junifer 0.0.5.dev33__tar.gz → 0.0.5.dev39__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (374) hide show
  1. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/PKG-INFO +1 -1
  2. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/api/nilearn.rst +0 -2
  3. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/api/onthefly.rst +0 -2
  4. junifer-0.0.5.dev39/docs/changes/newsfragments/115.doc +1 -0
  5. junifer-0.0.5.dev39/docs/changes/newsfragments/330.doc +1 -0
  6. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/_version.py +2 -2
  7. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/__init__.py +1 -1
  8. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/queue_context/__init__.py +1 -1
  9. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/configs/__init__.py +1 -1
  10. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/configs/juseless/__init__.py +1 -1
  11. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/configs/juseless/datagrabbers/__init__.py +1 -1
  12. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/data/__init__.py +1 -1
  13. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/data/coordinates.py +1 -1
  14. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/data/masks.py +1 -1
  15. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/data/parcellations.py +1 -1
  16. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/data/template_spaces.py +1 -1
  17. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/datagrabber/__init__.py +1 -1
  18. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/datagrabber/aomic/id1000.py +3 -2
  19. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/datagrabber/aomic/piop1.py +3 -2
  20. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/datagrabber/aomic/piop2.py +3 -2
  21. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/datagrabber/dmcc13_benchmark.py +3 -2
  22. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/datareader/__init__.py +1 -1
  23. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/external/__init__.py +1 -1
  24. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/external/nilearn/__init__.py +1 -1
  25. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/markers/__init__.py +1 -1
  26. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/onthefly/__init__.py +1 -1
  27. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/pipeline/__init__.py +1 -1
  28. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/preprocess/__init__.py +1 -1
  29. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/stats.py +1 -1
  30. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/storage/__init__.py +1 -1
  31. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/testing/__init__.py +1 -1
  32. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/testing/datagrabbers.py +1 -1
  33. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/utils/__init__.py +1 -1
  34. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer.egg-info/PKG-INFO +1 -1
  35. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer.egg-info/SOURCES.txt +2 -0
  36. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/.github/ISSUE_TEMPLATE/bug-report.yml +0 -0
  37. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/.github/ISSUE_TEMPLATE/config.yml +0 -0
  38. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/.github/ISSUE_TEMPLATE/dataset-request.yml +0 -0
  39. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/.github/ISSUE_TEMPLATE/documention-request.yml +0 -0
  40. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/.github/ISSUE_TEMPLATE/feature-request.yml +0 -0
  41. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/.github/ISSUE_TEMPLATE/marker-request.yml +0 -0
  42. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/.github/dependabot.yml +0 -0
  43. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/.github/pull_request_template.md +0 -0
  44. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/.github/workflows/ci-docs.yml +0 -0
  45. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/.github/workflows/ci.yml +0 -0
  46. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/.github/workflows/docs-preview.yml +0 -0
  47. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/.github/workflows/docs.yml +0 -0
  48. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/.github/workflows/lint.yml +0 -0
  49. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/.github/workflows/pypi.yml +0 -0
  50. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/.gitignore +0 -0
  51. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/.gitmodules +0 -0
  52. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/.pre-commit-config.yaml +0 -0
  53. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/AUTHORS.rst +0 -0
  54. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/LICENSE.md +0 -0
  55. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/README.md +0 -0
  56. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/codecov.yml +0 -0
  57. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/conda-env.yml +0 -0
  58. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/Makefile +0 -0
  59. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/_static/css/custom.css +0 -0
  60. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/_static/js/custom.js +0 -0
  61. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/_templates/versions.html +0 -0
  62. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/api/api.rst +0 -0
  63. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/api/configs.rst +0 -0
  64. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/api/data.rst +0 -0
  65. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/api/datagrabbers.rst +0 -0
  66. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/api/datareaders.rst +0 -0
  67. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/api/index.rst +0 -0
  68. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/api/markers.rst +0 -0
  69. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/api/pipeline.rst +0 -0
  70. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/api/preprocessing.rst +0 -0
  71. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/api/stats.rst +0 -0
  72. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/api/storage.rst +0 -0
  73. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/api/testing.rst +0 -0
  74. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/api/utils.rst +0 -0
  75. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/builtin.rst +0 -0
  76. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/changes/contributors.inc +0 -0
  77. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/changes/newsfragments/.gitignore +0 -0
  78. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/changes/newsfragments/161.feature +0 -0
  79. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/changes/newsfragments/273.feature +0 -0
  80. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/changes/newsfragments/323.feature +0 -0
  81. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/changes/newsfragments/324.bugfix +0 -0
  82. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/conf.py +0 -0
  83. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/contribution.rst +0 -0
  84. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/extending/coordinates.rst +0 -0
  85. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/extending/datagrabber.rst +0 -0
  86. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/extending/dependencies.rst +0 -0
  87. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/extending/extension.rst +0 -0
  88. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/extending/index.rst +0 -0
  89. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/extending/marker.rst +0 -0
  90. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/extending/masks.rst +0 -0
  91. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/extending/parcellations.rst +0 -0
  92. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/extending/preprocessor.rst +0 -0
  93. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/faq.rst +0 -0
  94. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/help.rst +0 -0
  95. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/images/junifer_logo.png +0 -0
  96. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/index.rst +0 -0
  97. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/installation.rst +0 -0
  98. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/links.inc +0 -0
  99. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/maintaining.rst +0 -0
  100. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/redirect.html +0 -0
  101. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/sphinxext/gh_substitutions.py +0 -0
  102. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/starting.rst +0 -0
  103. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/understanding/data.rst +0 -0
  104. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/understanding/datagrabber.rst +0 -0
  105. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/understanding/datareader.rst +0 -0
  106. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/understanding/index.rst +0 -0
  107. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/understanding/marker.rst +0 -0
  108. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/understanding/pipeline.rst +0 -0
  109. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/understanding/preprocess.rst +0 -0
  110. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/understanding/storage.rst +0 -0
  111. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/using/codeless.rst +0 -0
  112. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/using/index.rst +0 -0
  113. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/using/masks.rst +0 -0
  114. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/using/queueing.rst +0 -0
  115. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/using/running.rst +0 -0
  116. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/whats_new.rst +0 -0
  117. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/examples/README.rst +0 -0
  118. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/examples/norun_hcpfc_pearson.py +0 -0
  119. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/examples/norun_ukbvm_gmd.py +0 -0
  120. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/examples/run_compute_parcel_mean.py +0 -0
  121. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/examples/run_datagrabber_bids_datalad.py +0 -0
  122. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/examples/run_ets_rss_marker.py +0 -0
  123. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/examples/run_junifer_julearn.py +0 -0
  124. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/examples/run_run_gmd_mean.py +0 -0
  125. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/examples/yamls/gmd_mean.yaml +0 -0
  126. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/examples/yamls/gmd_mean_htcondor.yaml +0 -0
  127. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/examples/yamls/partly_cloudy_agg_mean_tian.yml +0 -0
  128. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/examples/yamls/ukb_gmd_mean.yaml +0 -0
  129. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/ignore_words.txt +0 -0
  130. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/__init__.py +0 -0
  131. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/cli.py +0 -0
  132. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/decorators.py +0 -0
  133. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/functions.py +0 -0
  134. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/parser.py +0 -0
  135. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/queue_context/gnu_parallel_local_adapter.py +0 -0
  136. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/queue_context/htcondor_adapter.py +0 -0
  137. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/queue_context/queue_context_adapter.py +0 -0
  138. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/queue_context/tests/test_gnu_parallel_local_adapter.py +0 -0
  139. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/queue_context/tests/test_htcondor_adapter.py +0 -0
  140. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/res/afni/3dAFNItoNIFTI +0 -0
  141. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/res/afni/3dRSFC +0 -0
  142. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/res/afni/3dReHo +0 -0
  143. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/res/afni/afni +0 -0
  144. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/res/afni/run_afni_docker.sh +0 -0
  145. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/res/ants/ResampleImage +0 -0
  146. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/res/ants/antsApplyTransforms +0 -0
  147. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/res/ants/antsApplyTransformsToPoints +0 -0
  148. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/res/ants/run_ants_docker.sh +0 -0
  149. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/res/fsl/applywarp +0 -0
  150. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/res/fsl/flirt +0 -0
  151. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/res/fsl/img2imgcoord +0 -0
  152. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/res/fsl/run_fsl_docker.sh +0 -0
  153. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/res/fsl/std2imgcoord +0 -0
  154. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/res/run_conda.bash +0 -0
  155. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/res/run_conda.zsh +0 -0
  156. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/res/run_venv.bash +0 -0
  157. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/res/run_venv.zsh +0 -0
  158. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/tests/data/gmd_mean.yaml +0 -0
  159. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/tests/data/gmd_mean_htcondor.yaml +0 -0
  160. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/tests/data/partly_cloudy_agg_mean_tian.yml +0 -0
  161. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/tests/test_api_utils.py +0 -0
  162. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/tests/test_cli.py +0 -0
  163. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/tests/test_functions.py +0 -0
  164. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/tests/test_parser.py +0 -0
  165. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/utils.py +0 -0
  166. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/configs/juseless/datagrabbers/aomic_id1000_vbm.py +0 -0
  167. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/configs/juseless/datagrabbers/camcan_vbm.py +0 -0
  168. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/configs/juseless/datagrabbers/ixi_vbm.py +0 -0
  169. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/configs/juseless/datagrabbers/tests/test_aomic_id1000_vbm.py +0 -0
  170. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/configs/juseless/datagrabbers/tests/test_camcan_vbm.py +0 -0
  171. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/configs/juseless/datagrabbers/tests/test_ixi_vbm.py +0 -0
  172. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/configs/juseless/datagrabbers/tests/test_ucla.py +0 -0
  173. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/configs/juseless/datagrabbers/tests/test_ukb_vbm.py +0 -0
  174. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/configs/juseless/datagrabbers/ucla.py +0 -0
  175. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/configs/juseless/datagrabbers/ukb_vbm.py +0 -0
  176. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/data/VOIs/meta/AutobiographicalMemory_VOIs.txt +0 -0
  177. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/data/VOIs/meta/CogAC_VOIs.txt +0 -0
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  338. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/storage/sqlite.py +0 -0
  339. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/storage/tests/test_hdf5.py +0 -0
  340. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/storage/tests/test_pandas_base.py +0 -0
  341. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/storage/tests/test_sqlite.py +0 -0
  342. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/storage/tests/test_storage_base.py +0 -0
  343. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/storage/tests/test_utils.py +0 -0
  344. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/storage/utils.py +0 -0
  345. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/testing/data/sub-0001_task-anticipation_acq-seq_desc-confounds_regressors.tsv +0 -0
  346. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/testing/registry.py +0 -0
  347. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/testing/tests/test_oasisvmbtesting_datagrabber.py +0 -0
  348. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/testing/tests/test_partlycloudytesting_datagrabber.py +0 -0
  349. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/testing/tests/test_spmauditory_datagrabber.py +0 -0
  350. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/testing/tests/test_testing_registry.py +0 -0
  351. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/testing/utils.py +0 -0
  352. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/tests/test_main.py +0 -0
  353. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/tests/test_stats.py +0 -0
  354. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/utils/fs.py +0 -0
  355. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/utils/helpers.py +0 -0
  356. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/utils/logging.py +0 -0
  357. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/utils/tests/test_fs.py +0 -0
  358. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/utils/tests/test_helpers.py +0 -0
  359. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/utils/tests/test_logging.py +0 -0
  360. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer.egg-info/dependency_links.txt +0 -0
  361. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer.egg-info/entry_points.txt +0 -0
  362. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer.egg-info/requires.txt +0 -0
  363. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer.egg-info/top_level.txt +0 -0
  364. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/pyproject.toml +0 -0
  365. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/setup.cfg +0 -0
  366. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/setup.py +0 -0
  367. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/tools/create_aomic1000_example_dataset.py +0 -0
  368. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/tools/create_aomicpiop1_example_dataset.py +0 -0
  369. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/tools/create_aomicpiop2_example_dataset.py +0 -0
  370. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/tools/create_bids_example_dataset.py +0 -0
  371. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/tools/create_bids_example_dataset_sessions.py +0 -0
  372. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/tools/create_dmcc13_benchmark_example_dataset.py +0 -0
  373. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/tools/create_hcp1200_example_dataset.py +0 -0
  374. {junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/tox.ini +0 -0
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: junifer
3
- Version: 0.0.5.dev33
3
+ Version: 0.0.5.dev39
4
4
  Summary: JUelich NeuroImaging FEature extractoR
5
5
  Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
6
6
  Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/api/nilearn.rst RENAMED
@@ -1,8 +1,6 @@
1
1
  Nilearn
2
2
  =======
3
3
 
4
- This package provides re-implementations of some of the functions in `nilearn`_.
5
-
6
4
  .. automodule:: junifer.external.nilearn
7
5
  :members:
8
6
  :imported-members:
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/docs/api/onthefly.rst RENAMED
@@ -1,8 +1,6 @@
1
1
  On-the-fly
2
2
  ==========
3
3
 
4
- This package provides functions for quick transform operations on stored data.
5
-
6
4
  .. automodule:: junifer.onthefly
7
5
  :members:
8
6
  :imported-members:
junifer-0.0.5.dev39/docs/changes/newsfragments/115.doc ADDED
@@ -0,0 +1 @@
1
+ Improve sub-package level docstrings to better reflect their purposes by `Synchon Mandal`_
junifer-0.0.5.dev39/docs/changes/newsfragments/330.doc ADDED
@@ -0,0 +1 @@
1
+ Add missing DataGrabber ``types`` options in respective docstrings of :class:`.DataladAOMICID1000`, :class:`.DataladAOMICPIOP1`, :class:`.DataladAOMICPIOP2` and :class:`.DMCC13Benchmark` by `Synchon Mandal`_
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/_version.py RENAMED
@@ -12,5 +12,5 @@ __version__: str
12
12
  __version_tuple__: VERSION_TUPLE
13
13
  version_tuple: VERSION_TUPLE
14
14
 
15
- __version__ = version = '0.0.5.dev33'
16
- __version_tuple__ = version_tuple = (0, 0, 5, 'dev33')
15
+ __version__ = version = '0.0.5.dev39'
16
+ __version_tuple__ = version_tuple = (0, 0, 5, 'dev39')
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/__init__.py RENAMED
@@ -1,4 +1,4 @@
1
- """Provide imports for api sub-package."""
1
+ """Public API and CLI components."""
2
2
 
3
3
  # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
4
4
  # Synchon Mandal <s.mandal@fz-juelich.de>
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/api/queue_context/__init__.py RENAMED
@@ -1,4 +1,4 @@
1
- """Provide imports for queue context sub-package."""
1
+ """Context adapters for queueing."""
2
2
 
3
3
  # Authors: Synchon Mandal <s.mandal@fz-juelich.de>
4
4
  # License: AGPL
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/configs/__init__.py RENAMED
@@ -1,4 +1,4 @@
1
- """Provide imports for configs sub-package."""
1
+ """Custom components for specific platforms."""
2
2
 
3
3
  # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
4
4
  # License: AGPL
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/configs/juseless/__init__.py RENAMED
@@ -1,4 +1,4 @@
1
- """Provide imports for juseless sub-package."""
1
+ """Custom components for FZJ INM-7's beloved juseless."""
2
2
 
3
3
  # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
4
4
  # License: AGPL
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/configs/juseless/datagrabbers/__init__.py RENAMED
@@ -1,4 +1,4 @@
1
- """Provide imports for datagrabbers sub-package."""
1
+ """Custom DataGrabbers for FZJ INM-7's beloved juseless."""
2
2
 
3
3
  # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
4
4
  # Leonard Sasse <l.sasse@fz-juelich.de>
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/data/__init__.py RENAMED
@@ -1,4 +1,4 @@
1
- """Provide imports for data sub-package."""
1
+ """Parcellations, coordinates and masks."""
2
2
 
3
3
  # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
4
4
  # Synchon Mandal <s.mandal@fz-juelich.de>
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/data/coordinates.py RENAMED
@@ -1,4 +1,4 @@
1
- """Provide functions for list of coordinates."""
1
+ """Functions for coordinates manipulation."""
2
2
 
3
3
  # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
4
4
  # Synchon Mandal <s.mandal@fz-juelich.de>
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/data/masks.py RENAMED
@@ -1,4 +1,4 @@
1
- """Provide functions for masks."""
1
+ """Functions for mask manipulation."""
2
2
 
3
3
  # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
4
4
  # Synchon Mandal <s.mandal@fz-juelich.de>
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/data/parcellations.py RENAMED
@@ -1,4 +1,4 @@
1
- """Provide functions for parcellation."""
1
+ """Functions for parcellation manipulation."""
2
2
 
3
3
  # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
4
4
  # Vera Komeyer <v.komeyer@fz-juelich.de>
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/data/template_spaces.py RENAMED
@@ -1,4 +1,4 @@
1
- """Provide functions for template spaces."""
1
+ """Functions for template space manipulation."""
2
2
 
3
3
  # Authors: Synchon Mandal <s.mandal@fz-juelich.de>
4
4
  # License: AGPL
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/datagrabber/__init__.py RENAMED
@@ -1,4 +1,4 @@
1
- """Provide imports for datagrabber sub-package."""
1
+ """DataGrabbers for datasets' data description."""
2
2
 
3
3
  # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
4
4
  # Leonard Sasse <l.sasse@fz-juelich.de>
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/datagrabber/aomic/id1000.py RENAMED
@@ -24,8 +24,9 @@ class DataladAOMICID1000(PatternDataladDataGrabber):
24
24
  The directory where the datalad dataset will be cloned. If None,
25
25
  the datalad dataset will be cloned into a temporary directory
26
26
  (default None).
27
- types: {"BOLD", "BOLD_confounds", "T1w", "VBM_CSF", "VBM_GM", \
28
- "VBM_WM", "DWI"} or a list of the options, optional
27
+ types: {"BOLD", "BOLD_confounds", "BOLD_mask", "T1w", "T1w_mask", \
28
+ "VBM_CSF", "VBM_GM", "VBM_WM", "DWI"} or \
29
+ a list of the options, optional
29
30
  AOMIC data types. If None, all available data types are selected.
30
31
  (default None).
31
32
  native_t1w : bool, optional
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/datagrabber/aomic/piop1.py RENAMED
@@ -26,8 +26,9 @@ class DataladAOMICPIOP1(PatternDataladDataGrabber):
26
26
  The directory where the datalad dataset will be cloned. If None,
27
27
  the datalad dataset will be cloned into a temporary directory
28
28
  (default None).
29
- types: {"BOLD", "BOLD_confounds", "T1w", "VBM_CSF", "VBM_GM", \
30
- "VBM_WM", "DWI"} or a list of the options, optional
29
+ types: {"BOLD", "BOLD_confounds", "BOLD_mask", "T1w", "T1w_mask", \
30
+ "VBM_CSF", "VBM_GM", "VBM_WM", "DWI"} or \
31
+ a list of the options, optional
31
32
  AOMIC data types. If None, all available data types are selected.
32
33
  (default None).
33
34
  tasks : {"restingstate", "anticipation", "emomatching", "faces", \
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/datagrabber/aomic/piop2.py RENAMED
@@ -26,8 +26,9 @@ class DataladAOMICPIOP2(PatternDataladDataGrabber):
26
26
  The directory where the datalad dataset will be cloned. If None,
27
27
  the datalad dataset will be cloned into a temporary directory
28
28
  (default None).
29
- types: {"BOLD", "BOLD_confounds", "T1w", "VBM_CSF", "VBM_GM", \
30
- "VBM_WM", "DWI"} or a list of the options, optional
29
+ types: {"BOLD", "BOLD_confounds", "BOLD_mask", "T1w", "T1w_mask", \
30
+ "VBM_CSF", "VBM_GM", "VBM_WM", "DWI"} or \
31
+ a list of the options, optional
31
32
  AOMIC data types. If None, all available data types are selected.
32
33
  (default None).
33
34
  tasks : {"restingstate", "stopsignal", "workingmemory"} \
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/datagrabber/dmcc13_benchmark.py RENAMED
@@ -25,8 +25,9 @@ class DMCC13Benchmark(PatternDataladDataGrabber):
25
25
  The directory where the datalad dataset will be cloned. If None,
26
26
  the datalad dataset will be cloned into a temporary directory
27
27
  (default None).
28
- types: {"BOLD", "BOLD_confounds", "T1w", "VBM_CSF", "VBM_GM", \
29
- "VBM_WM"} or a list of the options, optional
28
+ types: {"BOLD", "BOLD_confounds", "BOLD_mask", "T1w", "T1w_mask", \
29
+ "VBM_CSF", "VBM_GM", "VBM_WM", "Warp" (only if \
30
+ "native_t1w = True")} or a list of the options, optional
30
31
  DMCC data types. If None, all available data types are selected.
31
32
  (default None).
32
33
  sessions: {"ses-wave1bas", "ses-wave1pro", "ses-wave1rea"} or list of \
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/datareader/__init__.py RENAMED
@@ -1,4 +1,4 @@
1
- """Provide imports for datareader sub-package."""
1
+ """DataReaders for datasets' data loading."""
2
2
 
3
3
  # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
4
4
  # Leonard Sasse <l.sasse@fz-juelich.de>
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/external/__init__.py RENAMED
@@ -1,4 +1,4 @@
1
- """Provide imports for external sub-package."""
1
+ """External tools adapted for junifer."""
2
2
 
3
3
  # Authors: Synchon Mandal <s.mandal@fz-juelich.de>
4
4
  # License: AGPL
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/external/nilearn/__init__.py RENAMED
@@ -1,4 +1,4 @@
1
- """Provide imports for custom nilearn objects sub-package."""
1
+ """Custom objects adapted from nilearn."""
2
2
 
3
3
  # Authors: Synchon Mandal <s.mandal@fz-juelich.de>
4
4
  # License: AGPL
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/markers/__init__.py RENAMED
@@ -1,4 +1,4 @@
1
- """Provide imports for markers sub-package."""
1
+ """Markers for feature extraction."""
2
2
 
3
3
  # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
4
4
  # Leonard Sasse <l.sasse@fz-juelich.de>
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/onthefly/__init__.py RENAMED
@@ -1,4 +1,4 @@
1
- """Provide imports for onthefly sub-package."""
1
+ """Utilities for on-the-fly analyses."""
2
2
 
3
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  # Authors: Synchon Mandal <s.mandal@fz-juelich.de>
4
4
  # License: AGPL
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/pipeline/__init__.py RENAMED
@@ -1,4 +1,4 @@
1
- """Provide imports for pipeline sub-package."""
1
+ """Pipeline components."""
2
2
 
3
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  # Authors: Synchon Mandal <s.mandal@fz-juelich.de>
4
4
  # License: AGPL
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/preprocess/__init__.py RENAMED
@@ -1,4 +1,4 @@
1
- """Provide imports for preprocess sub-package."""
1
+ """Preprocessors for preprocessing data before feature extraction."""
2
2
 
3
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  # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
4
4
  # Leonard Sasse <l.sasse@fz-juelich.de>
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/stats.py RENAMED
@@ -1,4 +1,4 @@
1
- """Provide functions for statistics."""
1
+ """Statistical functions and helpers."""
2
2
 
3
3
  # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
4
4
  # Synchon Mandal <s.mandal@fz-juelich.de>
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/storage/__init__.py RENAMED
@@ -1,4 +1,4 @@
1
- """Provide imports for storage sub-package."""
1
+ """Storages for storing extracted features."""
2
2
 
3
3
  # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
4
4
  # Synchon Mandal <s.mandal@fz-juelich.de>
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/testing/__init__.py RENAMED
@@ -1,4 +1,4 @@
1
- """Provide imports for testing sub-package."""
1
+ """Testing components."""
2
2
 
3
3
  # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
4
4
  # Synchon Mandal <s.mandal@fz-juelich.de>
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/testing/datagrabbers.py RENAMED
@@ -1,4 +1,4 @@
1
- """Provide testing DataGrabbers."""
1
+ """Testing DataGrabbers."""
2
2
 
3
3
  # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
4
4
  # Synchon Mandal <s.mandal@fz-juelich.de>
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer/utils/__init__.py RENAMED
@@ -1,4 +1,4 @@
1
- """Provide imports for utils sub-package."""
1
+ """General utilities and helpers."""
2
2
 
3
3
  # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
4
4
  # Synchon Mandal <s.mandal@fz-juelich.de>
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: junifer
3
- Version: 0.0.5.dev33
3
+ Version: 0.0.5.dev39
4
4
  Summary: JUelich NeuroImaging FEature extractoR
5
5
  Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
6
6
  Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/junifer.egg-info/SOURCES.txt RENAMED
@@ -57,10 +57,12 @@ docs/api/testing.rst
57
57
  docs/api/utils.rst
58
58
  docs/changes/contributors.inc
59
59
  docs/changes/newsfragments/.gitignore
60
+ docs/changes/newsfragments/115.doc
60
61
  docs/changes/newsfragments/161.feature
61
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  docs/changes/newsfragments/273.feature
62
63
  docs/changes/newsfragments/323.feature
63
64
  docs/changes/newsfragments/324.bugfix
65
+ docs/changes/newsfragments/330.doc
64
66
  docs/extending/coordinates.rst
65
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  docs/extending/datagrabber.rst
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  docs/extending/dependencies.rst
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/.gitignore RENAMED
File without changes
{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/.gitmodules RENAMED
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{junifer-0.0.5.dev33 → junifer-0.0.5.dev39}/AUTHORS.rst RENAMED
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