junban 1.0.2__tar.gz → 1.0.3__tar.gz

{junban-1.0.2 → junban-1.0.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: junban
-Version: 1.0.2
+Version: 1.0.3
 Summary: Junban – Simple Sequential Python Workflows
 Author-email: Sebastian Franz <sebastian.franz@tum.de>
 Project-URL: Issues, https://github.com/biocentral/junban/issues

{junban-1.0.2 → junban-1.0.3}/junban/pipeline.py

@@ -41,9 +41,13 @@ class Pipeline(Generic[C]):
         current_context = context
         for step in self.steps:
             try:
-                self._log_info(f"[{self.name}] {step.get_start_message()}")
-                current_context = step.run(current_context)
-                self._log_info(f"[{self.name}] {step.get_end_message()}")
+                skip = step.maybe_skip(context)
+                if skip:
+                    self._log_info(f"[{self.name}] Skipping..")
+                else:
+                    self._log_info(f"[{self.name}] {step.get_start_message()}")
+                    current_context = step.run(current_context)
+                    self._log_info(f"[{self.name}] {step.get_end_message()}")
             except AssertionError as e:
                 self._log_error(f"[{self.name}] Assertion error in step {step.__class__.__name__}: {str(e)}")
                 raise

{junban-1.0.2 → junban-1.0.3}/junban/pipeline_step.py

@@ -20,6 +20,11 @@ class PipelineStep(ABC, Generic[C]):
         """
         return True
 
+    def _skip(self, context: C) -> bool:
+        """ If this method returns True, the pipeline step will be skipped entirely.
+        Should not modify the context in any way."""
+        return False
+
     @abstractmethod
     def get_start_message(self) -> str:
         raise NotImplementedError
@@ -32,6 +37,9 @@ class PipelineStep(ABC, Generic[C]):
     def _execute(self, context: C) -> C:
         raise NotImplementedError
 
+    def maybe_skip(self, context: C) -> bool:
+        return self._skip(context)
+
     def run(self, context: C) -> C:
         if not self._check_entry_assumptions(context):
             assert False, "Entry assumptions not met"

{junban-1.0.2 → junban-1.0.3}/junban.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: junban
-Version: 1.0.2
+Version: 1.0.3
 Summary: Junban – Simple Sequential Python Workflows
 Author-email: Sebastian Franz <sebastian.franz@tum.de>
 Project-URL: Issues, https://github.com/biocentral/junban/issues

{junban-1.0.2 → junban-1.0.3}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "junban"
-version = "1.0.2"
+version = "1.0.3"
 description = "Junban – Simple Sequential Python Workflows"
 authors = [
     {name = "Sebastian Franz", email = "sebastian.franz@tum.de"},