julearn 0.3.2.dev80__tar.gz → 0.3.3.dev4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (232) hide show
  1. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/PKG-INFO +8 -1
  2. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/README.md +7 -0
  3. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/getting_started.rst +13 -6
  4. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/links.inc +2 -1
  5. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/_version.py +2 -2
  6. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn.egg-info/PKG-INFO +8 -1
  7. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/pyproject.toml +2 -4
  8. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/.github/ISSUE_TEMPLATE/bug_report.yaml +0 -0
  9. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/.github/ISSUE_TEMPLATE/config.yml +0 -0
  10. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/.github/ISSUE_TEMPLATE/documentation_request.yaml +0 -0
  11. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/.github/ISSUE_TEMPLATE/feature_request.yaml +0 -0
  12. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/.github/workflows/check-stale.yml +0 -0
  13. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/.github/workflows/ci-docs.yml +0 -0
  14. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/.github/workflows/ci.yml +0 -0
  15. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/.github/workflows/docs-preview.yml +0 -0
  16. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/.github/workflows/docs.yml +0 -0
  17. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/.github/workflows/lint.yml +0 -0
  18. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/.github/workflows/pypi.yml +0 -0
  19. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/.gitignore +0 -0
  20. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/.pre-commit-config.yaml +0 -0
  21. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/AUTHORS.rst +0 -0
  22. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/LICENSE.md +0 -0
  23. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/codecov.yml +0 -0
  24. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/Makefile +0 -0
  25. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/_static/css/custom.css +0 -0
  26. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/_static/js/custom.js +0 -0
  27. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/_templates/class.rst +0 -0
  28. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/_templates/function.rst +0 -0
  29. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/_templates/function_warning.rst +0 -0
  30. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/_templates/versions.html +0 -0
  31. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/api/base.rst +0 -0
  32. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/api/index.rst +0 -0
  33. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/api/inspect.rst +0 -0
  34. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/api/main.rst +0 -0
  35. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/api/model_selection.rst +0 -0
  36. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/api/models.rst +0 -0
  37. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/api/pipeline.rst +0 -0
  38. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/api/prepare.rst +0 -0
  39. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/api/scoring.rst +0 -0
  40. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/api/stats.rst +0 -0
  41. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/api/transformers.rst +0 -0
  42. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/api/utils.rst +0 -0
  43. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/api/viz.rst +0 -0
  44. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/available_pipeline_steps.rst +0 -0
  45. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/changes/contributors.inc +0 -0
  46. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/changes/newsfragments/.gitignore +0 -0
  47. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/conf.py +0 -0
  48. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/configuration.rst +0 -0
  49. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/contributing.rst +0 -0
  50. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/examples.rst +0 -0
  51. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/faq.rst +0 -0
  52. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/images/corrected_ttest.png +0 -0
  53. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/images/final_estimator.png +0 -0
  54. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/images/iris_X.png +0 -0
  55. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/images/iris_df.png +0 -0
  56. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/images/iris_y.png +0 -0
  57. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/images/julearn_logo.png +0 -0
  58. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/images/julearn_logo_calm.png +0 -0
  59. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/images/julearn_logo_confbias.png +0 -0
  60. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/images/julearn_logo_cv.png +0 -0
  61. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/images/julearn_logo_generalization.png +0 -0
  62. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/images/julearn_logo_it.png +0 -0
  63. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/images/julearn_logo_ml.png +0 -0
  64. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/images/julearn_logo_mlit.png +0 -0
  65. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/images/multiple_scorers_run_cv.png +0 -0
  66. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/images/plot_scores.png +0 -0
  67. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/images/scores_run_cv.png +0 -0
  68. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/images/scores_run_cv_splitter.png +0 -0
  69. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/images/scores_run_cv_train.png +0 -0
  70. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/index.rst +0 -0
  71. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/maintaining.rst +0 -0
  72. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/redirect.html +0 -0
  73. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/selected_deeper_topics/CBPM.rst +0 -0
  74. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/selected_deeper_topics/confound_removal.rst +0 -0
  75. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/selected_deeper_topics/cross_validation_splitter.rst +0 -0
  76. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/selected_deeper_topics/hyperparameter_tuning.rst +0 -0
  77. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/selected_deeper_topics/index.rst +0 -0
  78. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/selected_deeper_topics/model_inspect.rst +0 -0
  79. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/selected_deeper_topics/stacked_models.rst +0 -0
  80. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/selected_deeper_topics/target_transformers.rst +0 -0
  81. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/sphinxext/gh_substitutions.py +0 -0
  82. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/what_really_need_know/cross_validation.rst +0 -0
  83. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/what_really_need_know/data.rst +0 -0
  84. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/what_really_need_know/index.rst +0 -0
  85. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/what_really_need_know/model_comparison.rst +0 -0
  86. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/what_really_need_know/model_evaluation.rst +0 -0
  87. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/what_really_need_know/pipeline.rst +0 -0
  88. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/docs/whats_new.rst +0 -0
  89. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/00_starting/README.rst +0 -0
  90. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/00_starting/plot_cm_acc_multiclass.py +0 -0
  91. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/00_starting/plot_example_regression.py +0 -0
  92. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/00_starting/plot_stratified_kfold_reg.py +0 -0
  93. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/00_starting/run_combine_pandas.py +0 -0
  94. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/00_starting/run_grouped_cv.py +0 -0
  95. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/00_starting/run_simple_binary_classification.py +0 -0
  96. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/01_model_comparison/README.rst +0 -0
  97. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/01_model_comparison/plot_simple_model_comparison.py +0 -0
  98. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/02_inspection/README.rst +0 -0
  99. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/02_inspection/plot_groupcv_inspect_svm.py +0 -0
  100. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/02_inspection/plot_inspect_random_forest.py +0 -0
  101. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/02_inspection/plot_preprocess.py +0 -0
  102. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/02_inspection/run_binary_inspect_folds.py +0 -0
  103. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/03_complex_models/README.rst +0 -0
  104. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/03_complex_models/run_apply_to_target.py +0 -0
  105. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/03_complex_models/run_example_pca_featsets.py +0 -0
  106. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/03_complex_models/run_hyperparameter_multiple_grids.py +0 -0
  107. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/03_complex_models/run_hyperparameter_tuning.py +0 -0
  108. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/03_complex_models/run_hyperparameter_tuning_bayessearch.py +0 -0
  109. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/03_complex_models/run_stacked_models.py +0 -0
  110. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/04_confounds/README.rst +0 -0
  111. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/04_confounds/plot_confound_removal_classification.py +0 -0
  112. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/04_confounds/run_return_confounds.py +0 -0
  113. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/05_customization/README.rst +0 -0
  114. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/05_customization/run_custom_scorers_regression.py +0 -0
  115. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/99_docs/README.rst +0 -0
  116. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/99_docs/run_cbpm_docs.py +0 -0
  117. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/99_docs/run_confound_removal_docs.py +0 -0
  118. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/99_docs/run_cv_splitters_docs.py +0 -0
  119. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/99_docs/run_data_docs.py +0 -0
  120. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/99_docs/run_hyperparameters_docs.py +0 -0
  121. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/99_docs/run_model_comparison_docs.py +0 -0
  122. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/99_docs/run_model_evaluation_docs.py +0 -0
  123. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/99_docs/run_model_inspection_docs.py +0 -0
  124. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/99_docs/run_pipeline_docs.py +0 -0
  125. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/99_docs/run_stacked_models_docs.py +0 -0
  126. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/99_docs/run_target_transformer_docs.py +0 -0
  127. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/README.rst +0 -0
  128. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/XX_disabled/dis_run_n_jobs.py +0 -0
  129. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/examples/XX_disabled/dis_run_target_confound_removal.py +0 -0
  130. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/ignore_words.txt +0 -0
  131. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/__init__.py +0 -0
  132. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/api.py +0 -0
  133. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/base/__init__.py +0 -0
  134. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/base/column_types.py +0 -0
  135. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/base/estimators.py +0 -0
  136. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/base/tests/test_base_estimators.py +0 -0
  137. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/base/tests/test_column_types.py +0 -0
  138. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/config.py +0 -0
  139. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/conftest.py +0 -0
  140. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/inspect/__init__.py +0 -0
  141. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/inspect/_cv.py +0 -0
  142. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/inspect/_pipeline.py +0 -0
  143. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/inspect/_preprocess.py +0 -0
  144. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/inspect/inspector.py +0 -0
  145. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/inspect/tests/test_cv.py +0 -0
  146. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/inspect/tests/test_inspector.py +0 -0
  147. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/inspect/tests/test_pipeline.py +0 -0
  148. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/inspect/tests/test_preprocess.py +0 -0
  149. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/model_selection/__init__.py +0 -0
  150. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/model_selection/_optuna_searcher.py +0 -0
  151. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/model_selection/_skopt_searcher.py +0 -0
  152. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/model_selection/available_searchers.py +0 -0
  153. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/model_selection/continuous_stratified_kfold.py +0 -0
  154. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/model_selection/stratified_bootstrap.py +0 -0
  155. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/model_selection/tests/test_available_searchers.py +0 -0
  156. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/model_selection/tests/test_continous_stratified_kfold.py +0 -0
  157. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/model_selection/tests/test_optuna_searcher.py +0 -0
  158. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/model_selection/tests/test_skopt_searcher.py +0 -0
  159. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/model_selection/tests/test_stratified_bootstrap.py +0 -0
  160. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/models/__init__.py +0 -0
  161. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/models/available_models.py +0 -0
  162. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/models/dynamic.py +0 -0
  163. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/models/tests/test_available_models.py +0 -0
  164. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/models/tests/test_dynamic.py +0 -0
  165. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/models/tests/test_models.py +0 -0
  166. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/pipeline/__init__.py +0 -0
  167. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/pipeline/merger.py +0 -0
  168. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/pipeline/pipeline_creator.py +0 -0
  169. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/pipeline/target_pipeline.py +0 -0
  170. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/pipeline/target_pipeline_creator.py +0 -0
  171. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/pipeline/tests/test_merger.py +0 -0
  172. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/pipeline/tests/test_pipeline_creator.py +0 -0
  173. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/pipeline/tests/test_target_pipeline.py +0 -0
  174. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/pipeline/tests/test_target_pipeline_creator.py +0 -0
  175. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/prepare.py +0 -0
  176. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/scoring/__init__.py +0 -0
  177. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/scoring/available_scorers.py +0 -0
  178. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/scoring/metrics.py +0 -0
  179. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/scoring/tests/test_available_scorers.py +0 -0
  180. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/scoring/tests/test_metrics.py +0 -0
  181. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/stats/__init__.py +0 -0
  182. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/stats/corrected_ttest.py +0 -0
  183. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/stats/tests/test_corrected_ttest.py +0 -0
  184. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/tests/test_api.py +0 -0
  185. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/tests/test_config.py +0 -0
  186. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/tests/test_prepare.py +0 -0
  187. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/__init__.py +0 -0
  188. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/available_transformers.py +0 -0
  189. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/cbpm.py +0 -0
  190. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/confound_remover.py +0 -0
  191. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/dataframe/__init__.py +0 -0
  192. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/dataframe/change_column_types.py +0 -0
  193. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/dataframe/drop_columns.py +0 -0
  194. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/dataframe/filter_columns.py +0 -0
  195. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/dataframe/set_column_types.py +0 -0
  196. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/dataframe/tests/test_change_column_types.py +0 -0
  197. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/dataframe/tests/test_drop_columns.py +0 -0
  198. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/dataframe/tests/test_filter_columns.py +0 -0
  199. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/dataframe/tests/test_set_column_types.py +0 -0
  200. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/ju_column_transformer.py +0 -0
  201. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/target/__init__.py +0 -0
  202. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/target/available_target_transformers.py +0 -0
  203. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/target/ju_target_transformer.py +0 -0
  204. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/target/ju_transformed_target_model.py +0 -0
  205. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/target/target_confound_remover.py +0 -0
  206. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/target/tests/test_available_target_transformers.py +0 -0
  207. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/target/tests/test_ju_target_transformer.py +0 -0
  208. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/target/tests/test_ju_transformed_target_model.py +0 -0
  209. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/target/tests/test_target_confound_remover.py +0 -0
  210. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/tests/test_available_transformers.py +0 -0
  211. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/tests/test_cbpm.py +0 -0
  212. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/tests/test_confounds.py +0 -0
  213. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/transformers/tests/test_jucolumntransformers.py +0 -0
  214. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/utils/__init__.py +0 -0
  215. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/utils/_cv.py +0 -0
  216. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/utils/checks.py +0 -0
  217. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/utils/logging.py +0 -0
  218. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/utils/testing.py +0 -0
  219. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/utils/tests/test_logging.py +0 -0
  220. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/utils/tests/test_version.py +0 -0
  221. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/utils/typing.py +0 -0
  222. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/utils/versions.py +0 -0
  223. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/viz/__init__.py +0 -0
  224. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/viz/_scores.py +0 -0
  225. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn/viz/res/julearn_logo_generalization.png +0 -0
  226. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn.egg-info/SOURCES.txt +0 -0
  227. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn.egg-info/dependency_links.txt +0 -0
  228. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn.egg-info/requires.txt +0 -0
  229. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/julearn.egg-info/top_level.txt +0 -0
  230. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/setup.cfg +0 -0
  231. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/setup.py +0 -0
  232. {julearn-0.3.2.dev80 → julearn-0.3.3.dev4}/tox.ini +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: julearn
3
- Version: 0.3.2.dev80
3
+ Version: 0.3.3.dev4
4
4
  Summary: Juelich Machine Learning Library
5
5
  Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Sami Hamdan <s.hamdan@fz-juelich.de>
6
6
  Maintainer-email: Sami Hamdan <s.hamdan@fz-juelich.de>
@@ -62,6 +62,7 @@ Requires-Dist: julearn[optuna,skopt,viz]; extra == "all"
62
62
  ![PyPI](https://img.shields.io/pypi/v/julearn?style=flat-square)
63
63
  ![PyPI - Python Version](https://img.shields.io/pypi/pyversions/julearn?style=flat-square)
64
64
  ![PyPI - Wheel](https://img.shields.io/pypi/wheel/julearn?style=flat-square)
65
+ [![Anaconda-Server Badge](https://anaconda.org/conda-forge/julearn/badges/version.svg)](https://anaconda.org/conda-forge/julearn)
65
66
  ![GitHub](https://img.shields.io/github/license/juaml/julearn?style=flat-square)
66
67
  ![Codecov](https://img.shields.io/codecov/c/github/juaml/julearn?style=flat-square)
67
68
  [![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/charliermarsh/ruff/main/assets/badge/v2.json)](https://github.com/charliermarsh/ruff)
@@ -83,6 +84,12 @@ Use `pip` to install from PyPI like so:
83
84
  pip install julearn
84
85
  ```
85
86
 
87
+ You can also install via `conda`, like so:
88
+
89
+ ```
90
+ conda install -c conda-forge julearn
91
+ ```
92
+
86
93
  ## Licensing
87
94
 
88
95
  julearn is released under the AGPL v3 license:
@@ -3,6 +3,7 @@
3
3
  ![PyPI](https://img.shields.io/pypi/v/julearn?style=flat-square)
4
4
  ![PyPI - Python Version](https://img.shields.io/pypi/pyversions/julearn?style=flat-square)
5
5
  ![PyPI - Wheel](https://img.shields.io/pypi/wheel/julearn?style=flat-square)
6
+ [![Anaconda-Server Badge](https://anaconda.org/conda-forge/julearn/badges/version.svg)](https://anaconda.org/conda-forge/julearn)
6
7
  ![GitHub](https://img.shields.io/github/license/juaml/julearn?style=flat-square)
7
8
  ![Codecov](https://img.shields.io/codecov/c/github/juaml/julearn?style=flat-square)
8
9
  [![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/charliermarsh/ruff/main/assets/badge/v2.json)](https://github.com/charliermarsh/ruff)
@@ -24,6 +25,12 @@ Use `pip` to install from PyPI like so:
24
25
  pip install julearn
25
26
  ```
26
27
 
28
+ You can also install via `conda`, like so:
29
+
30
+ ```
31
+ conda install -c conda-forge julearn
32
+ ```
33
+
27
34
  ## Licensing
28
35
 
29
36
  julearn is released under the AGPL v3 license:
@@ -12,17 +12,17 @@ packages:
12
12
 
13
13
  * ``numpy>=1.24,<1.27``
14
14
  * ``pandas>=1.5.0,<2.2``
15
- * ``scikit-learn>=1.2,<1.4``
15
+ * ``scikit-learn>=1.2.0,<1.5.0``
16
16
  * ``statsmodels>=0.13,<0.15``
17
17
 
18
18
  Running the examples require:
19
19
 
20
20
  * ``seaborn>=0.12.2,<0.13``
21
21
  * ``bokeh>=3.0.0``
22
- * ``panel>=1.0.0b1``
23
- * ``param>=1.11.0``
22
+ * ``panel>=1.3.0``
23
+ * ``param>=2.0.0``
24
24
 
25
- Depending on the installation method (e.g. the `pip install` option below),
25
+ Depending on the installation method (e.g. the ``pip install`` option below),
26
26
  these packages might be installed automatically. It is nevertheless good to be
27
27
  aware of these dependencies as installing ``julearn`` might lead to changes in
28
28
  these packages.
@@ -47,17 +47,23 @@ Installing
47
47
  developer version until we release the next stable ``julearn`` version.
48
48
 
49
49
 
50
- Depending on your aimed usage of ``julearn`` you have two different options
50
+ Depending on your aimed usage of ``julearn`` you have different options
51
51
  how to install ``julearn``:
52
52
 
53
53
  #. Install the *latest release*: Likely most suitable for most
54
54
  **end users**. This is done by installing the latest stable release from
55
- PyPI.
55
+ PyPI:
56
56
 
57
57
  .. code-block:: bash
58
58
 
59
59
  pip install -U julearn
60
60
 
61
+ or via ``conda`` like so:
62
+
63
+ .. code-block:: bash
64
+
65
+ conda install -c conda-forge julearn
66
+
61
67
  #. Install the *latest pre-relase*: This version will have the
62
68
  **latest updates**. However, it is still under development and not yet
63
69
  officially released. Some features might still change before the next stable
@@ -90,4 +96,5 @@ The following optional dependencies are available:
90
96
  module is not compatible with newer Python versions and it is unmaintained.
91
97
  * ``skopt``: Using the ``"bayes"`` searcher (:class:`~skopt.BayesSearchCV`)
92
98
  requires the `scikit-optimize`_ package.
99
+ * ``optuna``: Using the ``"optuna"`` searcher (:class:`~optuna_integration.sklearn.OptunaSearchCV`) requires the `Optuna`_ and `optuna_integration`_ packages.
93
100
  * ``all``: Install all optional functional dependencies (except ``deslib``).
@@ -41,4 +41,5 @@
41
41
 
42
42
  .. _`DESlib`: https://github.com/scikit-learn-contrib/DESlib
43
43
  .. _`scikit-optimize`: https://scikit-optimize.readthedocs.io/en/stable/
44
- .. _`Optuna`: https://optuna.org
44
+ .. _`Optuna`: https://optuna.org
45
+ .. _`optuna_integration`: https://github.com/optuna/optuna-integration
@@ -12,5 +12,5 @@ __version__: str
12
12
  __version_tuple__: VERSION_TUPLE
13
13
  version_tuple: VERSION_TUPLE
14
14
 
15
- __version__ = version = '0.3.2.dev80'
16
- __version_tuple__ = version_tuple = (0, 3, 2, 'dev80')
15
+ __version__ = version = '0.3.3.dev4'
16
+ __version_tuple__ = version_tuple = (0, 3, 3, 'dev4')
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: julearn
3
- Version: 0.3.2.dev80
3
+ Version: 0.3.3.dev4
4
4
  Summary: Juelich Machine Learning Library
5
5
  Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Sami Hamdan <s.hamdan@fz-juelich.de>
6
6
  Maintainer-email: Sami Hamdan <s.hamdan@fz-juelich.de>
@@ -62,6 +62,7 @@ Requires-Dist: julearn[optuna,skopt,viz]; extra == "all"
62
62
  ![PyPI](https://img.shields.io/pypi/v/julearn?style=flat-square)
63
63
  ![PyPI - Python Version](https://img.shields.io/pypi/pyversions/julearn?style=flat-square)
64
64
  ![PyPI - Wheel](https://img.shields.io/pypi/wheel/julearn?style=flat-square)
65
+ [![Anaconda-Server Badge](https://anaconda.org/conda-forge/julearn/badges/version.svg)](https://anaconda.org/conda-forge/julearn)
65
66
  ![GitHub](https://img.shields.io/github/license/juaml/julearn?style=flat-square)
66
67
  ![Codecov](https://img.shields.io/codecov/c/github/juaml/julearn?style=flat-square)
67
68
  [![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/charliermarsh/ruff/main/assets/badge/v2.json)](https://github.com/charliermarsh/ruff)
@@ -83,6 +84,12 @@ Use `pip` to install from PyPI like so:
83
84
  pip install julearn
84
85
  ```
85
86
 
87
+ You can also install via `conda`, like so:
88
+
89
+ ```
90
+ conda install -c conda-forge julearn
91
+ ```
92
+
86
93
  ## Licensing
87
94
 
88
95
  julearn is released under the AGPL v3 license:
@@ -69,13 +69,11 @@ viz = [
69
69
  "bokeh>=3.0.0",
70
70
  "param>=2.0.0",
71
71
  ]
72
-
73
72
  skopt = ["scikit-optimize>=0.10.0,<0.11"]
74
73
  optuna = [
75
74
  "optuna>=3.6.0,<3.7",
76
75
  "optuna_integration>=3.6.0,<3.7",
77
76
  ]
78
-
79
77
  # Add all optional functional dependencies (skip deslib until its fixed)
80
78
  # This does not include dev/docs building dependencies
81
79
  all = ["julearn[viz,skopt,optuna]"]
@@ -226,7 +224,7 @@ showcontent = true
226
224
  name = "API Changes"
227
225
  showcontent = true
228
226
 
229
- ## Configure pyright to ignore assigment types until scikit-learn stubs are updated
227
+ ## Configure pyright to ignore assignment types until scikit-learn stubs are updated
230
228
  [tool.pyright]
231
229
  reportAssignmentType = "none"
232
230
  exclude = [
@@ -242,4 +240,4 @@ exclude = [
242
240
  ".eggs",
243
241
  "examples/", # Lots of problems due to bad stubs, avoid filling the example with # type:ignore
244
242
  "scratch/", # place to prototype, not to be checked
245
- ]
243
+ ]
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