junifer 0.0.4.dev470__tar.gz → 0.0.4.dev477__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (376) hide show
  1. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/PKG-INFO +2 -1
  2. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/README.md +1 -0
  3. junifer-0.0.4.dev477/docs/changes/newsfragments/294.misc +1 -0
  4. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/_version.py +2 -2
  5. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer.egg-info/PKG-INFO +2 -1
  6. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer.egg-info/SOURCES.txt +1 -0
  7. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/pyproject.toml +6 -8
  8. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/.github/ISSUE_TEMPLATE/bug-report.yml +0 -0
  9. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/.github/ISSUE_TEMPLATE/config.yml +0 -0
  10. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/.github/ISSUE_TEMPLATE/dataset-request.yml +0 -0
  11. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/.github/ISSUE_TEMPLATE/documention-request.yml +0 -0
  12. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/.github/ISSUE_TEMPLATE/feature-request.yml +0 -0
  13. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/.github/ISSUE_TEMPLATE/marker-request.yml +0 -0
  14. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/.github/pull_request_template.md +0 -0
  15. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/.github/workflows/ci-docs.yml +0 -0
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  17. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/.github/workflows/docs-preview.yml +0 -0
  18. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/.github/workflows/docs.yml +0 -0
  19. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/.github/workflows/lint.yml +0 -0
  20. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/.github/workflows/pypi.yml +0 -0
  21. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/.gitignore +0 -0
  22. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/.gitmodules +0 -0
  23. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/.pre-commit-config.yaml +0 -0
  24. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/AUTHORS.rst +0 -0
  25. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/LICENSE.md +0 -0
  26. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/codecov.yml +0 -0
  27. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/conda-env.yml +0 -0
  28. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/Makefile +0 -0
  29. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/_static/css/custom.css +0 -0
  30. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/_static/js/custom.js +0 -0
  31. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/_templates/versions.html +0 -0
  32. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/api/api.rst +0 -0
  33. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/api/configs.rst +0 -0
  34. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/api/data.rst +0 -0
  35. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/api/datagrabbers.rst +0 -0
  36. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/api/datareaders.rst +0 -0
  37. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/api/index.rst +0 -0
  38. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/api/markers.rst +0 -0
  39. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/api/nilearn.rst +0 -0
  40. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/api/onthefly.rst +0 -0
  41. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/api/pipeline.rst +0 -0
  42. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/api/preprocessing.rst +0 -0
  43. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/api/stats.rst +0 -0
  44. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/api/storage.rst +0 -0
  45. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/api/testing.rst +0 -0
  46. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/api/utils.rst +0 -0
  47. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/builtin.rst +0 -0
  48. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/changes/contributors.inc +0 -0
  49. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/changes/newsfragments/.gitignore +0 -0
  50. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/changes/newsfragments/145.feature +0 -0
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  91. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/conf.py +0 -0
  92. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/contribution.rst +0 -0
  93. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/extending/coordinates.rst +0 -0
  94. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/extending/datagrabber.rst +0 -0
  95. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/extending/extension.rst +0 -0
  96. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/extending/index.rst +0 -0
  97. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/extending/marker.rst +0 -0
  98. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/extending/masks.rst +0 -0
  99. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/extending/parcellations.rst +0 -0
  100. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/faq.rst +0 -0
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  104. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/installation.rst +0 -0
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  108. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/sphinxext/gh_substitutions.py +0 -0
  109. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/starting.rst +0 -0
  110. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/understanding/data.rst +0 -0
  111. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/understanding/datagrabber.rst +0 -0
  112. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/understanding/datareader.rst +0 -0
  113. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/understanding/index.rst +0 -0
  114. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/understanding/marker.rst +0 -0
  115. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/understanding/pipeline.rst +0 -0
  116. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/understanding/preprocess.rst +0 -0
  117. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/understanding/storage.rst +0 -0
  118. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/using/codeless.rst +0 -0
  119. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/using/index.rst +0 -0
  120. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/using/masks.rst +0 -0
  121. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/using/queueing.rst +0 -0
  122. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/using/running.rst +0 -0
  123. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/docs/whats_new.rst +0 -0
  124. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/examples/README.rst +0 -0
  125. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/examples/norun_hcpfc_pearson.py +0 -0
  126. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/examples/norun_ukbvm_gmd.py +0 -0
  127. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/examples/run_compute_parcel_mean.py +0 -0
  128. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/examples/run_datagrabber_bids_datalad.py +0 -0
  129. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/examples/run_ets_rss_marker.py +0 -0
  130. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/examples/run_junifer_julearn.py +0 -0
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  132. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/examples/yamls/gmd_mean.yaml +0 -0
  133. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/examples/yamls/gmd_mean_htcondor.yaml +0 -0
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  135. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/ignore_words.txt +0 -0
  136. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/__init__.py +0 -0
  137. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/api/__init__.py +0 -0
  138. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/api/cli.py +0 -0
  139. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/api/decorators.py +0 -0
  140. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/api/functions.py +0 -0
  141. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/api/parser.py +0 -0
  142. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/api/res/afni/3dAFNItoNIFTI +0 -0
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  147. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/api/res/ants/antsApplyTransforms +0 -0
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  339. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/storage/pandas_base.py +0 -0
  340. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/storage/sqlite.py +0 -0
  341. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/storage/tests/test_hdf5.py +0 -0
  342. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/storage/tests/test_pandas_base.py +0 -0
  343. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/storage/tests/test_sqlite.py +0 -0
  344. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/storage/tests/test_storage_base.py +0 -0
  345. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/storage/tests/test_utils.py +0 -0
  346. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/storage/utils.py +0 -0
  347. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/testing/__init__.py +0 -0
  348. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/testing/data/sub-0001_task-anticipation_acq-seq_desc-confounds_regressors.tsv +0 -0
  349. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/testing/datagrabbers.py +0 -0
  350. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/testing/registry.py +0 -0
  351. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/testing/tests/test_oasisvmbtesting_datagrabber.py +0 -0
  352. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/testing/tests/test_partlycloudytesting_datagrabber.py +0 -0
  353. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/testing/tests/test_spmauditory_datagrabber.py +0 -0
  354. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/testing/tests/test_testing_registry.py +0 -0
  355. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/testing/utils.py +0 -0
  356. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/tests/test_main.py +0 -0
  357. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/tests/test_stats.py +0 -0
  358. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/utils/__init__.py +0 -0
  359. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/utils/fs.py +0 -0
  360. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/utils/logging.py +0 -0
  361. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/utils/tests/test_fs.py +0 -0
  362. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/utils/tests/test_logging.py +0 -0
  363. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer.egg-info/dependency_links.txt +0 -0
  364. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer.egg-info/entry_points.txt +0 -0
  365. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer.egg-info/requires.txt +0 -0
  366. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer.egg-info/top_level.txt +0 -0
  367. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/setup.cfg +0 -0
  368. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/setup.py +0 -0
  369. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/tools/create_aomic1000_example_dataset.py +0 -0
  370. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/tools/create_aomicpiop1_example_dataset.py +0 -0
  371. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/tools/create_aomicpiop2_example_dataset.py +0 -0
  372. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/tools/create_bids_example_dataset.py +0 -0
  373. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/tools/create_bids_example_dataset_sessions.py +0 -0
  374. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/tools/create_dmcc13_benchmark_example_dataset.py +0 -0
  375. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/tools/create_hcp1200_example_dataset.py +0 -0
  376. {junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/tox.ini +0 -0
{junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
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  Metadata-Version: 2.1
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  Name: junifer
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- Version: 0.0.4.dev470
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+ Version: 0.0.4.dev477
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  Summary: JUelich NeuroImaging FEature extractoR
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  Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
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  Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
@@ -73,6 +73,7 @@ Requires-Dist: sphinxcontrib-mermaid<0.10,>=0.8.1; extra == "docs"
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  [![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/charliermarsh/ruff/main/assets/badge/v2.json)](https://github.com/charliermarsh/ruff)
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  [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8176570.svg)](https://doi.org/10.5281/zenodo.8176570)
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+ [![FAIR checklist badge](https://fairsoftwarechecklist.net/badge.svg)](https://fairsoftwarechecklist.net/v0.2?f=31&a=32113&i=32322&r=133)
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  ## About
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{junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/README.md RENAMED
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  [![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/charliermarsh/ruff/main/assets/badge/v2.json)](https://github.com/charliermarsh/ruff)
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  [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8176570.svg)](https://doi.org/10.5281/zenodo.8176570)
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+ [![FAIR checklist badge](https://fairsoftwarechecklist.net/badge.svg)](https://fairsoftwarechecklist.net/v0.2?f=31&a=32113&i=32322&r=133)
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  ## About
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junifer-0.0.4.dev477/docs/changes/newsfragments/294.misc ADDED
@@ -0,0 +1 @@
1
+ Update ``pyproject.toml`` and add FAIR shield in ``README.md`` by `Synchon Mandal`_
{junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer/_version.py RENAMED
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- __version_tuple__ = version_tuple = (0, 0, 4, 'dev470')
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+ __version__ = version = '0.0.4.dev477'
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+ __version_tuple__ = version_tuple = (0, 0, 4, 'dev477')
{junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer.egg-info/PKG-INFO RENAMED
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  Metadata-Version: 2.1
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  Name: junifer
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- Version: 0.0.4.dev470
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+ Version: 0.0.4.dev477
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  Summary: JUelich NeuroImaging FEature extractoR
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  Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
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  Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
@@ -73,6 +73,7 @@ Requires-Dist: sphinxcontrib-mermaid<0.10,>=0.8.1; extra == "docs"
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  [![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/charliermarsh/ruff/main/assets/badge/v2.json)](https://github.com/charliermarsh/ruff)
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  [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8176570.svg)](https://doi.org/10.5281/zenodo.8176570)
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  ## About
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{junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/junifer.egg-info/SOURCES.txt RENAMED
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{junifer-0.0.4.dev470 → junifer-0.0.4.dev477}/pyproject.toml RENAMED
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  [build-system]
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- requires = [
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- "setuptools >= 61.0.0",
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- "wheel",
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+ requires = ["setuptools>=64", "setuptools_scm>=8"]
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@@ -45,9 +41,9 @@ dependencies = [
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  "pandas>=1.4.0,<2.2",
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  "nibabel>=3.2.0,<5.11",
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  "nilearn>=0.9.0,<=0.11.0",
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- "sqlalchemy>=1.4.27,<= 2.1.0",
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+ "sqlalchemy>=1.4.27,<=2.1.0",
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  "ruamel.yaml>=0.17,<0.18",
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- "importlib_metadata; python_version < '3.10'",
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  "h5py>=3.8.0,<3.10",
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  # Use of `functools.lru_cache` or `functools.cache` on methods can lead to
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@@ -187,6 +183,8 @@ known-third-party =[
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  "pytest",
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  ]
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