julearn 0.3.5.dev28__tar.gz → 0.3.5.dev56__tar.gz

julearn-0.3.5.dev56/.github/dependabot.yml

@@ -0,0 +1,14 @@
+# Set update schedule for GitHub Actions
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      # Check for updates to GitHub Actions every week
+      interval: "weekly"
+    # Group updates to avoid extra PRs
+    groups:
+      # Group name
+      actions:
+        patterns:
+          - "*"

{julearn-0.3.5.dev28 → julearn-0.3.5.dev56}/.github/workflows/check-stale.yml

@@ -1,4 +1,4 @@
-name: 'Close stale issues'
+name: Close stale issues
 
 on:
   schedule:

{julearn-0.3.5.dev28 → julearn-0.3.5.dev56}/.github/workflows/ci-docs.yml

@@ -4,18 +4,29 @@ on:
   push:
     paths-ignore:
       - 'julearn/**'
+      - 'docs/changes/newsfragments/**'
       - '.github/workflows/**'
+      - 'tox.ini'
+      - 'pyproject.toml'
   pull_request:
     paths-ignore:
       - 'julearn/**'
+      - 'docs/changes/newsfragments/**'
       - '.github/workflows/**'
+      - 'tox.ini'
+      - 'pyproject.toml'
 jobs:
   run-tests:
     runs-on: ubuntu-latest
     strategy:
       fail-fast: false
       matrix:
-        python-version: ['3.8', '3.9', '3.10', '3.11']
+        python-version:
+          - '3.9'
+          - '3.10'
+          - '3.11'
+          - '3.12'
+          - '3.13'
     steps:
       - run: 'echo "No build required"'
       - name: Create mock coverage.xml file
@@ -40,11 +51,11 @@ jobs:
           echo '</package>' >> coverage.xml
           echo '</packages>' >> coverage.xml
           echo '</coverage>' >> coverage.xml
-        if: matrix.python-version == 3.10
+        if: matrix.python-version == 3.12
       - name: Upload mock coverage to Codecov
-        uses: codecov/codecov-action@v4
+        uses: codecov/codecov-action@v5
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
           fail_ci_if_error: true
           flags: docs
-        if: success() && matrix.python-version == 3.10
+        if: success() && matrix.python-version == 3.12

{julearn-0.3.5.dev28 → julearn-0.3.5.dev56}/.github/workflows/ci.yml

@@ -5,10 +5,14 @@ on:
     paths:
       - 'julearn/**'
       - '.github/workflows/**'
+      - 'tox.ini'
+      - 'pyproject.toml'
   pull_request:
     paths:
       - 'julearn/**'
       - '.github/workflows/**'
+      - 'tox.ini'
+      - 'pyproject.toml'
 
 jobs:
   build:
@@ -16,26 +20,28 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ['3.8', '3.9', '3.10', '3.11']
+        python-version:
+          - '3.9'
+          - '3.10'
+          - '3.11'
+          - '3.12'
+          - '3.13'
 
     steps:
-    - name: Checkout repository
-      uses: actions/checkout@v3
-    - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v4
+    - uses: actions/checkout@v5
+    - uses: actions/setup-python@v5
       with:
         python-version: ${{ matrix.python-version }}
-    - name: Install dependencies
+    - name: Install Python dependencies
       run: |
         python -m pip install --upgrade pip setuptools wheel
         python -m pip install tox tox-gh-actions
     - name: Test with tox
       run: |
         tox
-    - name: Upload coverage to Codecov
-      uses: codecov/codecov-action@v4
+    - uses: codecov/codecov-action@v5
       with:
         token: ${{ secrets.CODECOV_TOKEN }}
         fail_ci_if_error: true
         flags: julearn
-      if: success() && matrix.python-version == 3.10
+      if: success() && matrix.python-version == 3.12

{julearn-0.3.5.dev28 → julearn-0.3.5.dev56}/.github/workflows/docs-preview.yml

@@ -19,23 +19,20 @@ jobs:
   build-docs:
     runs-on: ubuntu-latest
     steps:
-    - name: Checkout source
-      uses: actions/checkout@v3
+    - uses: actions/checkout@v5
       with:
         fetch-depth: 0
-    - name: Set up Python 3.10
-      uses: actions/setup-python@v4
+    - uses: actions/setup-python@v5
       with:
-        python-version: '3.10'
-    - name: Install dependencies
+          python-version: "3.x"
+    - name: Install Python dependencies
       run: |
         python -m pip install --upgrade pip setuptools wheel
         python -m pip install -e .[docs,viz]
     - name: Test build docs
       run: |
         BUILDDIR=_build/main make -C docs/ local
-    - name: Deploy preview
-      if: github.event_name == 'pull_request'
-      uses: rossjrw/pr-preview-action@v1
+    - uses: rossjrw/pr-preview-action@v1
       with:
         source-dir: docs/_build/main
+      if: github.event_name == 'pull_request'

{julearn-0.3.5.dev28 → julearn-0.3.5.dev56}/.github/workflows/docs.yml

@@ -8,21 +8,20 @@ on:
     # Sequence of patterns matched against refs/tags
     tags:
       - v*
+  workflow_dispatch: {}
 
 jobs:
   build-docs:
     runs-on: ubuntu-latest
     steps:
-    - name: Checkout source
-      uses: actions/checkout@v3
+    - uses: actions/checkout@v5
       with:
         # require all of history to see all tagged versions' docs
         fetch-depth: 0
-    - name: Set up Python 3.10
-      uses: actions/setup-python@v4
+    - uses: actions/setup-python@v5
       with:
-        python-version: '3.10'
-    - name: Install dependencies
+        python-version: "3.x"
+    - name: Install Python dependencies
       run: |
         python -m pip install --upgrade pip setuptools wheel
         python -m pip install -e .[docs,viz]
@@ -30,7 +29,7 @@ jobs:
     - name: Checkout gh-pages
       # As we already did a deploy of gh-pages above, it is guaranteed to be there
       # so check it out so we can selectively build docs below
-      uses: actions/checkout@v3
+      uses: actions/checkout@v5
       with:
           ref: gh-pages
           path: docs/_build
@@ -40,8 +39,7 @@ jobs:
         make -C docs/ html
         touch docs/_build/.nojekyll
         cp docs/redirect.html docs/_build/index.html
-    - name: Publish docs to gh-pages
-      uses: peaceiris/actions-gh-pages@v3
+    - uses: peaceiris/actions-gh-pages@v3
       with:
         github_token: ${{ secrets.GITHUB_TOKEN }}
         publish_dir: docs/_build

{julearn-0.3.5.dev28 → julearn-0.3.5.dev56}/.github/workflows/lint.yml

@@ -8,12 +8,11 @@ jobs:
   lint:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
-      - name: Install Python
-        uses: actions/setup-python@v4
+      - uses: actions/checkout@v5
+      - uses: actions/setup-python@v5
         with:
-          python-version: "3.11"
-      - name: Install dependencies
+          python-version: "3.x"
+      - name: Install Python dependencies
         run: |
           python -m pip install --upgrade pip
           python -m pip install tox "ruff>=0.1.0"

julearn-0.3.5.dev56/.github/workflows/publish.yml

@@ -0,0 +1,42 @@
+name: Build and publish
+
+on:
+  push:
+    branches:
+      - main
+    tags:
+      - 'v*'
+
+jobs:
+  build-and-publish:
+    name: Build and publish
+    runs-on: ubuntu-latest
+    permissions:
+      # Needed for PyPI publishing
+      id-token: write
+      # Needed for GitHub releases
+      contents: write
+    steps:
+    - uses: actions/checkout@v5
+      with:
+        fetch-depth: 0
+        submodules: true
+    - uses: actions/setup-python@v5
+      with:
+        python-version: "3.x"
+    - name: Install build
+      run: |
+        python -m pip install --upgrade pip
+        python -m pip install build
+    - name: Build package
+      run:
+        python -m build
+    - uses: pypa/gh-action-pypi-publish@release/v1
+    - uses: softprops/action-gh-release@v2
+      with:
+        files: |
+          dist/*.tar.gz
+          dist/*.whl
+        generate_release_notes: true
+        make_latest: true
+      if: startsWith(github.ref, 'refs/tags/')

{julearn-0.3.5.dev28 → julearn-0.3.5.dev56}/.pre-commit-config.yaml

@@ -4,7 +4,7 @@ ci:
 
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.6.0
+    rev: v6.0.0
     hooks:
       - id: check-ast
       - id: check-docstring-first
@@ -17,23 +17,22 @@ repos:
       - id: trailing-whitespace
         args: [--markdown-linebreak-ext=md]
   - repo: https://github.com/abravalheri/validate-pyproject
-    rev: v0.17
+    rev: v0.24.1
     hooks:
       - id: validate-pyproject
-  - repo: https://github.com/psf/black-pre-commit-mirror
-    rev: 24.4.2
-    hooks:
-      - id: black
-        exclude: ^(docs/|examples/)
-        args: [--check]
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.4.4
+    rev: v0.12.11
     hooks:
       - id: ruff
+        types_or: [python, jupyter]
         exclude: ^(__init__.py)
         args: [--output-format, grouped, --show-fixes]
+      - id: ruff-format
+        types_or: [python, jupyter]
+        exclude: ^(__init__.py)
+        args: [--check, --diff]
   - repo: https://github.com/codespell-project/codespell
-    rev: v2.2.6
+    rev: v2.4.1
     hooks:
       - id: codespell
         exclude: ^(.github/|docs/)

{julearn-0.3.5.dev28 → julearn-0.3.5.dev56}/PKG-INFO

@@ -1,13 +1,14 @@
 Metadata-Version: 2.4
 Name: julearn
-Version: 0.3.5.dev28
+Version: 0.3.5.dev56
 Summary: Juelich Machine Learning Library
 Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Sami Hamdan <s.hamdan@fz-juelich.de>
 Maintainer-email: Sami Hamdan <s.hamdan@fz-juelich.de>
 License: AGPL-3.0-only
-Project-URL: homepage, https://juaml.github.io/julearn
-Project-URL: documentation, https://juaml.github.io/julearn
-Project-URL: repository, https://github.com/juaml/julearn
+Project-URL: Changelog, https://juaml.github.io/julearn/main/whats_new.html
+Project-URL: Documentation, https://juaml.github.io/julearn
+Project-URL: Homepage, https://juaml.github.io/julearn
+Project-URL: Source, https://github.com/juaml/julearn
 Keywords: machine-learning
 Classifier: Development Status :: 5 - Production/Stable
 Classifier: Intended Audience :: Science/Research
@@ -17,34 +18,40 @@ Classifier: Natural Language :: English
 Classifier: Topic :: Software Development
 Classifier: Topic :: Scientific/Engineering
 Classifier: Operating System :: OS Independent
-Classifier: Programming Language :: Python :: 3.8
 Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
-Requires-Python: >=3.8
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Requires-Python: >=3.9
 Description-Content-Type: text/markdown
 License-File: LICENSE.md
 License-File: AUTHORS.rst
-Requires-Dist: numpy<1.27,>=1.24
-Requires-Dist: pandas<2.3,>=1.5.0
+Requires-Dist: numpy<2.0.0,>=1.26.0
+Requires-Dist: pandas<2.4.0,>=2.0.0
 Requires-Dist: statsmodels<0.15,>=0.13
-Requires-Dist: scikit-learn<1.6.0,>=1.2.0
+Requires-Dist: scikit-learn<1.8.0,>=1.2.0
+Requires-Dist: looseversion==1.3.0; python_version >= "3.12"
 Provides-Extra: dev
 Requires-Dist: tox; extra == "dev"
 Requires-Dist: pre-commit; extra == "dev"
+Requires-Dist: ruff; extra == "dev"
+Requires-Dist: towncrier; extra == "dev"
 Provides-Extra: docs
-Requires-Dist: seaborn<0.13,>=0.12.2; extra == "docs"
-Requires-Dist: sphinx<7.3,>=5.3.0; extra == "docs"
-Requires-Dist: sphinx-gallery<0.15,>=0.13.0; extra == "docs"
-Requires-Dist: furo<2024.0.0,>=2022.9.29; extra == "docs"
-Requires-Dist: sphinx_copybutton<0.6,>=0.5.0; extra == "docs"
-Requires-Dist: numpydoc<1.6,>=1.5.0; extra == "docs"
-Requires-Dist: towncrier<24; extra == "docs"
+Requires-Dist: seaborn<0.14.0,>=0.13.0; extra == "docs"
+Requires-Dist: sphinx<8.1.0,>=7.3.0; extra == "docs"
+Requires-Dist: sphinx-gallery<=0.19.0,>=0.17.0; extra == "docs"
+Requires-Dist: furo<=2025.7.19,>=2024.4.27; extra == "docs"
+Requires-Dist: numpydoc<=1.9.0,>=1.6.0; extra == "docs"
+Requires-Dist: sphinx-copybutton<0.5.3,>=0.5.1; extra == "docs"
+Requires-Dist: towncrier<24.7.0,>=23.10.0; extra == "docs"
+Requires-Dist: sphinxcontrib-towncrier==0.4.0a0; extra == "docs"
 Requires-Dist: scikit-optimize<0.11,>=0.10.0; extra == "docs"
 Requires-Dist: optuna<3.7,>=3.6.0; extra == "docs"
 Requires-Dist: optuna_integration<4.1,>=3.6.0; extra == "docs"
+Requires-Dist: setuptools-scm>=8; extra == "docs"
 Provides-Extra: deslib
-Requires-Dist: deslib<0.4,>=0.3.5; extra == "deslib"
+Requires-Dist: deslib<0.4.0,>=0.3.5; extra == "deslib"
 Provides-Extra: viz
 Requires-Dist: panel>=1.3.0; extra == "viz"
 Requires-Dist: bokeh>=3.0.0; extra == "viz"

{julearn-0.3.5.dev28 → julearn-0.3.5.dev56}/docs/Makefile

@@ -20,23 +20,14 @@ clean:
 	rm -rf api/generated/
 
 # For local build
-local: news
-	make _build_local; STATUS=$$?; make news_cleanup; exit $$STATUS
-
-news:
-	@echo "Generating whats_new.rst"
-	cd ../ && towncrier build --keep
-
-news_cleanup:
-	@echo "Cleaning up whats_new.rst"
-	git restore --staged whats_new.rst
-	git restore whats_new.rst
+local:
+	make _build_local; STATUS=$$?; exit $$STATUS
 
 _build_local:
 	sphinx-build "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
 
-html: news
-	make _html; STATUS=$$?; make news_cleanup; exit $$STATUS
+html:
+	make _html; STATUS=$$?; exit $$STATUS
 
 _html:
 	$(SPHINXBUILD) "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS)

{julearn-0.3.5.dev28 → julearn-0.3.5.dev56}/docs/api/index.rst

@@ -18,4 +18,4 @@ API Reference
    prepare.rst
    stats.rst
    viz.rst
-   config.rst
+   config.rst

{julearn-0.3.5.dev28 → julearn-0.3.5.dev56}/docs/changes/newsfragments/277.enh

@@ -1 +1 @@
-Avoid parallel calls in :class:`.FilterColumns` if not specified by the user in the :mod:`.config` module by `Fede Raimondo`_
+Avoid parallel calls in :class:`.FilterColumns` if not specified by the user in the :mod:`.config` module by `Fede Raimondo`_

{julearn-0.3.5.dev28 → julearn-0.3.5.dev56}/docs/changes/newsfragments/278.doc

@@ -1 +1 @@
-Include documentation on how to use the `joblib`_ and `joblib-htcondor`_ library to parallelize computation by `Fede Raimondo`_
+Include documentation on how to use the `joblib`_ and `joblib-htcondor`_ library to parallelize computation by `Fede Raimondo`_

julearn-0.3.5.dev56/docs/changes/newsfragments/284.misc

@@ -0,0 +1 @@
+Regular repository maintenance by updating ``.pre-commit-config.yaml``, replacing ``black`` with ``ruff-format``, updating tool configs and GitHub Actions workflows and dependency version constraints, dropping support for Python 3.8 and adding support for Python 3.12 and 3.13 by `Synchon Mandal`_

{julearn-0.3.5.dev28 → julearn-0.3.5.dev56}/docs/conf.py

@@ -1,22 +1,17 @@
+"""Provide configuration for Sphinx."""
+
 # Configuration file for the Sphinx documentation builder.
 #
 # This file only contains a selection of the most common options. For a full
 # list see the documentation:
 # https://www.sphinx-doc.org/en/master/usage/configuration.html
-import os
-import re
-import sys
 
-# -- Path setup --------------------------------------------------------------
-# If extensions (or modules to document with autodoc) are in another directory,
-# add these directories to sys.path here. If the directory is relative to the
-# documentation root, use os.path.abspath to make it absolute, like shown here.
-#
-# import os
-# import sys
-# sys.path.insert(0, os.path.abspath('.'))
+import datetime
+from functools import partial
 from pathlib import Path
 
+from setuptools_scm import get_version
+
 
 # Check if sphinx-multiversion is installed
 use_multiversion = False
@@ -27,40 +22,58 @@ try:
 except ImportError:
     pass
 
-curdir = Path(__file__).parent
-sys.path.append((curdir / "sphinxext").as_posix())
+
+# -- Path setup --------------------------------------------------------------
+
+PROJECT_ROOT_DIR = Path(__file__).parents[1].resolve()
+get_scm_version = partial(get_version, root=PROJECT_ROOT_DIR)
 
 # -- Project information -----------------------------------------------------
 
-project = "julearn"
-copyright = "2023, Authors of julearn"
-author = "Fede Raimondo"
+github_url = "https://github.com"
+github_repo_org = "juaml"
+github_repo_name = "julearn"
+github_repo_slug = f"{github_repo_org}/{github_repo_name}"
+github_repo_url = f"{github_url}/{github_repo_slug}"
 
+project = github_repo_name
+author = f"{project} Contributors"
+copyright = f"{datetime.date.today().year}, {author}"
 
-# -- General configuration ---------------------------------------------------
+# The version along with dev tag
+release = get_scm_version(
+    version_scheme="guess-next-dev",
+    local_scheme="no-local-version",
+)
 
+# -- General configuration ---------------------------------------------------
 
 # Add any Sphinx extension module names here, as strings. They can be
 # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
 # ones.
 extensions = [
-    "sphinx.ext.autodoc",
-    "sphinx.ext.autosummary",
-    "sphinx.ext.doctest",
-    "sphinx.ext.intersphinx",
-    "sphinx.ext.mathjax",
-    "sphinx_gallery.gen_gallery",
-    "numpydoc",
-    "gh_substitutions",
-    "sphinx_copybutton",
-    "bokeh.sphinxext.bokeh_plot",
+    # Built-in extensions:
+    "sphinx.ext.autodoc",  # include documentation from docstrings
+    "sphinx.ext.autosummary",  # generate autodoc summaries
+    "sphinx.ext.doctest",  # test snippets in the documentation
+    "sphinx.ext.extlinks",  # markup to shorten external links
+    "sphinx.ext.intersphinx",  # link to other projects` documentation
+    "sphinx.ext.mathjax",  # math support for HTML outputs in Sphinx
+    # Third-party extensions:
+    "sphinx_gallery.gen_gallery",  # HTML gallery of examples
+    "numpydoc",  # support for NumPy style docstrings
+    "sphinx_copybutton",  # copy button for code blocks
+    "sphinxcontrib.towncrier.ext",  # towncrier fragment support
+    "bokeh.sphinxext.bokeh_plot",  # bokeh plot support
 ]
 
 if use_multiversion:
     extensions.append("sphinx_multiversion")
 
 # Add any paths that contain templates here, relative to this directory.
-templates_path = ["_templates"]
+templates_path = [
+    "_templates",
+]
 
 # List of patterns, relative to source directory, that match files and
 # directories to ignore when looking for source files.
@@ -95,7 +108,7 @@ nitpick_ignore_regex = [
 # a list of builtin themes.
 #
 html_theme = "furo"
-
+html_title = "julearn documentation"
 html_logo = "images/julearn_logo_it.png"
 
 # These paths are either relative to html_static_path
@@ -127,7 +140,6 @@ html_sidebars = {
     ]
 }
 
-
 # -- sphinx.ext.autodoc configuration ----------------------------------------
 
 autoclass_content = "both"
@@ -168,6 +180,11 @@ intersphinx_mapping = {
     ),
 }
 
+# -- sphinx.ext.extlinks configuration ---------------------------------------
+
+extlinks = {
+    "gh": (f"{github_repo_url}/issues/%s", "#%s"),
+}
 
 # -- numpydoc configuration --------------------------------------------------
 
@@ -208,7 +225,6 @@ numpydoc_xref_ignore = {
 #     "EX01",
 # }
 
-
 # -- Sphinx-Gallery configuration --------------------------------------------
 
 ex_dirs = [
@@ -243,3 +259,9 @@ smv_rebuild_tags = False
 smv_tag_whitelist = r"^v\d+\.\d+.\d+$"
 smv_branch_whitelist = r"main"
 smv_released_pattern = r"^tags/v.*$"
+
+# -- sphinxcontrib-towncrier configuration -----------------------------------
+
+towncrier_draft_autoversion_mode = "draft"
+towncrier_draft_include_empty = True
+towncrier_draft_working_directory = PROJECT_ROOT_DIR

{julearn-0.3.5.dev28 → julearn-0.3.5.dev56}/docs/configuration.rst

@@ -53,4 +53,4 @@ Here you can find the comprehensive list of flags that can be set:
        | (instead of using ``n_jobs=1``)
        | If set to ``True``, the parameter will be set back to None.
      - | Column transformers will be applied in parallel, using more resources.
-       | than expected.
+       | than expected.

{julearn-0.3.5.dev28 → julearn-0.3.5.dev56}/docs/links.inc

@@ -44,4 +44,4 @@
 .. _`Optuna`: https://optuna.org
 .. _`optuna_integration`: https://github.com/optuna/optuna-integration
 .. _`Joblib`: https://joblib.readthedocs.io/en/stable/
-.. _`joblib-htcondor`: https://github.com/juaml/joblib-htcondor
+.. _`joblib-htcondor`: https://github.com/juaml/joblib-htcondor

{julearn-0.3.5.dev28 → julearn-0.3.5.dev56}/docs/whats_new.rst

@@ -6,6 +6,8 @@
 What's new
 ==========
 
+.. towncrier-draft-entries:: |release|
+
 .. towncrier release notes start
 
 Julearn 0.3.4 (2024-10-17)

{julearn-0.3.5.dev28 → julearn-0.3.5.dev56}/examples/99_docs/run_confound_removal_docs.py

@@ -46,6 +46,7 @@ relationship with the target that we can use as a confound.
 Let's import some of the functionality we will need:
 
 """
+
 from julearn import run_cross_validation
 from julearn.pipeline import PipelineCreator, TargetPipelineCreator
 from sklearn.datasets import make_regression

{julearn-0.3.5.dev28 → julearn-0.3.5.dev56}/examples/99_docs/run_cv_splitters_docs.py

@@ -89,6 +89,7 @@ samples per bin. Let's see an example using a uniform distribution, creating
 200 samples and 10 bins.
 
 """
+
 import numpy as np
 import matplotlib.pyplot as plt
 import seaborn as sns

{julearn-0.3.5.dev28 → julearn-0.3.5.dev56}/examples/99_docs/run_hyperparameters_docs.py

@@ -25,6 +25,7 @@ measurements of flowers.
 We start by loading the dataset and setting the features and target
 variables.
 """
+
 from seaborn import load_dataset
 from pprint import pprint  # To print in a pretty way
 
@@ -400,7 +401,7 @@ creator.add(
     "svm",
     C=(0.01, 10, "log-uniform"),
     gamma=(1e-3, 1e-1, "log-uniform"),
-    class_weight=("balanced", None, "categorical")
+    class_weight=("balanced", None, "categorical"),
 )
 print(creator)
 
@@ -476,6 +477,7 @@ print(creator)
 # For example, we can define a log-uniform distribution with base 2 for the
 # ``C`` hyperparameter of the :class:`~sklearn.svm.SVC` model:
 from skopt.space import Real
+
 creator = PipelineCreator(problem_type="classification")
 creator.add("zscore", with_mean=(True, False, "categorical"))
 creator.add(
@@ -497,6 +499,7 @@ print(creator)
 # transformer, while keeping a log-uniform distribution for the ``C`` and
 # ``gamma`` hyperparameters of the :class:`~sklearn.svm.SVC` model.
 from optuna.distributions import FloatDistribution
+
 creator = PipelineCreator(problem_type="classification")
 creator.add("zscore")
 creator.add(

{julearn-0.3.5.dev28 → julearn-0.3.5.dev56}/examples/99_docs/run_model_evaluation_docs.py

@@ -19,6 +19,7 @@ Cross-validation scores
 We consider the ``iris`` data example and one of the pipelines from the previous
 section (feature z-scoring and a ``svm``).
 """
+
 from julearn import run_cross_validation
 from julearn.pipeline import PipelineCreator