junifer 0.0.5.dev202__tar.gz → 0.0.5.dev208__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (402) hide show
  1. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/PKG-INFO +1 -1
  2. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/examples/run_compute_parcel_mean.py +2 -2
  3. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/examples/run_ets_rss_marker.py +2 -2
  4. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/examples/run_junifer_julearn.py +1 -1
  5. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/_version.py +2 -2
  6. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/markers/functional_connectivity/crossparcellation_functional_connectivity.py +6 -2
  7. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer.egg-info/PKG-INFO +1 -1
  8. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/.github/ISSUE_TEMPLATE/bug-report.yml +0 -0
  9. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/.github/ISSUE_TEMPLATE/config.yml +0 -0
  10. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/.github/ISSUE_TEMPLATE/dataset-request.yml +0 -0
  11. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/.github/ISSUE_TEMPLATE/documention-request.yml +0 -0
  12. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/.github/ISSUE_TEMPLATE/feature-request.yml +0 -0
  13. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/.github/ISSUE_TEMPLATE/marker-request.yml +0 -0
  14. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/.github/dependabot.yml +0 -0
  15. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/.github/pull_request_template.md +0 -0
  16. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/.github/workflows/ci-docs.yml +0 -0
  17. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/.github/workflows/ci.yml +0 -0
  18. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/.github/workflows/docs-preview.yml +0 -0
  19. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/.github/workflows/docs.yml +0 -0
  20. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/.github/workflows/lint.yml +0 -0
  21. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/.github/workflows/pypi.yml +0 -0
  22. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/.gitignore +0 -0
  23. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/.gitmodules +0 -0
  24. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/.pre-commit-config.yaml +0 -0
  25. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/AUTHORS.rst +0 -0
  26. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/LICENSE.md +0 -0
  27. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/README.md +0 -0
  28. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/codecov.yml +0 -0
  29. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/conda-env.yml +0 -0
  30. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/Makefile +0 -0
  31. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/_static/css/custom.css +0 -0
  32. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/_static/js/custom.js +0 -0
  33. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/_templates/versions.html +0 -0
  34. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/api/api.rst +0 -0
  35. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/api/configs.rst +0 -0
  36. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/api/data.rst +0 -0
  37. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/api/datagrabbers.rst +0 -0
  38. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/api/datareaders.rst +0 -0
  39. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/api/index.rst +0 -0
  40. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/api/markers.rst +0 -0
  41. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/api/nilearn.rst +0 -0
  42. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/api/onthefly.rst +0 -0
  43. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/api/pipeline.rst +0 -0
  44. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/api/preprocessing.rst +0 -0
  45. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/api/stats.rst +0 -0
  46. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/api/storage.rst +0 -0
  47. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/api/testing.rst +0 -0
  48. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/api/utils.rst +0 -0
  49. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/builtin.rst +0 -0
  50. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/changes/contributors.inc +0 -0
  51. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/changes/newsfragments/.gitignore +0 -0
  52. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/changes/newsfragments/115.doc +0 -0
  53. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/changes/newsfragments/136.enh +0 -0
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  58. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/changes/newsfragments/324.bugfix +0 -0
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  61. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/changes/newsfragments/331.bugfix +0 -0
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  63. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/changes/newsfragments/336.removal +0 -0
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  67. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/changes/newsfragments/341.enh +0 -0
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  69. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/changes/newsfragments/343.feature +0 -0
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  75. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/changes/newsfragments/349.change +0 -0
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  78. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/conf.py +0 -0
  79. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/contribution.rst +0 -0
  80. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/extending/coordinates.rst +0 -0
  81. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/extending/datagrabber.rst +0 -0
  82. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/extending/dependencies.rst +0 -0
  83. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/extending/extension.rst +0 -0
  84. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/extending/index.rst +0 -0
  85. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/extending/marker.rst +0 -0
  86. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/extending/masks.rst +0 -0
  87. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/extending/parcellations.rst +0 -0
  88. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/extending/preprocessor.rst +0 -0
  89. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/faq.rst +0 -0
  90. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/help.rst +0 -0
  91. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/images/junifer_logo.png +0 -0
  92. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/index.rst +0 -0
  93. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/installation.rst +0 -0
  94. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/links.inc +0 -0
  95. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/maintaining.rst +0 -0
  96. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/redirect.html +0 -0
  97. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/sphinxext/gh_substitutions.py +0 -0
  98. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/starting.rst +0 -0
  99. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/understanding/data.rst +0 -0
  100. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/understanding/datagrabber.rst +0 -0
  101. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/understanding/datareader.rst +0 -0
  102. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/understanding/index.rst +0 -0
  103. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/understanding/marker.rst +0 -0
  104. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/understanding/pipeline.rst +0 -0
  105. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/understanding/preprocess.rst +0 -0
  106. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/understanding/storage.rst +0 -0
  107. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/using/codeless.rst +0 -0
  108. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/using/index.rst +0 -0
  109. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/using/masks.rst +0 -0
  110. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/using/queueing.rst +0 -0
  111. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/using/running.rst +0 -0
  112. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/docs/whats_new.rst +0 -0
  113. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/examples/README.rst +0 -0
  114. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/examples/norun_hcpfc_pearson.py +0 -0
  115. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/examples/norun_ukbvm_gmd.py +0 -0
  116. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/examples/run_datagrabber_bids_datalad.py +0 -0
  117. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/examples/run_run_gmd_mean.py +0 -0
  118. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/examples/yamls/gmd_mean.yaml +0 -0
  119. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/examples/yamls/gmd_mean_htcondor.yaml +0 -0
  120. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/examples/yamls/partly_cloudy_agg_mean_tian.yml +0 -0
  121. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/examples/yamls/ukb_gmd_mean.yaml +0 -0
  122. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/ignore_words.txt +0 -0
  123. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/__init__.py +0 -0
  124. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/api/__init__.py +0 -0
  125. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/api/cli.py +0 -0
  126. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/api/decorators.py +0 -0
  127. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/api/functions.py +0 -0
  128. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/api/parser.py +0 -0
  129. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/api/queue_context/__init__.py +0 -0
  130. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/api/queue_context/gnu_parallel_local_adapter.py +0 -0
  131. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/api/queue_context/htcondor_adapter.py +0 -0
  132. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/api/queue_context/queue_context_adapter.py +0 -0
  133. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/api/queue_context/tests/test_gnu_parallel_local_adapter.py +0 -0
  134. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/api/queue_context/tests/test_htcondor_adapter.py +0 -0
  135. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/api/res/afni/3dAFNItoNIFTI +0 -0
  136. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/api/res/afni/3dRSFC +0 -0
  137. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/api/res/afni/3dReHo +0 -0
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  139. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/api/res/afni/run_afni_docker.sh +0 -0
  140. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/api/res/ants/ResampleImage +0 -0
  141. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/api/res/ants/antsApplyTransforms +0 -0
  142. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/api/res/ants/antsApplyTransformsToPoints +0 -0
  143. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/api/res/ants/run_ants_docker.sh +0 -0
  144. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/api/res/freesurfer/mri_binarize +0 -0
  145. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/api/res/freesurfer/mri_mc +0 -0
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  147. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/api/res/freesurfer/mris_convert +0 -0
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  162. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/api/tests/test_cli.py +0 -0
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  165. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/api/utils.py +0 -0
  166. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/configs/__init__.py +0 -0
  167. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/configs/juseless/__init__.py +0 -0
  168. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/configs/juseless/datagrabbers/__init__.py +0 -0
  169. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/configs/juseless/datagrabbers/aomic_id1000_vbm.py +0 -0
  170. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/configs/juseless/datagrabbers/camcan_vbm.py +0 -0
  171. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/configs/juseless/datagrabbers/ixi_vbm.py +0 -0
  172. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/configs/juseless/datagrabbers/tests/test_aomic_id1000_vbm.py +0 -0
  173. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/configs/juseless/datagrabbers/tests/test_camcan_vbm.py +0 -0
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  175. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/configs/juseless/datagrabbers/tests/test_ucla.py +0 -0
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  336. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/pipeline/tests/test_workdir_manager.py +0 -0
  337. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/pipeline/update_meta_mixin.py +0 -0
  338. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/pipeline/utils.py +0 -0
  339. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/pipeline/workdir_manager.py +0 -0
  340. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/preprocess/__init__.py +0 -0
  341. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/preprocess/base.py +0 -0
  342. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/preprocess/confounds/__init__.py +0 -0
  343. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/preprocess/confounds/fmriprep_confound_remover.py +0 -0
  344. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/preprocess/confounds/tests/test_fmriprep_confound_remover.py +0 -0
  345. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/preprocess/smoothing/__init__.py +0 -0
  346. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/preprocess/smoothing/_afni_smoothing.py +0 -0
  347. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/preprocess/smoothing/_fsl_smoothing.py +0 -0
  348. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/preprocess/smoothing/_nilearn_smoothing.py +0 -0
  349. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/preprocess/smoothing/smoothing.py +0 -0
  350. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/preprocess/smoothing/tests/test_smoothing.py +0 -0
  351. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/preprocess/tests/test_preprocess_base.py +0 -0
  352. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/preprocess/warping/__init__.py +0 -0
  353. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/preprocess/warping/_ants_warper.py +0 -0
  354. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/preprocess/warping/_fsl_warper.py +0 -0
  355. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/preprocess/warping/space_warper.py +0 -0
  356. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/preprocess/warping/tests/test_space_warper.py +0 -0
  357. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/stats.py +0 -0
  358. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/storage/__init__.py +0 -0
  359. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/storage/base.py +0 -0
  360. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/storage/hdf5.py +0 -0
  361. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/storage/pandas_base.py +0 -0
  362. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/storage/sqlite.py +0 -0
  363. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/storage/tests/test_hdf5.py +0 -0
  364. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/storage/tests/test_pandas_base.py +0 -0
  365. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/storage/tests/test_sqlite.py +0 -0
  366. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/storage/tests/test_storage_base.py +0 -0
  367. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/storage/tests/test_utils.py +0 -0
  368. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/storage/utils.py +0 -0
  369. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/testing/__init__.py +0 -0
  370. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/testing/data/sub-0001_task-anticipation_acq-seq_desc-confounds_regressors.tsv +0 -0
  371. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/testing/datagrabbers.py +0 -0
  372. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/testing/registry.py +0 -0
  373. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/testing/tests/test_oasisvmbtesting_datagrabber.py +0 -0
  374. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/testing/tests/test_partlycloudytesting_datagrabber.py +0 -0
  375. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/testing/tests/test_spmauditory_datagrabber.py +0 -0
  376. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/testing/tests/test_testing_registry.py +0 -0
  377. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/testing/utils.py +0 -0
  378. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/tests/test_main.py +0 -0
  379. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/tests/test_stats.py +0 -0
  380. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/utils/__init__.py +0 -0
  381. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/utils/fs.py +0 -0
  382. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/utils/helpers.py +0 -0
  383. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/utils/logging.py +0 -0
  384. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/utils/tests/test_fs.py +0 -0
  385. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/utils/tests/test_helpers.py +0 -0
  386. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/utils/tests/test_logging.py +0 -0
  387. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer.egg-info/SOURCES.txt +0 -0
  388. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer.egg-info/dependency_links.txt +0 -0
  389. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer.egg-info/entry_points.txt +0 -0
  390. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer.egg-info/requires.txt +0 -0
  391. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer.egg-info/top_level.txt +0 -0
  392. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/pyproject.toml +0 -0
  393. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/setup.cfg +0 -0
  394. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/setup.py +0 -0
  395. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/tools/create_aomic1000_example_dataset.py +0 -0
  396. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/tools/create_aomicpiop1_example_dataset.py +0 -0
  397. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/tools/create_aomicpiop2_example_dataset.py +0 -0
  398. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/tools/create_bids_example_dataset.py +0 -0
  399. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/tools/create_bids_example_dataset_sessions.py +0 -0
  400. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/tools/create_dmcc13_benchmark_example_dataset.py +0 -0
  401. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/tools/create_hcp1200_example_dataset.py +0 -0
  402. {junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/tox.ini +0 -0
{junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: junifer
3
- Version: 0.0.5.dev202
3
+ Version: 0.0.5.dev208
4
4
  Summary: JUelich NeuroImaging FEature extractoR
5
5
  Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
6
6
  Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
{junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/examples/run_compute_parcel_mean.py RENAMED
@@ -37,7 +37,7 @@ with OasisVBMTestingDataGrabber() as dg:
37
37
  feature = marker.fit_transform(element_data)
38
38
  # Print the output
39
39
  print(feature.keys())
40
- print(feature["VBM_GM"]["data"].shape) # Shape is (1 x parcels)
40
+ print(feature["VBM_GM"]["aggregation"]["data"].shape) # Shape is (1 x parcels)
41
41
 
42
42
  ###############################################################################
43
43
  # Perform parcel aggregation on BOLD data (4D) from SPM Auditory dataset
@@ -54,4 +54,4 @@ with SPMAuditoryTestingDataGrabber() as dg:
54
54
  feature = marker.fit_transform(element_data)
55
55
  # Print the output
56
56
  print(feature.keys())
57
- print(feature["BOLD"]["data"].shape) # Shape is (timepoints x parcels)
57
+ print(feature["BOLD"]["aggregation"]["data"].shape) # Shape is (timepoints x parcels)
{junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/examples/run_ets_rss_marker.py RENAMED
@@ -70,8 +70,8 @@ with tempfile.TemporaryDirectory() as tmpdir:
70
70
  # List all the features
71
71
  print(db.list_features())
72
72
  # Read extracted features
73
- df_vbm = db.read_df(feature_name="BOLD_Schaefer100x17_RSSETS")
73
+ df_rssets = db.read_df(feature_name="BOLD_Schaefer200x17_RSSETS_rss_ets")
74
74
 
75
75
  ###############################################################################
76
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  # Now we take a look at the dataframe
77
- df_vbm.head()
77
+ df_rssets.head()
{junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/examples/run_junifer_julearn.py RENAMED
@@ -84,7 +84,7 @@ with tempfile.TemporaryDirectory() as tmpdir:
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84
  collect(storage)
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  db = SQLiteFeatureStorage(uri=storage["uri"])
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86
 
87
- df_vbm = db.read_df(feature_name="VBM_GM_Schaefer200x17_Mean")
87
+ df_vbm = db.read_df(feature_name="VBM_GM_Schaefer200x17_Mean_aggregation")
88
88
  oasis_subjects = [x[0] for x in df_vbm.index]
89
89
  df_vbm.index = oasis_subjects
90
90
 
{junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/_version.py RENAMED
@@ -12,5 +12,5 @@ __version__: str
12
12
  __version_tuple__: VERSION_TUPLE
13
13
  version_tuple: VERSION_TUPLE
14
14
 
15
- __version__ = version = '0.0.5.dev202'
16
- __version_tuple__ = version_tuple = (0, 0, 5, 'dev202')
15
+ __version__ = version = '0.0.5.dev208'
16
+ __version_tuple__ = version_tuple = (0, 0, 5, 'dev208')
{junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer/markers/functional_connectivity/crossparcellation_functional_connectivity.py RENAMED
@@ -136,8 +136,12 @@ class CrossParcellationFC(BaseMarker):
136
136
  method=self.correlation_method,
137
137
  ).values,
138
138
  # Columns should be named after parcellation 1
139
- "col_names": aggregation_parcellation_one["col_names"],
139
+ "col_names": aggregation_parcellation_one["aggregation"][
140
+ "col_names"
141
+ ],
140
142
  # Rows should be named after parcellation 2
141
- "row_names": aggregation_parcellation_two["col_names"],
143
+ "row_names": aggregation_parcellation_two["aggregation"][
144
+ "col_names"
145
+ ],
142
146
  },
143
147
  }
{junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/junifer.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: junifer
3
- Version: 0.0.5.dev202
3
+ Version: 0.0.5.dev208
4
4
  Summary: JUelich NeuroImaging FEature extractoR
5
5
  Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
6
6
  Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
{junifer-0.0.5.dev202 → junifer-0.0.5.dev208}/README.md RENAMED
File without changes