julearn 0.3.4.dev43__tar.gz → 0.3.5.dev5__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (238) hide show
  1. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/PKG-INFO +1 -1
  2. julearn-0.3.5.dev5/docs/api/config.rst +21 -0
  3. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/api/index.rst +1 -0
  4. julearn-0.3.5.dev5/docs/changes/newsfragments/277.enh +1 -0
  5. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/_version.py +2 -2
  6. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/dataframe/filter_columns.py +7 -1
  7. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn.egg-info/PKG-INFO +1 -1
  8. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn.egg-info/SOURCES.txt +2 -0
  9. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/.github/ISSUE_TEMPLATE/bug_report.yaml +0 -0
  10. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/.github/ISSUE_TEMPLATE/config.yml +0 -0
  11. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/.github/ISSUE_TEMPLATE/documentation_request.yaml +0 -0
  12. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/.github/ISSUE_TEMPLATE/feature_request.yaml +0 -0
  13. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/.github/workflows/check-stale.yml +0 -0
  14. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/.github/workflows/ci-docs.yml +0 -0
  15. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/.github/workflows/ci.yml +0 -0
  16. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/.github/workflows/docs-preview.yml +0 -0
  17. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/.github/workflows/docs.yml +0 -0
  18. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/.github/workflows/lint.yml +0 -0
  19. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/.github/workflows/pypi.yml +0 -0
  20. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/.gitignore +0 -0
  21. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/.pre-commit-config.yaml +0 -0
  22. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/AUTHORS.rst +0 -0
  23. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/LICENSE.md +0 -0
  24. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/README.md +0 -0
  25. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/codecov.yml +0 -0
  26. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/Makefile +0 -0
  27. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/_static/css/custom.css +0 -0
  28. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/_static/js/custom.js +0 -0
  29. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/_templates/class.rst +0 -0
  30. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/_templates/function.rst +0 -0
  31. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/_templates/function_warning.rst +0 -0
  32. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/_templates/versions.html +0 -0
  33. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/api/base.rst +0 -0
  34. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/api/inspect.rst +0 -0
  35. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/api/main.rst +0 -0
  36. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/api/model_selection.rst +0 -0
  37. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/api/models.rst +0 -0
  38. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/api/pipeline.rst +0 -0
  39. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/api/prepare.rst +0 -0
  40. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/api/scoring.rst +0 -0
  41. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/api/stats.rst +0 -0
  42. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/api/transformers.rst +0 -0
  43. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/api/utils.rst +0 -0
  44. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/api/viz.rst +0 -0
  45. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/available_pipeline_steps.rst +0 -0
  46. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/changes/contributors.inc +0 -0
  47. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/changes/newsfragments/.gitignore +0 -0
  48. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/conf.py +0 -0
  49. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/configuration.rst +0 -0
  50. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/contributing.rst +0 -0
  51. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/examples.rst +0 -0
  52. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/faq.rst +0 -0
  53. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/getting_started.rst +0 -0
  54. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/images/corrected_ttest.png +0 -0
  55. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/images/final_estimator.png +0 -0
  56. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/images/iris_X.png +0 -0
  57. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/images/iris_df.png +0 -0
  58. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/images/iris_y.png +0 -0
  59. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/images/julearn_logo.png +0 -0
  60. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/images/julearn_logo_calm.png +0 -0
  61. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/images/julearn_logo_confbias.png +0 -0
  62. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/images/julearn_logo_cv.png +0 -0
  63. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/images/julearn_logo_generalization.png +0 -0
  64. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/images/julearn_logo_it.png +0 -0
  65. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/images/julearn_logo_ml.png +0 -0
  66. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/images/julearn_logo_mlit.png +0 -0
  67. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/images/multiple_scorers_run_cv.png +0 -0
  68. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/images/plot_scores.png +0 -0
  69. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/images/scores_run_cv.png +0 -0
  70. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/images/scores_run_cv_splitter.png +0 -0
  71. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/images/scores_run_cv_train.png +0 -0
  72. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/index.rst +0 -0
  73. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/links.inc +0 -0
  74. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/maintaining.rst +0 -0
  75. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/redirect.html +0 -0
  76. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/selected_deeper_topics/CBPM.rst +0 -0
  77. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/selected_deeper_topics/confound_removal.rst +0 -0
  78. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/selected_deeper_topics/cross_validation_splitter.rst +0 -0
  79. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/selected_deeper_topics/hyperparameter_tuning.rst +0 -0
  80. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/selected_deeper_topics/index.rst +0 -0
  81. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/selected_deeper_topics/model_inspect.rst +0 -0
  82. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/selected_deeper_topics/stacked_models.rst +0 -0
  83. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/selected_deeper_topics/target_transformers.rst +0 -0
  84. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/sphinxext/gh_substitutions.py +0 -0
  85. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/what_really_need_know/cross_validation.rst +0 -0
  86. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/what_really_need_know/data.rst +0 -0
  87. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/what_really_need_know/index.rst +0 -0
  88. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/what_really_need_know/model_comparison.rst +0 -0
  89. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/what_really_need_know/model_evaluation.rst +0 -0
  90. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/what_really_need_know/pipeline.rst +0 -0
  91. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/docs/whats_new.rst +0 -0
  92. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/00_starting/README.rst +0 -0
  93. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/00_starting/plot_cm_acc_multiclass.py +0 -0
  94. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/00_starting/plot_example_regression.py +0 -0
  95. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/00_starting/plot_stratified_kfold_reg.py +0 -0
  96. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/00_starting/run_combine_pandas.py +0 -0
  97. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/00_starting/run_grouped_cv.py +0 -0
  98. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/00_starting/run_simple_binary_classification.py +0 -0
  99. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/01_model_comparison/README.rst +0 -0
  100. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/01_model_comparison/plot_simple_model_comparison.py +0 -0
  101. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/02_inspection/README.rst +0 -0
  102. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/02_inspection/plot_groupcv_inspect_svm.py +0 -0
  103. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/02_inspection/plot_inspect_random_forest.py +0 -0
  104. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/02_inspection/plot_preprocess.py +0 -0
  105. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/02_inspection/run_binary_inspect_folds.py +0 -0
  106. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/03_complex_models/README.rst +0 -0
  107. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/03_complex_models/run_apply_to_target.py +0 -0
  108. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/03_complex_models/run_example_pca_featsets.py +0 -0
  109. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/03_complex_models/run_hyperparameter_multiple_grids.py +0 -0
  110. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/03_complex_models/run_hyperparameter_tuning.py +0 -0
  111. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/03_complex_models/run_hyperparameter_tuning_bayessearch.py +0 -0
  112. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/03_complex_models/run_stacked_models.py +0 -0
  113. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/04_confounds/README.rst +0 -0
  114. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/04_confounds/plot_confound_removal_classification.py +0 -0
  115. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/04_confounds/run_return_confounds.py +0 -0
  116. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/05_customization/README.rst +0 -0
  117. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/05_customization/run_custom_scorers_regression.py +0 -0
  118. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/99_docs/README.rst +0 -0
  119. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/99_docs/run_cbpm_docs.py +0 -0
  120. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/99_docs/run_confound_removal_docs.py +0 -0
  121. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/99_docs/run_cv_splitters_docs.py +0 -0
  122. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/99_docs/run_data_docs.py +0 -0
  123. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/99_docs/run_hyperparameters_docs.py +0 -0
  124. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/99_docs/run_model_comparison_docs.py +0 -0
  125. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/99_docs/run_model_evaluation_docs.py +0 -0
  126. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/99_docs/run_model_inspection_docs.py +0 -0
  127. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/99_docs/run_pipeline_docs.py +0 -0
  128. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/99_docs/run_stacked_models_docs.py +0 -0
  129. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/99_docs/run_target_transformer_docs.py +0 -0
  130. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/README.rst +0 -0
  131. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/XX_disabled/dis_run_n_jobs.py +0 -0
  132. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/examples/XX_disabled/dis_run_target_confound_removal.py +0 -0
  133. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/ignore_words.txt +0 -0
  134. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/__init__.py +0 -0
  135. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/api.py +0 -0
  136. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/base/__init__.py +0 -0
  137. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/base/column_types.py +0 -0
  138. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/base/estimators.py +0 -0
  139. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/base/tests/test_base_estimators.py +0 -0
  140. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/base/tests/test_column_types.py +0 -0
  141. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/config.py +0 -0
  142. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/conftest.py +0 -0
  143. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/external/optuna_searchcv.py +0 -0
  144. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/inspect/__init__.py +0 -0
  145. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/inspect/_cv.py +0 -0
  146. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/inspect/_pipeline.py +0 -0
  147. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/inspect/_preprocess.py +0 -0
  148. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/inspect/inspector.py +0 -0
  149. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/inspect/tests/test_cv.py +0 -0
  150. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/inspect/tests/test_inspector.py +0 -0
  151. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/inspect/tests/test_pipeline.py +0 -0
  152. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/inspect/tests/test_preprocess.py +0 -0
  153. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/model_selection/__init__.py +0 -0
  154. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/model_selection/_optuna_searcher.py +0 -0
  155. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/model_selection/_skopt_searcher.py +0 -0
  156. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/model_selection/available_searchers.py +0 -0
  157. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/model_selection/continuous_stratified_kfold.py +0 -0
  158. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/model_selection/final_model_cv.py +0 -0
  159. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/model_selection/stratified_bootstrap.py +0 -0
  160. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/model_selection/tests/test_available_searchers.py +0 -0
  161. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/model_selection/tests/test_continous_stratified_kfold.py +0 -0
  162. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/model_selection/tests/test_final_model_cv.py +0 -0
  163. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/model_selection/tests/test_optuna_searcher.py +0 -0
  164. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/model_selection/tests/test_skopt_searcher.py +0 -0
  165. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/model_selection/tests/test_stratified_bootstrap.py +0 -0
  166. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/model_selection/utils.py +0 -0
  167. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/models/__init__.py +0 -0
  168. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/models/available_models.py +0 -0
  169. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/models/dynamic.py +0 -0
  170. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/models/tests/test_available_models.py +0 -0
  171. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/models/tests/test_dynamic.py +0 -0
  172. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/models/tests/test_models.py +0 -0
  173. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/pipeline/__init__.py +0 -0
  174. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/pipeline/merger.py +0 -0
  175. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/pipeline/pipeline_creator.py +0 -0
  176. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/pipeline/target_pipeline.py +0 -0
  177. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/pipeline/target_pipeline_creator.py +0 -0
  178. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/pipeline/tests/test_merger.py +0 -0
  179. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/pipeline/tests/test_pipeline_creator.py +0 -0
  180. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/pipeline/tests/test_target_pipeline.py +0 -0
  181. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/pipeline/tests/test_target_pipeline_creator.py +0 -0
  182. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/prepare.py +0 -0
  183. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/scoring/__init__.py +0 -0
  184. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/scoring/available_scorers.py +0 -0
  185. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/scoring/metrics.py +0 -0
  186. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/scoring/tests/test_available_scorers.py +0 -0
  187. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/scoring/tests/test_metrics.py +0 -0
  188. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/stats/__init__.py +0 -0
  189. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/stats/corrected_ttest.py +0 -0
  190. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/stats/tests/test_corrected_ttest.py +0 -0
  191. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/tests/test_api.py +0 -0
  192. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/tests/test_config.py +0 -0
  193. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/tests/test_prepare.py +0 -0
  194. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/__init__.py +0 -0
  195. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/available_transformers.py +0 -0
  196. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/cbpm.py +0 -0
  197. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/confound_remover.py +0 -0
  198. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/dataframe/__init__.py +0 -0
  199. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/dataframe/change_column_types.py +0 -0
  200. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/dataframe/drop_columns.py +0 -0
  201. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/dataframe/set_column_types.py +0 -0
  202. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/dataframe/tests/test_change_column_types.py +0 -0
  203. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/dataframe/tests/test_drop_columns.py +0 -0
  204. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/dataframe/tests/test_filter_columns.py +0 -0
  205. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/dataframe/tests/test_set_column_types.py +0 -0
  206. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/ju_column_transformer.py +0 -0
  207. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/target/__init__.py +0 -0
  208. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/target/available_target_transformers.py +0 -0
  209. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/target/ju_target_transformer.py +0 -0
  210. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/target/ju_transformed_target_model.py +0 -0
  211. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/target/target_confound_remover.py +0 -0
  212. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/target/tests/test_available_target_transformers.py +0 -0
  213. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/target/tests/test_ju_target_transformer.py +0 -0
  214. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/target/tests/test_ju_transformed_target_model.py +0 -0
  215. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/target/tests/test_target_confound_remover.py +0 -0
  216. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/tests/test_available_transformers.py +0 -0
  217. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/tests/test_cbpm.py +0 -0
  218. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/tests/test_confounds.py +0 -0
  219. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/transformers/tests/test_jucolumntransformers.py +0 -0
  220. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/utils/__init__.py +0 -0
  221. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/utils/_cv.py +0 -0
  222. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/utils/checks.py +0 -0
  223. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/utils/logging.py +0 -0
  224. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/utils/testing.py +0 -0
  225. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/utils/tests/test_logging.py +0 -0
  226. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/utils/tests/test_version.py +0 -0
  227. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/utils/typing.py +0 -0
  228. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/utils/versions.py +0 -0
  229. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/viz/__init__.py +0 -0
  230. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn/viz/_scores.py +0 -0
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  232. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn.egg-info/dependency_links.txt +0 -0
  233. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn.egg-info/requires.txt +0 -0
  234. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/julearn.egg-info/top_level.txt +0 -0
  235. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/pyproject.toml +0 -0
  236. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/setup.cfg +0 -0
  237. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/setup.py +0 -0
  238. {julearn-0.3.4.dev43 → julearn-0.3.5.dev5}/tox.ini +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: julearn
3
- Version: 0.3.4.dev43
3
+ Version: 0.3.5.dev5
4
4
  Summary: Juelich Machine Learning Library
5
5
  Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Sami Hamdan <s.hamdan@fz-juelich.de>
6
6
  Maintainer-email: Sami Hamdan <s.hamdan@fz-juelich.de>
@@ -0,0 +1,21 @@
1
+ Config
2
+ ======
3
+
4
+ .. automodule:: julearn.config
5
+ :no-members:
6
+ :no-inherited-members:
7
+
8
+
9
+ See :ref:`configuration` for more information on the flags that can be set.
10
+
11
+ Functions
12
+ ---------
13
+
14
+ .. currentmodule:: julearn.config
15
+
16
+ .. autosummary::
17
+ :toctree: generated/
18
+ :template: function.rst
19
+
20
+ set_config
21
+ get_config
@@ -18,3 +18,4 @@ API Reference
18
18
  prepare.rst
19
19
  stats.rst
20
20
  viz.rst
21
+ config.rst
@@ -0,0 +1 @@
1
+ Avoid parallel calls in :class:`.FilterColumns` if not specified by the user in the :mod:`.config` module by `Fede Raimondo`_
@@ -12,5 +12,5 @@ __version__: str
12
12
  __version_tuple__: VERSION_TUPLE
13
13
  version_tuple: VERSION_TUPLE
14
14
 
15
- __version__ = version = '0.3.4.dev43'
16
- __version_tuple__ = version_tuple = (0, 3, 4, 'dev43')
15
+ __version__ = version = '0.3.5.dev5'
16
+ __version_tuple__ = version_tuple = (0, 3, 5, 'dev5')
@@ -15,6 +15,7 @@ from ...base import (
15
15
  JuTransformer,
16
16
  ensure_column_types,
17
17
  )
18
+ from ...config import get_config
18
19
  from ...utils.typing import DataLike
19
20
 
20
21
 
@@ -53,7 +54,9 @@ class FilterColumns(JuTransformer):
53
54
  )
54
55
 
55
56
  def _fit(
56
- self, X: pd.DataFrame, y: Optional[DataLike] = None # noqa: N803
57
+ self,
58
+ X: pd.DataFrame, # noqa: N803
59
+ y: Optional[DataLike] = None,
57
60
  ) -> "FilterColumns":
58
61
  """Fit the transformer.
59
62
 
@@ -75,6 +78,9 @@ class FilterColumns(JuTransformer):
75
78
  transformers=[("keep", "passthrough", apply_to_selector)],
76
79
  remainder="drop",
77
80
  verbose_feature_names_out=False,
81
+ n_jobs=None
82
+ if get_config("enable_parallel_column_transformers")
83
+ else 1,
78
84
  )
79
85
  self.filter_columns_.fit(X, y)
80
86
  return self
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: julearn
3
- Version: 0.3.4.dev43
3
+ Version: 0.3.5.dev5
4
4
  Summary: Juelich Machine Learning Library
5
5
  Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Sami Hamdan <s.hamdan@fz-juelich.de>
6
6
  Maintainer-email: Sami Hamdan <s.hamdan@fz-juelich.de>
@@ -39,6 +39,7 @@ docs/_templates/function.rst
39
39
  docs/_templates/function_warning.rst
40
40
  docs/_templates/versions.html
41
41
  docs/api/base.rst
42
+ docs/api/config.rst
42
43
  docs/api/index.rst
43
44
  docs/api/inspect.rst
44
45
  docs/api/main.rst
@@ -53,6 +54,7 @@ docs/api/utils.rst
53
54
  docs/api/viz.rst
54
55
  docs/changes/contributors.inc
55
56
  docs/changes/newsfragments/.gitignore
57
+ docs/changes/newsfragments/277.enh
56
58
  docs/images/corrected_ttest.png
57
59
  docs/images/final_estimator.png
58
60
  docs/images/iris_X.png
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