  build-docs:
-    runs-on: ubuntu-latest
-    steps:
-    - name: Checkout source
-      uses: actions/checkout@v4
-      with:
-        fetch-depth: 0
-        submodules: true
-    - name: Set up Python
-      uses: actions/setup-python@v5
-      with:
-        python-version: "3.x"
-    - name: Check for sudo
-      shell: bash
-      run: |
-        if type sudo >/dev/null 2>&1; then SUDO="sudo"; else SUDO=""; fi
-        echo "SUDO=$SUDO" >> $GITHUB_ENV
-    - name: Install dependencies
-      run: |
-        $SUDO bash -c "$(curl -fsSL http://neuro.debian.net/_files/neurodebian-travis.sh)"
-        $SUDO apt-get update -qq
-        $SUDO apt-get install git-annex-standalone
-        python -m pip install --upgrade pip setuptools wheel
-        python -m pip install -e ".[docs,neurokit2]"
-    - name: Configure git for datalad
-      run: |
-        git config --global user.email "runner@github.com"
-        git config --global user.name "GITHUB CI Runner"
-    - name: Install ANTs
-      run: |
-        echo "++ Add universe repo"
-        sudo add-apt-repository -y universe
-
-        echo "++ Update package manager info"
-        sudo apt-get update -qq
-
-        echo "++ Downloading ANTs"
-        curl -fsSL -o ants.zip https://github.com/ANTsX/ANTs/releases/download/v2.5.1/ants-2.5.1-ubuntu-22.04-X64-gcc.zip
-        unzip ants.zip -d /opt
-        mv /opt/ants-2.5.1/bin/* /opt/ants-2.5.1
-        rm ants.zip
-        echo "/opt/ants-2.5.1" >> $GITHUB_PATH
-    - name: Test build docs
-      run: |
-        BUILDDIR=_build/main make -C docs/ local
-    - name: Deploy preview
-      if: github.event_name == 'pull_request'
-      uses: rossjrw/pr-preview-action@v1
-      with:
-        source-dir: docs/_build/main