julearn 0.3.6.dev42__tar.gz → 0.3.6.dev47__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (261) hide show
  1. julearn-0.3.6.dev47/.github/workflows/docs-preview.yml +48 -0
  2. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/PKG-INFO +1 -1
  3. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/conf.py +1 -15
  4. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/poly.py +16 -10
  5. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/_version.py +3 -3
  6. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn.egg-info/PKG-INFO +1 -1
  7. julearn-0.3.6.dev42/.github/workflows/docs-preview.yml +0 -43
  8. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/.github/ISSUE_TEMPLATE/bug_report.yaml +0 -0
  9. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/.github/ISSUE_TEMPLATE/config.yml +0 -0
  10. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/.github/ISSUE_TEMPLATE/documentation_request.yaml +0 -0
  11. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/.github/ISSUE_TEMPLATE/feature_request.yaml +0 -0
  12. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/.github/dependabot.yml +0 -0
  13. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/.github/workflows/check-stale.yml +0 -0
  14. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/.github/workflows/ci-docs.yml +0 -0
  15. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/.github/workflows/ci.yml +0 -0
  16. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/.github/workflows/docs.yml +0 -0
  17. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/.github/workflows/lint.yml +0 -0
  18. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/.github/workflows/publish.yml +0 -0
  19. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/.gitignore +0 -0
  20. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/.pre-commit-config.yaml +0 -0
  21. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/AUTHORS.rst +0 -0
  22. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/LICENSE.md +0 -0
  23. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/README.md +0 -0
  24. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/codecov.yml +0 -0
  25. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/Makefile +0 -0
  26. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/_static/css/custom.css +0 -0
  27. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/_static/css/version_selector.css +0 -0
  28. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/_static/js/custom.js +0 -0
  29. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/_templates/class.rst +0 -0
  30. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/_templates/function.rst +0 -0
  31. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/_templates/function_warning.rst +0 -0
  32. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/_templates/protocol.rst +0 -0
  33. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/_templates/type.rst +0 -0
  34. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/_templates/versions.html +0 -0
  35. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/api/base.rst +0 -0
  36. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/api/config.rst +0 -0
  37. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/api/index.rst +0 -0
  38. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/api/inspect.rst +0 -0
  39. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/api/main.rst +0 -0
  40. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/api/model_selection.rst +0 -0
  41. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/api/models.rst +0 -0
  42. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/api/pipeline.rst +0 -0
  43. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/api/prepare.rst +0 -0
  44. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/api/scoring.rst +0 -0
  45. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/api/stats.rst +0 -0
  46. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/api/transformers.rst +0 -0
  47. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/api/utils.rst +0 -0
  48. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/api/viz.rst +0 -0
  49. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/available_pipeline_steps.rst +0 -0
  50. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/changes/contributors.inc +0 -0
  51. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/changes/newsfragments/.gitignore +0 -0
  52. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/changes/newsfragments/301.misc +0 -0
  53. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/changes/newsfragments/303.feature +0 -0
  54. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/changes/newsfragments/307.bugfix +0 -0
  55. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/changes/newsfragments/307.misc +0 -0
  56. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/configuration.rst +0 -0
  57. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/contributing.rst +0 -0
  58. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/examples.rst +0 -0
  59. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/faq.rst +0 -0
  60. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/getting_started.rst +0 -0
  61. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/images/corrected_ttest.png +0 -0
  62. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/images/final_estimator.png +0 -0
  63. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/images/iris_X.png +0 -0
  64. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/images/iris_df.png +0 -0
  65. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/images/iris_y.png +0 -0
  66. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/images/joblib_htcondor/condor_q.png +0 -0
  67. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/images/joblib_htcondor/ui_main.png +0 -0
  68. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/images/joblib_htcondor/ui_open.png +0 -0
  69. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/images/joblib_htcondor/ui_stacked.png +0 -0
  70. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/images/julearn_logo.png +0 -0
  71. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/images/julearn_logo_calm.png +0 -0
  72. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/images/julearn_logo_confbias.png +0 -0
  73. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/images/julearn_logo_cv.png +0 -0
  74. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/images/julearn_logo_generalization.png +0 -0
  75. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/images/julearn_logo_it.png +0 -0
  76. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/images/julearn_logo_ml.png +0 -0
  77. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/images/julearn_logo_mlit.png +0 -0
  78. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/images/multiple_scorers_run_cv.png +0 -0
  79. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/images/plot_scores.png +0 -0
  80. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/images/scores_run_cv.png +0 -0
  81. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/images/scores_run_cv_splitter.png +0 -0
  82. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/images/scores_run_cv_train.png +0 -0
  83. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/index.rst +0 -0
  84. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/links.inc +0 -0
  85. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/maintaining.rst +0 -0
  86. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/poly_files/patches/version_banner.html +0 -0
  87. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/poly_files/patches/version_banner_rtd.html +0 -0
  88. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/poly_files/patches/versions.html +0 -0
  89. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/poly_files/patches/versions_rtd.html +0 -0
  90. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/poly_files/templates/index.html +0 -0
  91. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/redirect.html +0 -0
  92. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/selected_deeper_topics/CBPM.rst +0 -0
  93. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/selected_deeper_topics/confound_removal.rst +0 -0
  94. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/selected_deeper_topics/cross_validation_splitter.rst +0 -0
  95. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/selected_deeper_topics/hyperparameter_tuning.rst +0 -0
  96. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/selected_deeper_topics/index.rst +0 -0
  97. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/selected_deeper_topics/joblib.rst +0 -0
  98. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/selected_deeper_topics/model_inspect.rst +0 -0
  99. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/selected_deeper_topics/stacked_models.rst +0 -0
  100. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/selected_deeper_topics/target_transformers.rst +0 -0
  101. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/what_really_need_know/cross_validation.rst +0 -0
  102. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/what_really_need_know/data.rst +0 -0
  103. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/what_really_need_know/index.rst +0 -0
  104. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/what_really_need_know/model_comparison.rst +0 -0
  105. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/what_really_need_know/model_evaluation.rst +0 -0
  106. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/what_really_need_know/pipeline.rst +0 -0
  107. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/docs/whats_new.rst +0 -0
  108. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/00_starting/README.rst +0 -0
  109. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/00_starting/plot_cm_acc_multiclass.py +0 -0
  110. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/00_starting/plot_example_regression.py +0 -0
  111. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/00_starting/plot_stratified_kfold_reg.py +0 -0
  112. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/00_starting/run_combine_pandas.py +0 -0
  113. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/00_starting/run_grouped_cv.py +0 -0
  114. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/00_starting/run_simple_binary_classification.py +0 -0
  115. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/01_model_comparison/README.rst +0 -0
  116. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/01_model_comparison/plot_simple_model_comparison.py +0 -0
  117. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/02_inspection/README.rst +0 -0
  118. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/02_inspection/plot_groupcv_inspect_svm.py +0 -0
  119. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/02_inspection/plot_inspect_random_forest.py +0 -0
  120. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/02_inspection/plot_preprocess.py +0 -0
  121. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/02_inspection/run_binary_inspect_folds.py +0 -0
  122. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/03_complex_models/README.rst +0 -0
  123. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/03_complex_models/run_apply_to_target.py +0 -0
  124. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/03_complex_models/run_example_pca_featsets.py +0 -0
  125. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/03_complex_models/run_generate_target.py +0 -0
  126. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/03_complex_models/run_hyperparameter_multiple_grids.py +0 -0
  127. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/03_complex_models/run_hyperparameter_tuning.py +0 -0
  128. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/03_complex_models/run_hyperparameter_tuning_bayessearch.py +0 -0
  129. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/03_complex_models/run_stacked_models.py +0 -0
  130. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/04_confounds/README.rst +0 -0
  131. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/04_confounds/plot_confound_removal_classification.py +0 -0
  132. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/04_confounds/run_return_confounds.py +0 -0
  133. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/05_customization/README.rst +0 -0
  134. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/05_customization/run_custom_scorers_regression.py +0 -0
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  136. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/99_docs/run_cbpm_docs.py +0 -0
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  145. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/examples/99_docs/run_stacked_models_docs.py +0 -0
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  157. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/base/tests/test_column_types.py +0 -0
  158. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/config.py +0 -0
  159. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/conftest.py +0 -0
  160. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/external/optuna_searchcv.py +0 -0
  161. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/inspect/__init__.py +0 -0
  162. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/inspect/_cv.py +0 -0
  163. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/inspect/_pipeline.py +0 -0
  164. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/inspect/_preprocess.py +0 -0
  165. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/inspect/inspector.py +0 -0
  166. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/inspect/tests/test_cv.py +0 -0
  167. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/inspect/tests/test_inspector.py +0 -0
  168. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/inspect/tests/test_pipeline.py +0 -0
  169. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/inspect/tests/test_preprocess.py +0 -0
  170. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/model_selection/__init__.py +0 -0
  171. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/model_selection/_optuna_searcher.py +0 -0
  172. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/model_selection/_skopt_searcher.py +0 -0
  173. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/model_selection/available_searchers.py +0 -0
  174. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/model_selection/continuous_stratified_kfold.py +0 -0
  175. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/model_selection/final_model_cv.py +0 -0
  176. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/model_selection/stratified_bootstrap.py +0 -0
  177. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/model_selection/tests/test_available_searchers.py +0 -0
  178. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/model_selection/tests/test_continous_stratified_kfold.py +0 -0
  179. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/model_selection/tests/test_final_model_cv.py +0 -0
  180. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/model_selection/tests/test_optuna_searcher.py +0 -0
  181. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/model_selection/tests/test_skopt_searcher.py +0 -0
  182. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/model_selection/tests/test_stratified_bootstrap.py +0 -0
  183. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/model_selection/utils.py +0 -0
  184. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/models/__init__.py +0 -0
  185. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/models/available_models.py +0 -0
  186. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/models/dynamic.py +0 -0
  187. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/models/tests/test_available_models.py +0 -0
  188. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/models/tests/test_dynamic.py +0 -0
  189. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/models/tests/test_models.py +0 -0
  190. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/pipeline/__init__.py +0 -0
  191. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/pipeline/merger.py +0 -0
  192. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/pipeline/pipeline_creator.py +0 -0
  193. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/pipeline/target_pipeline.py +0 -0
  194. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/pipeline/target_pipeline_creator.py +0 -0
  195. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/pipeline/tests/test_merger.py +0 -0
  196. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/pipeline/tests/test_pipeline_creator.py +0 -0
  197. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/pipeline/tests/test_target_pipeline.py +0 -0
  198. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/pipeline/tests/test_target_pipeline_creator.py +0 -0
  199. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/prepare.py +0 -0
  200. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/scoring/__init__.py +0 -0
  201. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/scoring/available_scorers.py +0 -0
  202. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/scoring/metrics.py +0 -0
  203. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/scoring/tests/test_available_scorers.py +0 -0
  204. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/scoring/tests/test_metrics.py +0 -0
  205. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/stats/__init__.py +0 -0
  206. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/stats/corrected_ttest.py +0 -0
  207. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/stats/tests/test_corrected_ttest.py +0 -0
  208. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/tests/test_api.py +0 -0
  209. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/tests/test_config.py +0 -0
  210. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/tests/test_prepare.py +0 -0
  211. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/__init__.py +0 -0
  212. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/available_transformers.py +0 -0
  213. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/cbpm.py +0 -0
  214. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/confound_remover.py +0 -0
  215. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/dataframe/__init__.py +0 -0
  216. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/dataframe/change_column_types.py +0 -0
  217. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/dataframe/drop_columns.py +0 -0
  218. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/dataframe/filter_columns.py +0 -0
  219. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/dataframe/pick_columns.py +0 -0
  220. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/dataframe/set_column_types.py +0 -0
  221. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/dataframe/tests/test_change_column_types.py +0 -0
  222. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/dataframe/tests/test_drop_columns.py +0 -0
  223. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/dataframe/tests/test_filter_columns.py +0 -0
  224. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/dataframe/tests/test_set_column_types.py +0 -0
  225. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/ju_column_transformer.py +0 -0
  226. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/target/__init__.py +0 -0
  227. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/target/available_target_transformers.py +0 -0
  228. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/target/ju_generated_target_model.py +0 -0
  229. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/target/ju_target_transformer.py +0 -0
  230. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/target/ju_transformed_target_model.py +0 -0
  231. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/target/target_confound_remover.py +0 -0
  232. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/target/tests/test_available_target_transformers.py +0 -0
  233. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/target/tests/test_ju_generated_target_model.py +0 -0
  234. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/target/tests/test_ju_target_transformer.py +0 -0
  235. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/target/tests/test_ju_transformed_target_model.py +0 -0
  236. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/target/tests/test_target_confound_remover.py +0 -0
  237. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/tests/test_available_transformers.py +0 -0
  238. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/tests/test_cbpm.py +0 -0
  239. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/tests/test_confounds.py +0 -0
  240. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/transformers/tests/test_jucolumntransformers.py +0 -0
  241. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/utils/__init__.py +0 -0
  242. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/utils/_cv.py +0 -0
  243. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/utils/checks.py +0 -0
  244. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/utils/logging.py +0 -0
  245. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/utils/testing.py +0 -0
  246. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/utils/tests/test_logging.py +0 -0
  247. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/utils/tests/test_version.py +0 -0
  248. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/utils/typing.py +0 -0
  249. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/utils/versions.py +0 -0
  250. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/viz/__init__.py +0 -0
  251. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/viz/_scores.py +0 -0
  252. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn/viz/res/julearn_logo_generalization.png +0 -0
  253. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn.egg-info/SOURCES.txt +0 -0
  254. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn.egg-info/dependency_links.txt +0 -0
  255. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn.egg-info/requires.txt +0 -0
  256. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/julearn.egg-info/top_level.txt +0 -0
  257. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/pyproject.toml +0 -0
  258. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/setup.cfg +0 -0
  259. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/setup.py +0 -0
  260. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/tox.ini +0 -0
  261. {julearn-0.3.6.dev42 → julearn-0.3.6.dev47}/uv.lock +0 -0
@@ -0,0 +1,48 @@
1
+ name: Build and preview docs
2
+
3
+ on:
4
+ push:
5
+ branches-ignore:
6
+ - "main"
7
+ tags-ignore:
8
+ - v*
9
+ pull_request:
10
+ types:
11
+ - opened
12
+ - reopened
13
+ - synchronize
14
+ - closed
15
+
16
+ concurrency: preview-${{ github.ref }}
17
+
18
+ jobs:
19
+ build-docs:
20
+ runs-on: ubuntu-latest
21
+ steps:
22
+ - uses: actions/checkout@v6
23
+ with:
24
+ fetch-depth: 0
25
+
26
+ - uses: actions/setup-python@v6
27
+ if: github.event.action != 'closed' # We don't need the build if we know the preview will be removed
28
+ with:
29
+ python-version-file: "pyproject.toml"
30
+
31
+ - name: Install uv
32
+ if: github.event.action != 'closed' # We don't need the build if we know the preview will be removed
33
+ uses: astral-sh/setup-uv@08807647e7069bb48b6ef5acd8ec9567f424441b # v8.1.0
34
+
35
+ - name: Install Python dependencies
36
+ if: github.event.action != 'closed' # We don't need the build if we know the preview will be removed
37
+ run: |
38
+ uv sync --locked --extra docs
39
+
40
+ - name: Test build docs
41
+ if: github.event.action != 'closed' # We don't need the build if we know the preview will be removed
42
+ run: |
43
+ uv run make -C docs/ local
44
+
45
+ - uses: rossjrw/pr-preview-action@v1
46
+ with:
47
+ source-dir: docs/_build/dev
48
+ if: github.event_name == 'pull_request'
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: julearn
3
- Version: 0.3.6.dev42
3
+ Version: 0.3.6.dev47
4
4
  Summary: Juelich Machine Learning Library
5
5
  Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Sami Hamdan <s.hamdan@fz-juelich.de>
6
6
  Maintainer-email: Sami Hamdan <s.hamdan@fz-juelich.de>
@@ -34,25 +34,11 @@ else:
34
34
  # process the loaded version information as you wish
35
35
  html_context = globals().get("html_context", {})
36
36
 
37
- tag_revisions = [
38
- rev
39
- for rev in html_context["revisions"]
40
- if rev.type_ == GitRefType.TAG and rev.name.startswith("v")
41
- ]
42
-
43
- latest = sorted(tag_revisions, key=lambda x: x.name)[
44
- -1
45
- ] # latest by version
46
-
47
37
  if (
48
38
  html_context["current"].type_ == GitRefType.BRANCH
49
39
  and html_context["current"].name == "main"
50
40
  ):
51
- major, minor, revision = latest.name.split("v")[-1].split(
52
- "."
53
- ) # get version number from tag name
54
- next_dev_version = f"{major}.{minor}.{int(revision) + 1}.dev0"
55
- release = next_dev_version
41
+ release = os.getenv("SETUPTOOLS_SCM_PRETEND_VERSION_FOR_JULEARN")
56
42
  else:
57
43
  release = html_context["current"].name
58
44
 
@@ -18,7 +18,7 @@ from sphinx_polyversion.git import (
18
18
  )
19
19
  from sphinx_polyversion.pyvenv import Pip
20
20
  from sphinx_polyversion.setuptools_scm import SetuptoolsScmDriver
21
- from sphinx_polyversion.sphinx import SphinxBuilder
21
+ from sphinx_polyversion.sphinx import Placeholder, SphinxBuilder
22
22
 
23
23
 
24
24
  #: Regex matching the branches to build docs for
@@ -69,9 +69,16 @@ out_dir = root / OUTPUT_DIR
69
69
  logger.info(f"Docs Source directory: {docs_src}")
70
70
  logger.info(f"Output directory: {out_dir}")
71
71
 
72
+
73
+ # Command to ensure that the output directory is clean before building
74
+ # (otherswise old files may remain if they were removed in the new version).
75
+ pre_cmd = ["rm", "-r", Placeholder.OUTPUT_DIR]
76
+
72
77
  # Builders by version:
73
78
  BUILDER = {
74
- None: SphinxBuilder(docs_src, args=SPHINX_ARGS.split()), # default
79
+ None: SphinxBuilder(
80
+ docs_src, args=SPHINX_ARGS.split(), pre_cmd=pre_cmd
81
+ ), # default
75
82
  }
76
83
 
77
84
 
@@ -311,6 +318,7 @@ if not BUILD_ALL:
311
318
  logger.info(f"Updated TAG_REGEX to: {TAG_REGEX}")
312
319
 
313
320
 
321
+ #
314
322
  #: Data passed to templates
315
323
  def data(driver, rev, env):
316
324
  """Create a factory for data passed to templates.
@@ -362,7 +370,7 @@ SetuptoolsScmDriver(
362
370
  # static_dir=static_dir,
363
371
  data_factory=data,
364
372
  root_data_factory=root_data,
365
- ).run()
373
+ ).run(sequential=SEQUENTIAL)
366
374
 
367
375
  if NO_PATCH:
368
376
  logger.info("NO_PATCH is set, skipping HTML patching.")
@@ -538,13 +546,11 @@ for built_dir in out_dir.iterdir():
538
546
  if built_dir.is_dir():
539
547
  if built_dir.name.startswith("v"):
540
548
  logger.info(f"Patching built version directory: {built_dir.name}")
541
- current_version = next(
542
- [
543
- tag
544
- for tag in built_versions["tags"]
545
- if tag.name == built_dir.name
546
- ]
547
- )
549
+ current_version = [ # noqa: RUF015
550
+ tag
551
+ for tag in built_versions["tags"]
552
+ if tag.name == built_dir.name
553
+ ][0]
548
554
  if int(built_dir.name.split(".")[1]) < 3:
549
555
  # Old read_the_docs template
550
556
  version_rtd_html = versions_rtd_template.render(
@@ -18,7 +18,7 @@ version_tuple: tuple[int | str, ...]
18
18
  commit_id: str | None
19
19
  __commit_id__: str | None
20
20
 
21
- __version__ = version = '0.3.6.dev42'
22
- __version_tuple__ = version_tuple = (0, 3, 6, 'dev42')
21
+ __version__ = version = '0.3.6.dev47'
22
+ __version_tuple__ = version_tuple = (0, 3, 6, 'dev47')
23
23
 
24
- __commit_id__ = commit_id = 'g9e05fcdb2'
24
+ __commit_id__ = commit_id = 'g5501ac265'
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: julearn
3
- Version: 0.3.6.dev42
3
+ Version: 0.3.6.dev47
4
4
  Summary: Juelich Machine Learning Library
5
5
  Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Sami Hamdan <s.hamdan@fz-juelich.de>
6
6
  Maintainer-email: Sami Hamdan <s.hamdan@fz-juelich.de>
@@ -1,43 +0,0 @@
1
- name: Build and preview docs
2
-
3
- on:
4
- push:
5
- branches-ignore:
6
- - 'main'
7
- tags-ignore:
8
- - v*
9
- pull_request:
10
- types:
11
- - opened
12
- - reopened
13
- - synchronize
14
- - closed
15
-
16
- concurrency: preview-${{ github.ref }}
17
-
18
- jobs:
19
- build-docs:
20
- runs-on: ubuntu-latest
21
- steps:
22
- - uses: actions/checkout@v6
23
- with:
24
- fetch-depth: 0
25
- - uses: actions/setup-python@v6
26
- with:
27
- python-version-file: "pyproject.toml"
28
-
29
- - name: Install uv
30
- uses: astral-sh/setup-uv@08807647e7069bb48b6ef5acd8ec9567f424441b # v8.1.0
31
-
32
- - name: Install Python dependencies
33
- run: |
34
- uv sync --locked --extra docs
35
-
36
- - name: Test build docs
37
- run: |
38
- uv run make -C docs/ local
39
-
40
- - uses: rossjrw/pr-preview-action@v1
41
- with:
42
- source-dir: docs/_build/dev
43
- if: github.event_name == 'pull_request'
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