jinns 1.1.0__tar.gz → 1.2.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (162) hide show
  1. {jinns-1.1.0 → jinns-1.2.0}/.gitignore +4 -0
  2. {jinns-1.1.0 → jinns-1.2.0}/.gitlab-ci.yml +6 -5
  3. jinns-1.2.0/Notebooks/ODE/1D_Generalized_Lotka_Volterra.ipynb +783 -0
  4. jinns-1.2.0/Notebooks/ODE/linear_fo_equation.ipynb +534 -0
  5. {jinns-1.1.0 → jinns-1.2.0}/Notebooks/ODE/systems_biology_informed_neural_network.ipynb +44 -41
  6. jinns-1.2.0/Notebooks/PDE/1D_non_stationary_Burgers.ipynb +756 -0
  7. jinns-1.2.0/Notebooks/PDE/1D_non_stationary_Fisher_KPP_Bounded_Domain.ipynb +831 -0
  8. jinns-1.2.0/Notebooks/PDE/2D_Heat_inverse_problem.ipynb +872 -0
  9. {jinns-1.1.0 → jinns-1.2.0}/Notebooks/PDE/2D_Navier_Stokes_PipeFlow.ipynb +90 -118
  10. jinns-1.2.0/Notebooks/PDE/2D_Navier_Stokes_PipeFlow_Metamodel_hyperpinn.ipynb +1377 -0
  11. jinns-1.2.0/Notebooks/PDE/2D_Navier_Stokes_PipeFlow_SoftConstraints.ipynb +1134 -0
  12. {jinns-1.1.0 → jinns-1.2.0}/Notebooks/PDE/2D_Poisson_inverse_problem.ipynb +40 -32
  13. jinns-1.2.0/Notebooks/PDE/2D_non_stationary_OU.ipynb +1083 -0
  14. jinns-1.2.0/Notebooks/PDE/Reaction_Diffusion_2D_heterogenous_model.ipynb +1782 -0
  15. jinns-1.2.0/Notebooks/PDE/Reaction_Diffusion_2D_homogeneous_metamodel_hyperpinn_diffrax.ipynb +979 -0
  16. jinns-1.1.0/Notebooks/Tutorials/1D_non_stationary_Burger_JointEstimation_Vanilla.ipynb → jinns-1.2.0/Notebooks/Tutorials/1D_non_stationary_Burgers_JointEstimation_Vanilla.ipynb +128 -95
  17. jinns-1.2.0/Notebooks/Tutorials/implementing_your_own_PDE_problem.ipynb +740 -0
  18. jinns-1.2.0/Notebooks/Tutorials/introducing_validation_loss.ipynb +663 -0
  19. {jinns-1.1.0 → jinns-1.2.0}/Notebooks/Tutorials/load_save_model.ipynb +23 -26
  20. jinns-1.2.0/PKG-INFO +127 -0
  21. jinns-1.2.0/README.md +99 -0
  22. jinns-1.2.0/docs/api/advanced/differential_operators.md +30 -0
  23. jinns-1.2.0/docs/api/datagenerators/datagenerators_core.md +21 -0
  24. jinns-1.2.0/docs/api/datagenerators/datagenerators_other.md +15 -0
  25. {jinns-1.1.0 → jinns-1.2.0}/docs/api/loss/dynamic_loss.md +1 -1
  26. jinns-1.2.0/docs/api/solver.md +7 -0
  27. {jinns-1.1.0 → jinns-1.2.0}/docs/changelog.md +11 -3
  28. {jinns-1.1.0 → jinns-1.2.0}/docs/index.md +2 -2
  29. jinns-1.2.0/img/jinns-diagram.png +0 -0
  30. {jinns-1.1.0 → jinns-1.2.0}/jinns/data/_Batchs.py +4 -8
  31. {jinns-1.1.0 → jinns-1.2.0}/jinns/data/_DataGenerators.py +532 -341
  32. {jinns-1.1.0 → jinns-1.2.0}/jinns/loss/_DynamicLoss.py +150 -173
  33. {jinns-1.1.0 → jinns-1.2.0}/jinns/loss/_DynamicLossAbstract.py +25 -73
  34. {jinns-1.1.0 → jinns-1.2.0}/jinns/loss/_LossODE.py +3 -3
  35. {jinns-1.1.0 → jinns-1.2.0}/jinns/loss/_LossPDE.py +27 -36
  36. {jinns-1.1.0 → jinns-1.2.0}/jinns/loss/__init__.py +7 -6
  37. jinns-1.2.0/jinns/loss/_boundary_conditions.py +342 -0
  38. {jinns-1.1.0 → jinns-1.2.0}/jinns/loss/_loss_utils.py +78 -56
  39. jinns-1.2.0/jinns/loss/_operators.py +562 -0
  40. {jinns-1.1.0 → jinns-1.2.0}/jinns/plot/_plot.py +111 -98
  41. jinns-1.2.0/jinns/solver/_rar.py +270 -0
  42. {jinns-1.1.0 → jinns-1.2.0}/jinns/solver/_solve.py +73 -38
  43. jinns-1.2.0/jinns/solver/_utils.py +122 -0
  44. {jinns-1.1.0 → jinns-1.2.0}/jinns/utils/__init__.py +2 -0
  45. {jinns-1.1.0 → jinns-1.2.0}/jinns/utils/_containers.py +3 -1
  46. {jinns-1.1.0 → jinns-1.2.0}/jinns/utils/_hyperpinn.py +17 -7
  47. {jinns-1.1.0 → jinns-1.2.0}/jinns/utils/_pinn.py +17 -27
  48. jinns-1.2.0/jinns/utils/_ppinn.py +227 -0
  49. {jinns-1.1.0 → jinns-1.2.0}/jinns/utils/_save_load.py +13 -13
  50. {jinns-1.1.0 → jinns-1.2.0}/jinns/utils/_spinn.py +24 -43
  51. {jinns-1.1.0 → jinns-1.2.0}/jinns/utils/_types.py +1 -0
  52. jinns-1.2.0/jinns/utils/_utils.py +96 -0
  53. jinns-1.2.0/jinns.egg-info/PKG-INFO +127 -0
  54. {jinns-1.1.0 → jinns-1.2.0}/jinns.egg-info/SOURCES.txt +40 -24
  55. {jinns-1.1.0 → jinns-1.2.0}/mkdocs.yml +17 -8
  56. {jinns-1.1.0 → jinns-1.2.0}/pyproject.toml +12 -0
  57. {jinns-1.1.0 → jinns-1.2.0}/tests/conftest.py +1 -0
  58. jinns-1.1.0/tests/dataGenerator_tests/test_CubicMeshPDENonStatio_eqx.py → jinns-1.2.0/tests/dataGenerator_tests/test_CubicMeshPDENonStatio.py +62 -34
  59. jinns-1.1.0/tests/dataGenerator_tests/test_CubicMeshPDEStatio_eqx.py → jinns-1.2.0/tests/dataGenerator_tests/test_CubicMeshPDEStatio.py +33 -6
  60. jinns-1.1.0/tests/dataGenerator_tests/test_DataGeneratorODE_eqx.py → jinns-1.2.0/tests/dataGenerator_tests/test_DataGeneratorODE.py +30 -1
  61. jinns-1.2.0/tests/operator_tests/test_divergence_fwd.py +73 -0
  62. jinns-1.2.0/tests/operator_tests/test_divergence_rev.py +57 -0
  63. jinns-1.2.0/tests/operator_tests/test_laplacian_fwd.py +56 -0
  64. jinns-1.2.0/tests/operator_tests/test_laplacian_rev.py +63 -0
  65. jinns-1.2.0/tests/operator_tests/test_vectorial_laplacian_fwd.py +111 -0
  66. jinns-1.2.0/tests/operator_tests/test_vectorial_laplacian_rev.py +109 -0
  67. {jinns-1.1.0 → jinns-1.2.0}/tests/parameters_tests/test_DerivativeKeysODE.py +16 -13
  68. jinns-1.2.0/tests/plot_tests/test_plot1D.py +88 -0
  69. jinns-1.2.0/tests/plot_tests/test_plot2D.py +72 -0
  70. {jinns-1.1.0 → jinns-1.2.0}/tests/save_load_tests/test_saving_loading_hyperpinn.py +10 -13
  71. {jinns-1.1.0 → jinns-1.2.0}/tests/save_load_tests/test_saving_loading_pinn.py +9 -13
  72. {jinns-1.1.0 → jinns-1.2.0}/tests/save_load_tests/test_saving_loading_spinn.py +4 -5
  73. jinns-1.1.0/tests/sharding_tests/test_Burger_x32_multiple_shardings_eqx.py → jinns-1.2.0/tests/sharding_tests/test_Burgers_x32_multiple_shardings.py +33 -103
  74. jinns-1.2.0/tests/solver_tests/test_Burgers_x32.py +104 -0
  75. jinns-1.2.0/tests/solver_tests/test_Burgers_x64.py +104 -0
  76. jinns-1.1.0/tests/solver_tests/test_Fisher_x32_eqx.py → jinns-1.2.0/tests/solver_tests/test_Fisher_x32.py +11 -60
  77. jinns-1.1.0/tests/solver_tests/test_Fisher_x64_eqx.py → jinns-1.2.0/tests/solver_tests/test_Fisher_x64.py +12 -62
  78. jinns-1.1.0/tests/solver_tests/test_GLV_x32_eqx.py → jinns-1.2.0/tests/solver_tests/test_GLV_x32.py +10 -6
  79. jinns-1.1.0/tests/solver_tests/test_GLV_x64_eqx.py → jinns-1.2.0/tests/solver_tests/test_GLV_x64.py +10 -6
  80. jinns-1.1.0/tests/solver_tests/test_NSPipeFlow_x32_eqx.py → jinns-1.2.0/tests/solver_tests/test_NSPipeFlow_x32.py +2 -4
  81. jinns-1.1.0/tests/solver_tests/test_NSPipeFlow_x64_eqx.py → jinns-1.2.0/tests/solver_tests/test_NSPipeFlow_x64.py +3 -6
  82. jinns-1.1.0/tests/solver_tests/test_OU2D_x32_eqx.py → jinns-1.2.0/tests/solver_tests/test_OU2D_x32.py +18 -56
  83. {jinns-1.1.0 → jinns-1.2.0}/tests/solver_tests/test_nan_params_catch.py +7 -4
  84. {jinns-1.1.0 → jinns-1.2.0}/tests/solver_tests/test_parameter_tracker.py +13 -51
  85. {jinns-1.1.0 → jinns-1.2.0}/tests/solver_tests/test_rar_algorithm.py +39 -48
  86. jinns-1.1.0/tests/solver_tests_hyperpinn/test_NSPipeFlow_x32_eqx.py → jinns-1.2.0/tests/solver_tests_hyperpinn/test_NSPipeFlow_x32_hyperpinn.py +1 -2
  87. jinns-1.2.0/tests/solver_tests_spinn/test_Burgers_x32_spinn.py +113 -0
  88. jinns-1.1.0/tests/solver_tests_spinn/test_Fisher_x32_eqx.py → jinns-1.2.0/tests/solver_tests_spinn/test_Fisher_x32_spinn.py +23 -65
  89. jinns-1.1.0/tests/solver_tests_spinn/test_NSPipeFlow_x32_spinn_eqx.py → jinns-1.2.0/tests/solver_tests_spinn/test_NSPipeFlow_x32_spinn.py +6 -5
  90. jinns-1.1.0/tests/solver_tests_spinn/test_OU2D_x32_eqx.py → jinns-1.2.0/tests/solver_tests_spinn/test_OU2D_x32_spinn.py +18 -50
  91. jinns-1.1.0/tests/solver_tests_spinn/test_ReactionDiffusion_nonhomo_x64_eqx.py → jinns-1.2.0/tests/solver_tests_spinn/test_ReactionDiffusion_nonhomo_x64_spinn.py +26 -72
  92. {jinns-1.1.0 → jinns-1.2.0}/tests/utils_tests/test_hyperpinns.py +6 -12
  93. {jinns-1.1.0 → jinns-1.2.0}/tests/utils_tests/test_pinn.py +6 -12
  94. jinns-1.2.0/tests/utils_tests/test_solver_utils.py +143 -0
  95. {jinns-1.1.0 → jinns-1.2.0}/tests/utils_tests/test_spinn.py +3 -6
  96. jinns-1.2.0/tests/utils_tests/test_subtract_with_check.py +23 -0
  97. jinns-1.2.0/tests/validation_tests/test_vanilla_validation.py +146 -0
  98. jinns-1.1.0/Notebooks/ODE/1D_Generalized_Lotka_Volterra.ipynb +0 -813
  99. jinns-1.1.0/Notebooks/ODE/linear_fo_equation.ipynb +0 -581
  100. jinns-1.1.0/Notebooks/PDE/1D_non_stationary_Burger.ipynb +0 -814
  101. jinns-1.1.0/Notebooks/PDE/1D_non_stationary_Fisher_KPP_Bounded_Domain.ipynb +0 -883
  102. jinns-1.1.0/Notebooks/PDE/2D_Heat_inverse_problem.ipynb +0 -923
  103. jinns-1.1.0/Notebooks/PDE/2D_Navier_Stokes_PipeFlow_Metamodel_hyperpinn.ipynb +0 -1432
  104. jinns-1.1.0/Notebooks/PDE/2D_Navier_Stokes_PipeFlow_SoftConstraints.ipynb +0 -1226
  105. jinns-1.1.0/Notebooks/PDE/2D_non_stationary_OU.ipynb +0 -1163
  106. jinns-1.1.0/Notebooks/PDE/Reaction_Diffusion_2D_heterogenous_model.ipynb +0 -1890
  107. jinns-1.1.0/Notebooks/PDE/Reaction_Diffusion_2D_homogeneous_metamodel_hyperpinn_diffrax.ipynb +0 -1002
  108. jinns-1.1.0/Notebooks/Tutorials/implementing_your_own_PDE_problem.ipynb +0 -699
  109. jinns-1.1.0/Notebooks/Tutorials/introducing_validation_loss.ipynb +0 -694
  110. jinns-1.1.0/PKG-INFO +0 -85
  111. jinns-1.1.0/README.md +0 -57
  112. jinns-1.1.0/docs/api/advanced/differential_operators.md +0 -22
  113. jinns-1.1.0/jinns/loss/_boundary_conditions.py +0 -473
  114. jinns-1.1.0/jinns/loss/_operators.py +0 -305
  115. jinns-1.1.0/jinns/solver/_rar.py +0 -575
  116. jinns-1.1.0/jinns/utils/_utils.py +0 -68
  117. jinns-1.1.0/jinns.egg-info/PKG-INFO +0 -85
  118. jinns-1.1.0/tests/runtests.sh +0 -40
  119. jinns-1.1.0/tests/solver_tests/test_Burger_x32_eqx.py +0 -149
  120. jinns-1.1.0/tests/solver_tests/test_Burger_x64_eqx.py +0 -149
  121. jinns-1.1.0/tests/solver_tests_spinn/test_Burger_x32_eqx.py +0 -153
  122. {jinns-1.1.0 → jinns-1.2.0}/.pre-commit-config.yaml +0 -0
  123. {jinns-1.1.0 → jinns-1.2.0}/AUTHORS +0 -0
  124. {jinns-1.1.0 → jinns-1.2.0}/LICENSE +0 -0
  125. {jinns-1.1.0 → jinns-1.2.0}/Notebooks/ODE/sbinn_data/glucose.dat +0 -0
  126. {jinns-1.1.0 → jinns-1.2.0}/Notebooks/ODE/sbinn_data/meal.dat +0 -0
  127. {jinns-1.1.0 → jinns-1.2.0}/Notebooks/PDE/2d_nonstatio_ou_standardsampling.png +0 -0
  128. {jinns-1.1.0 → jinns-1.2.0}/Notebooks/PDE/OU_1D_nonstatio_solution_grid.npy +0 -0
  129. {jinns-1.1.0 → jinns-1.2.0}/Notebooks/Tutorials/burger_solution_grid.npy +0 -0
  130. {jinns-1.1.0 → jinns-1.2.0}/codemeta.json +0 -0
  131. {jinns-1.1.0 → jinns-1.2.0}/docs/README.md +0 -0
  132. {jinns-1.1.0 → jinns-1.2.0}/docs/_static/custom_css.css +0 -0
  133. {jinns-1.1.0 → jinns-1.2.0}/docs/_static/favicon.png +0 -0
  134. {jinns-1.1.0 → jinns-1.2.0}/docs/api/advanced/derivative_keys.md +0 -0
  135. {jinns-1.1.0 → jinns-1.2.0}/docs/api/loss/loss_xde.md +0 -0
  136. {jinns-1.1.0 → jinns-1.2.0}/docs/api/loss/systems_of_xde.md +0 -0
  137. {jinns-1.1.0 → jinns-1.2.0}/docs/api/pinn/hyperpinn.md +0 -0
  138. {jinns-1.1.0 → jinns-1.2.0}/docs/api/pinn/pinn.md +0 -0
  139. {jinns-1.1.0 → jinns-1.2.0}/docs/api/pinn/save_load.md +0 -0
  140. {jinns-1.1.0 → jinns-1.2.0}/docs/api/pinn/spinn.md +0 -0
  141. {jinns-1.1.0 → jinns-1.2.0}/docs/api/plot.md +0 -0
  142. {jinns-1.1.0 → jinns-1.2.0}/docs/doc_requirements.txt +0 -0
  143. {jinns-1.1.0 → jinns-1.2.0}/docs/javascripts/katex.js +0 -0
  144. {jinns-1.1.0 → jinns-1.2.0}/docs/maths/fokker_planck.md +0 -0
  145. {jinns-1.1.0 → jinns-1.2.0}/docs/maths/introduction_to_pinns.md +0 -0
  146. {jinns-1.1.0 → jinns-1.2.0}/jinns/__init__.py +0 -0
  147. {jinns-1.1.0 → jinns-1.2.0}/jinns/data/__init__.py +0 -0
  148. {jinns-1.1.0 → jinns-1.2.0}/jinns/experimental/__init__.py +0 -0
  149. {jinns-1.1.0 → jinns-1.2.0}/jinns/experimental/_diffrax_solver.py +0 -0
  150. {jinns-1.1.0 → jinns-1.2.0}/jinns/loss/_loss_weights.py +0 -0
  151. {jinns-1.1.0 → jinns-1.2.0}/jinns/parameters/__init__.py +0 -0
  152. {jinns-1.1.0 → jinns-1.2.0}/jinns/parameters/_derivative_keys.py +0 -0
  153. {jinns-1.1.0 → jinns-1.2.0}/jinns/parameters/_params.py +0 -0
  154. {jinns-1.1.0 → jinns-1.2.0}/jinns/plot/__init__.py +0 -0
  155. {jinns-1.1.0 → jinns-1.2.0}/jinns/solver/__init__.py +0 -0
  156. {jinns-1.1.0 → jinns-1.2.0}/jinns/validation/__init__.py +0 -0
  157. {jinns-1.1.0 → jinns-1.2.0}/jinns/validation/_validation.py +0 -0
  158. {jinns-1.1.0 → jinns-1.2.0}/jinns.egg-info/dependency_links.txt +0 -0
  159. {jinns-1.1.0 → jinns-1.2.0}/jinns.egg-info/requires.txt +0 -0
  160. {jinns-1.1.0 → jinns-1.2.0}/jinns.egg-info/top_level.txt +0 -0
  161. {jinns-1.1.0 → jinns-1.2.0}/setup.cfg +0 -0
  162. /jinns-1.1.0/tests/dataGenerator_tests/test_DataGeneratorParameter_eqx.py → /jinns-1.2.0/tests/dataGenerator_tests/test_DataGeneratorParameter.py +0 -0
{jinns-1.1.0 → jinns-1.2.0}/.gitignore RENAMED
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{jinns-1.1.0 → jinns-1.2.0}/.gitlab-ci.yml RENAMED
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  - mkdocs build # twice, see https://github.com/patrick-kidger/pytkdocs_tweaks