junifer 0.0.4.dev11__tar.gz → 0.0.4.dev15__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (301) hide show
  1. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/PKG-INFO +1 -1
  2. junifer-0.0.4.dev15/docs/changes/newsfragments/248.change +1 -0
  3. junifer-0.0.4.dev15/junifer/_version.py +4 -0
  4. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/onthefly/read_transform.py +13 -6
  5. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer.egg-info/PKG-INFO +1 -1
  6. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer.egg-info/SOURCES.txt +1 -0
  7. junifer-0.0.4.dev11/junifer/_version.py +0 -4
  8. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/.github/ISSUE_TEMPLATE/bug-report.yml +0 -0
  9. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/.github/ISSUE_TEMPLATE/config.yml +0 -0
  10. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/.github/ISSUE_TEMPLATE/dataset-request.yml +0 -0
  11. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/.github/ISSUE_TEMPLATE/documention-request.yml +0 -0
  12. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/.github/ISSUE_TEMPLATE/feature-request.yml +0 -0
  13. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/.github/ISSUE_TEMPLATE/marker-request.yml +0 -0
  14. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/.github/pull_request_template.md +0 -0
  15. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/.github/workflows/ci-docs.yml +0 -0
  16. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/.github/workflows/ci.yml +0 -0
  17. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/.github/workflows/docs-preview.yml +0 -0
  18. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/.github/workflows/docs.yml +0 -0
  19. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/.github/workflows/lint.yml +0 -0
  20. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/.github/workflows/pypi.yml +0 -0
  21. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/.gitignore +0 -0
  22. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/.gitmodules +0 -0
  23. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/.pre-commit-config.yaml +0 -0
  24. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/AUTHORS.rst +0 -0
  25. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/LICENSE.md +0 -0
  26. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/README.md +0 -0
  27. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/codecov.yml +0 -0
  28. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/conda-env.yml +0 -0
  29. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/Makefile +0 -0
  30. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/_static/css/custom.css +0 -0
  31. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/_static/js/custom.js +0 -0
  32. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/_templates/versions.html +0 -0
  33. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/api/api.rst +0 -0
  34. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/api/configs.rst +0 -0
  35. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/api/data.rst +0 -0
  36. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/api/datagrabbers.rst +0 -0
  37. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/api/datareaders.rst +0 -0
  38. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/api/index.rst +0 -0
  39. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/api/markers.rst +0 -0
  40. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/api/nilearn.rst +0 -0
  41. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/api/onthefly.rst +0 -0
  42. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/api/pipeline.rst +0 -0
  43. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/api/preprocessing.rst +0 -0
  44. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/api/stats.rst +0 -0
  45. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/api/storage.rst +0 -0
  46. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/api/testing.rst +0 -0
  47. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/api/utils.rst +0 -0
  48. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/builtin.rst +0 -0
  49. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/changes/contributors.inc +0 -0
  50. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/changes/newsfragments/.gitignore +0 -0
  51. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/changes/newsfragments/233.bugfix +0 -0
  52. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/changes/newsfragments/247.doc +0 -0
  53. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/conf.py +0 -0
  54. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/contribution.rst +0 -0
  55. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/extending/coordinates.rst +0 -0
  56. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/extending/datagrabber.rst +0 -0
  57. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/extending/extension.rst +0 -0
  58. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/extending/index.rst +0 -0
  59. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/extending/marker.rst +0 -0
  60. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/extending/masks.rst +0 -0
  61. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/extending/parcellations.rst +0 -0
  62. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/faq.rst +0 -0
  63. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/help.rst +0 -0
  64. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/images/junifer_logo.png +0 -0
  65. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/index.rst +0 -0
  66. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/installation.rst +0 -0
  67. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/links.inc +0 -0
  68. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/maintaining.rst +0 -0
  69. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/redirect.html +0 -0
  70. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/sphinxext/gh_substitutions.py +0 -0
  71. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/starting.rst +0 -0
  72. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/understanding/data.rst +0 -0
  73. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/understanding/datagrabber.rst +0 -0
  74. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/understanding/datareader.rst +0 -0
  75. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/understanding/index.rst +0 -0
  76. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/understanding/marker.rst +0 -0
  77. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/understanding/pipeline.rst +0 -0
  78. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/understanding/preprocess.rst +0 -0
  79. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/understanding/storage.rst +0 -0
  80. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/using/codeless.rst +0 -0
  81. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/using/index.rst +0 -0
  82. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/using/masks.rst +0 -0
  83. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/using/queueing.rst +0 -0
  84. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/using/running.rst +0 -0
  85. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/docs/whats_new.rst +0 -0
  86. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/examples/README.rst +0 -0
  87. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/examples/norun_hcpfc_pearson.py +0 -0
  88. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/examples/norun_ukbvm_gmd.py +0 -0
  89. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/examples/run_compute_parcel_mean.py +0 -0
  90. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/examples/run_datagrabber_bids_datalad.py +0 -0
  91. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/examples/run_ets_rss_marker.py +0 -0
  92. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/examples/run_junifer_julearn.py +0 -0
  93. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/examples/run_run_gmd_mean.py +0 -0
  94. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/examples/yamls/gmd_mean.yaml +0 -0
  95. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/examples/yamls/gmd_mean_htcondor.yaml +0 -0
  96. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/examples/yamls/ukb_gmd_mean.yaml +0 -0
  97. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/ignore_words.txt +0 -0
  98. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/__init__.py +0 -0
  99. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/api/__init__.py +0 -0
  100. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/api/cli.py +0 -0
  101. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/api/decorators.py +0 -0
  102. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/api/functions.py +0 -0
  103. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/api/parser.py +0 -0
  104. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/api/res/afni/3dAFNItoNIFTI +0 -0
  105. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/api/res/afni/3dRSFC +0 -0
  106. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/api/res/afni/3dReHo +0 -0
  107. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/api/res/afni/afni +0 -0
  108. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/api/res/afni/run_afni_docker.sh +0 -0
  109. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/api/res/run_conda.sh +0 -0
  110. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/api/tests/data/gmd_mean.yaml +0 -0
  111. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/api/tests/data/gmd_mean_htcondor.yaml +0 -0
  112. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/api/tests/test_api_utils.py +0 -0
  113. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/api/tests/test_cli.py +0 -0
  114. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/api/tests/test_functions.py +0 -0
  115. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/api/tests/test_parser.py +0 -0
  116. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/api/utils.py +0 -0
  117. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/configs/__init__.py +0 -0
  118. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/configs/juseless/__init__.py +0 -0
  119. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/configs/juseless/datagrabbers/__init__.py +0 -0
  120. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/configs/juseless/datagrabbers/aomic_id1000_vbm.py +0 -0
  121. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/configs/juseless/datagrabbers/camcan_vbm.py +0 -0
  122. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/configs/juseless/datagrabbers/ixi_vbm.py +0 -0
  123. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/configs/juseless/datagrabbers/tests/test_aomic_id1000_vbm.py +0 -0
  124. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/configs/juseless/datagrabbers/tests/test_camcan_vbm.py +0 -0
  125. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/configs/juseless/datagrabbers/tests/test_ixi_vbm.py +0 -0
  126. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/configs/juseless/datagrabbers/tests/test_ucla.py +0 -0
  127. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/configs/juseless/datagrabbers/tests/test_ukb_vbm.py +0 -0
  128. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/configs/juseless/datagrabbers/ucla.py +0 -0
  129. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/configs/juseless/datagrabbers/ukb_vbm.py +0 -0
  130. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/VOIs/meta/CogAC_VOIs.txt +0 -0
  131. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/VOIs/meta/CogAR_VOIs.txt +0 -0
  132. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/VOIs/meta/DMNBuckner_VOIs.txt +0 -0
  133. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/VOIs/meta/Dosenbach2010_MNI_VOIs.txt +0 -0
  134. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/VOIs/meta/Empathy_VOIs.txt +0 -0
  135. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/VOIs/meta/Motor_VOIs.txt +0 -0
  136. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/VOIs/meta/MultiTask_VOIs.txt +0 -0
  137. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/VOIs/meta/PhysioStress_VOIs.txt +0 -0
  138. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/VOIs/meta/Power2011_MNI_VOIs.txt +0 -0
  139. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/VOIs/meta/Rew_VOIs.txt +0 -0
  140. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/VOIs/meta/Somatosensory_VOIs.txt +0 -0
  141. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/VOIs/meta/ToM_VOIs.txt +0 -0
  142. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/VOIs/meta/VigAtt_VOIs.txt +0 -0
  143. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/VOIs/meta/WM_VOIs.txt +0 -0
  144. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/VOIs/meta/eMDN_VOIs.txt +0 -0
  145. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/VOIs/meta/eSAD_VOIs.txt +0 -0
  146. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/VOIs/meta/extDMN_VOIs.txt +0 -0
  147. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/__init__.py +0 -0
  148. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/coordinates.py +0 -0
  149. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/masks/vickery-patil/CAT12_IXI555_MNI152_TMP_GS_GMprob0.2_clean.nii.gz +0 -0
  150. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/masks/vickery-patil/CAT12_IXI555_MNI152_TMP_GS_GMprob0.2_clean_3mm.nii.gz +0 -0
  151. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/masks/vickery-patil/GMprob0.2_cortex_3mm_NA_rm.nii.gz +0 -0
  152. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/masks.py +0 -0
  153. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/parcellations.py +0 -0
  154. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/tests/test_coordinates.py +0 -0
  155. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/tests/test_data_utils.py +0 -0
  156. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/tests/test_masks.py +0 -0
  157. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/tests/test_parcellations.py +0 -0
  158. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/data/utils.py +0 -0
  159. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/datagrabber/__init__.py +0 -0
  160. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/datagrabber/aomic/__init__.py +0 -0
  161. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/datagrabber/aomic/id1000.py +0 -0
  162. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/datagrabber/aomic/piop1.py +0 -0
  163. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/datagrabber/aomic/piop2.py +0 -0
  164. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/datagrabber/aomic/tests/test_id1000.py +0 -0
  165. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/datagrabber/aomic/tests/test_piop1.py +0 -0
  166. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/datagrabber/aomic/tests/test_piop2.py +0 -0
  167. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/datagrabber/base.py +0 -0
  168. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/datagrabber/datalad_base.py +0 -0
  169. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/datagrabber/hcp1200/__init__.py +0 -0
  170. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/datagrabber/hcp1200/datalad_hcp1200.py +0 -0
  171. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/datagrabber/hcp1200/hcp1200.py +0 -0
  172. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/datagrabber/hcp1200/tests/test_hcp1200.py +0 -0
  173. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/datagrabber/multiple.py +0 -0
  174. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/datagrabber/pattern.py +0 -0
  175. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/datagrabber/pattern_datalad.py +0 -0
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  229. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/markers/sphere_aggregation.py +0 -0
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  237. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/markers/tests/test_collection.py +0 -0
  238. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/markers/tests/test_ets_rss.py +0 -0
  239. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/markers/tests/test_marker_utils.py +0 -0
  240. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/markers/tests/test_markers_base.py +0 -0
  241. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/markers/tests/test_parcel_aggregation.py +0 -0
  242. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/markers/tests/test_sphere_aggregation.py +0 -0
  243. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/markers/utils.py +0 -0
  244. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/onthefly/__init__.py +0 -0
  245. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/onthefly/tests/test_read_transform.py +0 -0
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  247. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/pipeline/pipeline_step_mixin.py +0 -0
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  250. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/pipeline/tests/test_registry.py +0 -0
  251. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/pipeline/tests/test_update_meta_mixin.py +0 -0
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  264. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/storage/pandas_base.py +0 -0
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  266. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/storage/tests/test_hdf5.py +0 -0
  267. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/storage/tests/test_pandas_base.py +0 -0
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  285. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/utils/logging.py +0 -0
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  300. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/tools/create_hcp1200_example_dataset.py +0 -0
  301. {junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/tox.ini +0 -0
{junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: junifer
3
- Version: 0.0.4.dev11
3
+ Version: 0.0.4.dev15
4
4
  Summary: JUelich NeuroImaging FEature extractoR
5
5
  Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
6
6
  Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
junifer-0.0.4.dev15/docs/changes/newsfragments/248.change ADDED
@@ -0,0 +1 @@
1
+ Add ``feature_md5`` argument to :func:`.read_transform()` by `Synchon Mandal`_
junifer-0.0.4.dev15/junifer/_version.py ADDED
@@ -0,0 +1,4 @@
1
+ # file generated by setuptools_scm
2
+ # don't change, don't track in version control
3
+ __version__ = version = '0.0.4.dev15'
4
+ __version_tuple__ = version_tuple = (0, 0, 4, 'dev15')
{junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer/onthefly/read_transform.py RENAMED
@@ -17,8 +17,9 @@ if TYPE_CHECKING:
17
17
 
18
18
  def read_transform(
19
19
  storage: Type["BaseFeatureStorage"],
20
- feature_name: str,
21
20
  transform: str,
21
+ feature_name: Optional[str] = None,
22
+ feature_md5: Optional[str] = None,
22
23
  transform_args: Optional[Tuple] = None,
23
24
  transform_kw_args: Optional[Dict] = None,
24
25
  ) -> pd.DataFrame:
@@ -28,11 +29,13 @@ def read_transform(
28
29
  ----------
29
30
  storage : storage-like
30
31
  The storage class, for example, SQLiteFeatureStorage.
31
- feature_name : str
32
- Name of the feature to read.
33
32
  transform : str
34
33
  The kind of transform formatted as ``<package>_<function>``,
35
34
  for example, ``bctpy_degrees_und``.
35
+ feature_name : str, optional
36
+ Name of the feature to read (default None).
37
+ feature_md5 : str, optional
38
+ MD5 hash of the feature to read (default None).
36
39
  transform_args : tuple, optional
37
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  The positional arguments for the callable of ``transform``
38
41
  (default None).
@@ -62,7 +65,9 @@ def read_transform(
62
65
  transform_kw_args = transform_kw_args or {}
63
66
 
64
67
  # Read storage
65
- stored_data = storage.read(feature_name=feature_name) # type: ignore
68
+ stored_data = storage.read(
69
+ feature_name=feature_name, feature_md5=feature_md5
70
+ ) # type: ignore
66
71
  # Retrieve package and function
67
72
  package, func_str = transform.split("_", 1)
68
73
  # Condition for package
@@ -105,7 +110,8 @@ def read_transform(
105
110
  # Apply function and store subject-wise
106
111
  output_list = []
107
112
  logger.debug(
108
- f"Computing '{package}.{func_str}' for feature {feature_name} ..."
113
+ f"Computing '{package}.{func_str}' for feature "
114
+ f"{feature_name or feature_md5} ..."
109
115
  )
110
116
  for subject in range(stored_data["data"].shape[2]):
111
117
  output = func(
@@ -119,7 +125,8 @@ def read_transform(
119
125
  idx_df = pd.DataFrame(data=stored_data["element"])
120
126
  # Create multiindex from dataframe
121
127
  logger.debug(
122
- f"Generating pandas.MultiIndex for feature {feature_name} ..."
128
+ "Generating pandas.MultiIndex for feature "
129
+ f"{feature_name or feature_md5} ..."
123
130
  )
124
131
  data_idx = pd.MultiIndex.from_frame(df=idx_df)
125
132
 
{junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: junifer
3
- Version: 0.0.4.dev11
3
+ Version: 0.0.4.dev15
4
4
  Summary: JUelich NeuroImaging FEature extractoR
5
5
  Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
6
6
  Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
{junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/junifer.egg-info/SOURCES.txt RENAMED
@@ -58,6 +58,7 @@ docs/changes/contributors.inc
58
58
  docs/changes/newsfragments/.gitignore
59
59
  docs/changes/newsfragments/233.bugfix
60
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  docs/changes/newsfragments/247.doc
61
+ docs/changes/newsfragments/248.change
61
62
  docs/extending/coordinates.rst
62
63
  docs/extending/datagrabber.rst
63
64
  docs/extending/extension.rst
junifer-0.0.4.dev11/junifer/_version.py DELETED
@@ -1,4 +0,0 @@
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- # file generated by setuptools_scm
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- # don't change, don't track in version control
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- __version__ = version = '0.0.4.dev11'
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- __version_tuple__ = version_tuple = (0, 0, 4, 'dev11')
{junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/.gitignore RENAMED
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{junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/.gitmodules RENAMED
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{junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/AUTHORS.rst RENAMED
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{junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/LICENSE.md RENAMED
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{junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/README.md RENAMED
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{junifer-0.0.4.dev11 → junifer-0.0.4.dev15}/codecov.yml RENAMED
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