julearn 0.3.1.dev12__tar.gz → 0.3.1.dev58__tar.gz

{julearn-0.3.1.dev12 → julearn-0.3.1.dev58}/.gitignore

@@ -134,4 +134,4 @@ cython_debug/
 # Versioning
 julearn/_version.py
 scratch/
-docs/whats_new.rst
+docs/whats_new.rst

julearn-0.3.1.dev58/.pre-commit-config.yaml

@@ -0,0 +1,48 @@
+ci:
+  autofix_prs: false
+  autoupdate_commit_msg: "chore: bump pre-commit repositories"
+
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.4.0
+    hooks:
+      - id: check-ast
+      - id: check-docstring-first
+      - id: check-executables-have-shebangs
+      - id: check-merge-conflict
+      - id: check-yaml
+      - id: check-toml
+      - id: debug-statements
+      - id: end-of-file-fixer
+      - id: trailing-whitespace
+        args: [--markdown-linebreak-ext=md]
+  - repo: https://github.com/abravalheri/validate-pyproject
+    rev: v0.12.2
+    hooks:
+      - id: validate-pyproject
+  - repo: https://github.com/psf/black
+    rev: 23.3.0
+    hooks:
+      - id: black
+        exclude: ^(docs/|examples/)
+        args: [--check]
+  - repo: https://github.com/charliermarsh/ruff-pre-commit
+    rev: v0.0.267
+    hooks:
+      - id: ruff
+        exclude: ^(__init__.py)
+        args: [--format, grouped, --show-fixes]
+  - repo: https://github.com/codespell-project/codespell
+    rev: v2.2.4
+    hooks:
+      - id: codespell
+        exclude: ^(.github/|docs/)
+        args: [--config, tox.ini]
+  - repo: https://github.com/pre-commit/pygrep-hooks
+    rev: v1.10.0
+    hooks:
+      - id: python-no-eval
+      - id: python-no-log-warn
+      - id: rst-backticks
+      - id: rst-directive-colons
+      - id: rst-inline-touching-normal

{julearn-0.3.1.dev12 → julearn-0.3.1.dev58}/AUTHORS.rst

@@ -2,4 +2,4 @@ Original Authors
 ===============
 * Sami Hamdan `@samihamdan <https://github.com/samihamdan>`_.
 * Kaustubh Patil `@kaurao <https://github.com/kaurao>`_.
-* Federico Raimondo `@fraimondo <https://github.com/fraimondo>`_.
+* Federico Raimondo `@fraimondo <https://github.com/fraimondo>`_.

{julearn-0.3.1.dev12 → julearn-0.3.1.dev58}/LICENSE.md

@@ -648,4 +648,4 @@ specific requirements.
 You should also get your employer (if you work as a programmer) or school,
 if any, to sign a “copyright disclaimer” for the program, if necessary.
 For more information on this, and how to apply and follow the GNU AGPL, see
-&lt;<http://www.gnu.org/licenses/>&gt;.
+&lt;<http://www.gnu.org/licenses/>&gt;.

{julearn-0.3.1.dev12 → julearn-0.3.1.dev58}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: julearn
-Version: 0.3.1.dev12
+Version: 0.3.1.dev58
 Summary: Juelich Machine Learning Library
 Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Sami Hamdan <s.hamdan@fz-juelich.de>
 Maintainer-email: Sami Hamdan <s.hamdan@fz-juelich.de>
@@ -32,6 +32,8 @@ License-File: AUTHORS.rst
 
 # julearn
 
+[![pre-commit](https://img.shields.io/badge/pre--commit-enabled-brightgreen?logo=pre-commit)](https://github.com/pre-commit/pre-commit)
+
 The Forschungszentrum Jülich Machine Learning Library
 
 Check our full documentation here: https://juaml.github.io/julearn/index.html
@@ -64,4 +66,3 @@ We still do not have a publication that you can use to cite julearn in your
 manuscript. However, julearn realies heavily on scikit-learn.
 
 Please cite scikit-learn: https://scikit-learn.org/stable/about.html#citing-scikit-learn
-

{julearn-0.3.1.dev12 → julearn-0.3.1.dev58}/README.md

@@ -1,5 +1,7 @@
 # julearn
 
+[![pre-commit](https://img.shields.io/badge/pre--commit-enabled-brightgreen?logo=pre-commit)](https://github.com/pre-commit/pre-commit)
+
 The Forschungszentrum Jülich Machine Learning Library
 
 Check our full documentation here: https://juaml.github.io/julearn/index.html
@@ -32,4 +34,3 @@ We still do not have a publication that you can use to cite julearn in your
 manuscript. However, julearn realies heavily on scikit-learn.
 
 Please cite scikit-learn: https://scikit-learn.org/stable/about.html#citing-scikit-learn
-

{julearn-0.3.1.dev12 → julearn-0.3.1.dev58}/codecov.yml

@@ -36,4 +36,4 @@ flag_management:
           threshold: 1%
         - type: patch
           target: 95%
-          threshold: 1%
+          threshold: 1%

{julearn-0.3.1.dev12 → julearn-0.3.1.dev58}/docs/_static/css/custom.css

@@ -18,4 +18,4 @@
 
 .sphx-glr-download {
   visibility: hidden;
-}
+}

{julearn-0.3.1.dev12 → julearn-0.3.1.dev58}/docs/_static/js/custom.js

@@ -11,4 +11,4 @@ for (i = 0; i < coll.length; i++) {
       content.style.display = "block";
     }
   });
-}
+}

{julearn-0.3.1.dev12 → julearn-0.3.1.dev58}/docs/_templates/class.rst

@@ -23,4 +23,4 @@
 
 .. raw:: html
 
-    <div style='clear:both'></div>
+    <div style='clear:both'></div>

{julearn-0.3.1.dev12 → julearn-0.3.1.dev58}/docs/_templates/versions.html

@@ -24,4 +24,4 @@
     {%- endif %}
   </div>
 </div>
-{%- endif %}
+{%- endif %}

{julearn-0.3.1.dev12 → julearn-0.3.1.dev58}/docs/api/base.rst

@@ -1,13 +1,12 @@
-
-****
 Base
-****
+====
 
 .. automodule:: julearn.base
    :no-members:
    :no-inherited-members:
 
-**Classes**
+Classes
+-------
 
 .. currentmodule:: julearn.base
 
@@ -22,8 +21,8 @@ Base
     ColumnTypes
     ColumnTypesLike
 
-
-**Functions**
+Functions
+---------
 
 .. currentmodule:: julearn.base
 
@@ -34,4 +33,4 @@ Base
     change_column_type
     get_column_type
     make_type_selector
-    ensure_column_types
+    ensure_column_types

{julearn-0.3.1.dev12 → julearn-0.3.1.dev58}/docs/api/index.rst

@@ -2,9 +2,8 @@
 
 .. _api:
 
-#########
-Reference
-#########
+API Reference
+=============
 
 .. toctree::
    :maxdepth: 1
@@ -20,4 +19,4 @@ Reference
    utils.rst
    prepare.rst
    stats.rst
-   viz.rst
+   viz.rst

{julearn-0.3.1.dev12 → julearn-0.3.1.dev58}/docs/api/inspect.rst

@@ -1,12 +1,12 @@
-*******
 Inspect
-*******
+=======
 
 .. automodule:: julearn.inspect
    :no-members:
    :no-inherited-members:
 
-**Classes**
+Classes
+-------
 
 .. currentmodule:: julearn.inspect
 
@@ -18,8 +18,8 @@ Inspect
     Inspector
     FoldsInspector
 
-
-**Functions**
+Functions
+---------
 
 .. currentmodule:: julearn.inspect
 
@@ -27,4 +27,4 @@ Inspect
    :toctree: generated/
    :template: function.rst
 
-    preprocess
+    preprocess

{julearn-0.3.1.dev12 → julearn-0.3.1.dev58}/docs/api/main.rst

@@ -1,12 +1,12 @@
-********
 Main API
-********
+========
 
 .. automodule:: julearn.api
    :no-members:
    :no-inherited-members:
 
-**Functions**
+Functions
+---------
 
 .. currentmodule:: julearn
 
@@ -14,4 +14,4 @@ Main API
    :toctree: generated/
    :template: function.rst
 
-    run_cross_validation
+    run_cross_validation

{julearn-0.3.1.dev12 → julearn-0.3.1.dev58}/docs/api/model_selection.rst

@@ -1,14 +1,14 @@
 .. _model_selection:
 
-***************
 Model Selection
-***************
+===============
 
 .. automodule:: julearn.model_selection
    :no-members:
    :no-inherited-members:
 
-**Classes**
+Classes
+-------
 
 .. currentmodule:: julearn.model_selection
 
@@ -23,7 +23,8 @@ Model Selection
     RepeatedContinuousStratifiedGroupKFold
     StratifiedBootstrap
 
-**Functions**
+Functions
+---------
 
 .. currentmodule:: julearn.model_selection
 
@@ -34,4 +35,4 @@ Model Selection
     get_searcher
     list_searchers
     register_searcher
-    reset_searcher_register
+    reset_searcher_register

{julearn-0.3.1.dev12 → julearn-0.3.1.dev58}/docs/api/models.rst

@@ -1,13 +1,12 @@
-
-******
 Models
-******
+======
 
 .. automodule:: julearn.models
    :no-members:
    :no-inherited-members:
 
-**Functions**
+Functions
+---------
 
 .. currentmodule:: julearn.models
 
@@ -20,10 +19,8 @@ Models
     register_model
     reset_model_register
 
-
-**************************
 Dynamic Selection (DESLib)
-**************************
+==========================
 
 .. important::
    This module requires the ``deslib`` optional dependencies. Please install
@@ -34,7 +31,8 @@ Dynamic Selection (DESLib)
    :no-members:
    :no-inherited-members:
 
-**Classes**
+Classes
+-------
 
 .. currentmodule:: julearn.models.dynamic
 
@@ -43,4 +41,4 @@ Dynamic Selection (DESLib)
    :toctree: generated/
    :template: class.rst
 
-    DynamicSelection
+    DynamicSelection

{julearn-0.3.1.dev12 → julearn-0.3.1.dev58}/docs/api/pipeline.rst

@@ -1,13 +1,12 @@
-
-********  
 Pipeline
-********
+========
 
 .. automodule:: julearn.pipeline
    :no-members:
    :no-inherited-members:
 
-**Classes**
+Classes
+-------
 
 .. currentmodule:: julearn
 
@@ -19,4 +18,4 @@ Pipeline
     PipelineCreator
     TargetPipelineCreator
     pipeline.JuTargetPipeline
-    pipeline.pipeline_creator.Step
+    pipeline.pipeline_creator.Step

{julearn-0.3.1.dev12 → julearn-0.3.1.dev58}/docs/api/prepare.rst

@@ -1,17 +1,18 @@
-*******
 Prepare
-*******
+=======
 
 .. automodule:: julearn.prepare
    :no-members:
    :no-inherited-members:
 
-**Functions**
+Functions
+---------
+
 .. currentmodule:: julearn.prepare
 
 .. autosummary::
    :toctree: generated/
    :template: function.rst
-  
+
     prepare_input_data
     check_consistency

{julearn-0.3.1.dev12 → julearn-0.3.1.dev58}/docs/api/scoring.rst

@@ -1,12 +1,12 @@
-*******
 Scoring
-*******
+=======
 
 .. automodule:: julearn.scoring
    :no-members:
    :no-inherited-members:
 
-**Functions**
+Functions
+---------
 
 .. currentmodule:: julearn.scoring
 
@@ -20,15 +20,15 @@ Scoring
     reset_scorer_register
     check_scoring
 
-***************
 Scoring Metrics
-***************
+===============
 
 .. automodule:: julearn.scoring.metrics
    :no-members:
    :no-inherited-members:
 
-**Functions**
+Functions
+---------
 
 .. currentmodule:: julearn.scoring.metrics
 
@@ -37,4 +37,4 @@ Scoring Metrics
    :template: function.rst
 
     r_corr
-    r2_corr
+    r2_corr

{julearn-0.3.1.dev12 → julearn-0.3.1.dev58}/docs/api/stats.rst

@@ -1,12 +1,12 @@
-*****
 Stats
-*****
+=====
 
 .. automodule:: julearn.stats
    :no-members:
    :no-inherited-members:
 
-**Functions**
+Functions
+---------
 
 .. currentmodule:: julearn.stats
 

{julearn-0.3.1.dev12 → julearn-0.3.1.dev58}/docs/api/transformers.rst

@@ -1,12 +1,13 @@
-************
 Transformers
-************
+============
 
 .. automodule:: julearn.transformers
    :no-members:
    :no-inherited-members:
 
-**Classes**
+Classes
+-------
+
 .. currentmodule:: julearn.transformers
 
 .. autosummary::
@@ -21,28 +22,30 @@ Transformers
     JuColumnTransformer
     confound_remover.ConfoundRemover
 
-**Functions**
+Functions
+---------
 
 .. currentmodule:: julearn.transformers
 
 .. autosummary::
    :toctree: generated/
    :template: function.rst
-  
+
     list_transformers
     get_transformer
     register_transformer
     reset_transformer_register
 
-*******************
 Target Transformers
-*******************
+===================
 
 .. automodule:: julearn.transformers.target
    :no-members:
    :no-inherited-members:
 
-**Classes**
+Classes
+-------
+
 .. currentmodule:: julearn.transformers.target
 
 .. autosummary::
@@ -54,16 +57,16 @@ Target Transformers
     TargetConfoundRemover
     TransformedTargetWarning
 
-**Functions**
+Functions
+---------
 
 .. currentmodule:: julearn.transformers.target
 
 .. autosummary::
    :toctree: generated/
    :template: function.rst
-  
+
     get_target_transformer
     list_target_transformers
     register_target_transformer
     reset_target_transformer_register
-

{julearn-0.3.1.dev12 → julearn-0.3.1.dev58}/docs/api/utils.rst

@@ -1,12 +1,13 @@
-*****
 Utils
-*****
+=====
 
 .. automodule:: julearn.utils
    :no-members:
    :no-inherited-members:
 
-**Classes**
+Classes
+-------
+
 .. currentmodule:: julearn.utils
 
 .. autosummary::
@@ -15,8 +16,8 @@ Utils
 
     logger
 
-
-**Functions**
+Functions
+---------
 .. currentmodule:: julearn.utils
 
 .. autosummary::
@@ -28,15 +29,16 @@ Utils
     warn_with_log
 
 
-******
 Typing
-******
+======
 
 .. automodule:: julearn.utils.typing
    :no-members:
    :no-inherited-members:
 
-**Classes**
+Classes
+-------
+
 .. currentmodule:: julearn.utils.typing
 
 .. autosummary::

{julearn-0.3.1.dev12 → julearn-0.3.1.dev58}/docs/api/viz.rst

@@ -1,6 +1,5 @@
-*************
 Visualization
-*************
+=============
 
 .. warning::
    This module is experimental. This means that it may change in the future
@@ -17,7 +16,8 @@ Visualization
    :no-members:
    :no-inherited-members:
 
-**Functions**
+Functions
+---------
 
 .. currentmodule:: julearn.viz