jinns 1.0.0__tar.gz → 1.2.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (164) hide show
  1. {jinns-1.0.0 → jinns-1.2.0}/.gitignore +4 -0
  2. {jinns-1.0.0 → jinns-1.2.0}/.gitlab-ci.yml +6 -5
  3. jinns-1.2.0/AUTHORS +2 -0
  4. jinns-1.2.0/Notebooks/ODE/1D_Generalized_Lotka_Volterra.ipynb +783 -0
  5. jinns-1.2.0/Notebooks/ODE/linear_fo_equation.ipynb +534 -0
  6. jinns-1.2.0/Notebooks/ODE/systems_biology_informed_neural_network.ipynb +1037 -0
  7. jinns-1.2.0/Notebooks/PDE/1D_non_stationary_Burgers.ipynb +756 -0
  8. jinns-1.2.0/Notebooks/PDE/1D_non_stationary_Fisher_KPP_Bounded_Domain.ipynb +831 -0
  9. jinns-1.2.0/Notebooks/PDE/2D_Heat_inverse_problem.ipynb +872 -0
  10. {jinns-1.0.0 → jinns-1.2.0}/Notebooks/PDE/2D_Navier_Stokes_PipeFlow.ipynb +92 -119
  11. jinns-1.2.0/Notebooks/PDE/2D_Navier_Stokes_PipeFlow_Metamodel_hyperpinn.ipynb +1377 -0
  12. jinns-1.2.0/Notebooks/PDE/2D_Navier_Stokes_PipeFlow_SoftConstraints.ipynb +1134 -0
  13. {jinns-1.0.0 → jinns-1.2.0}/Notebooks/PDE/2D_Poisson_inverse_problem.ipynb +40 -31
  14. jinns-1.2.0/Notebooks/PDE/2D_non_stationary_OU.ipynb +1083 -0
  15. jinns-1.2.0/Notebooks/PDE/Reaction_Diffusion_2D_heterogenous_model.ipynb +1782 -0
  16. jinns-1.2.0/Notebooks/PDE/Reaction_Diffusion_2D_homogeneous_metamodel_hyperpinn_diffrax.ipynb +979 -0
  17. jinns-1.2.0/Notebooks/Tutorials/1D_non_stationary_Burgers_JointEstimation_Vanilla.ipynb +860 -0
  18. jinns-1.2.0/Notebooks/Tutorials/implementing_your_own_PDE_problem.ipynb +740 -0
  19. jinns-1.2.0/Notebooks/Tutorials/introducing_validation_loss.ipynb +663 -0
  20. {jinns-1.0.0 → jinns-1.2.0}/Notebooks/Tutorials/load_save_model.ipynb +23 -26
  21. jinns-1.2.0/PKG-INFO +127 -0
  22. jinns-1.2.0/README.md +99 -0
  23. jinns-1.2.0/codemeta.json +60 -0
  24. jinns-1.2.0/docs/api/advanced/differential_operators.md +30 -0
  25. jinns-1.2.0/docs/api/datagenerators/datagenerators_core.md +21 -0
  26. jinns-1.2.0/docs/api/datagenerators/datagenerators_other.md +15 -0
  27. {jinns-1.0.0 → jinns-1.2.0}/docs/api/loss/dynamic_loss.md +7 -1
  28. jinns-1.2.0/docs/api/solver.md +7 -0
  29. {jinns-1.0.0 → jinns-1.2.0}/docs/changelog.md +18 -3
  30. {jinns-1.0.0 → jinns-1.2.0}/docs/index.md +2 -2
  31. jinns-1.2.0/img/jinns-diagram.png +0 -0
  32. {jinns-1.0.0 → jinns-1.2.0}/jinns/data/_Batchs.py +4 -8
  33. {jinns-1.0.0 → jinns-1.2.0}/jinns/data/_DataGenerators.py +532 -341
  34. {jinns-1.0.0 → jinns-1.2.0}/jinns/loss/_DynamicLoss.py +150 -173
  35. {jinns-1.0.0 → jinns-1.2.0}/jinns/loss/_DynamicLossAbstract.py +27 -73
  36. {jinns-1.0.0 → jinns-1.2.0}/jinns/loss/_LossODE.py +45 -26
  37. {jinns-1.0.0 → jinns-1.2.0}/jinns/loss/_LossPDE.py +85 -84
  38. {jinns-1.0.0 → jinns-1.2.0}/jinns/loss/__init__.py +7 -6
  39. jinns-1.2.0/jinns/loss/_boundary_conditions.py +342 -0
  40. {jinns-1.0.0 → jinns-1.2.0}/jinns/loss/_loss_utils.py +85 -58
  41. jinns-1.2.0/jinns/loss/_operators.py +562 -0
  42. jinns-1.2.0/jinns/parameters/_derivative_keys.py +521 -0
  43. {jinns-1.0.0 → jinns-1.2.0}/jinns/plot/_plot.py +111 -98
  44. jinns-1.2.0/jinns/solver/_rar.py +270 -0
  45. {jinns-1.0.0 → jinns-1.2.0}/jinns/solver/_solve.py +73 -38
  46. jinns-1.2.0/jinns/solver/_utils.py +122 -0
  47. {jinns-1.0.0 → jinns-1.2.0}/jinns/utils/__init__.py +2 -0
  48. {jinns-1.0.0 → jinns-1.2.0}/jinns/utils/_containers.py +3 -1
  49. {jinns-1.0.0 → jinns-1.2.0}/jinns/utils/_hyperpinn.py +17 -7
  50. {jinns-1.0.0 → jinns-1.2.0}/jinns/utils/_pinn.py +17 -27
  51. jinns-1.2.0/jinns/utils/_ppinn.py +227 -0
  52. {jinns-1.0.0 → jinns-1.2.0}/jinns/utils/_save_load.py +13 -13
  53. {jinns-1.0.0 → jinns-1.2.0}/jinns/utils/_spinn.py +24 -43
  54. {jinns-1.0.0 → jinns-1.2.0}/jinns/utils/_types.py +1 -0
  55. jinns-1.2.0/jinns/utils/_utils.py +96 -0
  56. jinns-1.2.0/jinns.egg-info/PKG-INFO +127 -0
  57. {jinns-1.0.0 → jinns-1.2.0}/jinns.egg-info/SOURCES.txt +44 -24
  58. {jinns-1.0.0 → jinns-1.2.0}/mkdocs.yml +17 -7
  59. {jinns-1.0.0 → jinns-1.2.0}/pyproject.toml +12 -0
  60. {jinns-1.0.0 → jinns-1.2.0}/tests/conftest.py +1 -0
  61. jinns-1.0.0/tests/dataGenerator_tests/test_CubicMeshPDENonStatio_eqx.py → jinns-1.2.0/tests/dataGenerator_tests/test_CubicMeshPDENonStatio.py +62 -34
  62. jinns-1.0.0/tests/dataGenerator_tests/test_CubicMeshPDEStatio_eqx.py → jinns-1.2.0/tests/dataGenerator_tests/test_CubicMeshPDEStatio.py +33 -6
  63. jinns-1.0.0/tests/dataGenerator_tests/test_DataGeneratorODE_eqx.py → jinns-1.2.0/tests/dataGenerator_tests/test_DataGeneratorODE.py +30 -1
  64. jinns-1.2.0/tests/operator_tests/test_divergence_fwd.py +73 -0
  65. jinns-1.2.0/tests/operator_tests/test_divergence_rev.py +57 -0
  66. jinns-1.2.0/tests/operator_tests/test_laplacian_fwd.py +56 -0
  67. jinns-1.2.0/tests/operator_tests/test_laplacian_rev.py +63 -0
  68. jinns-1.2.0/tests/operator_tests/test_vectorial_laplacian_fwd.py +111 -0
  69. jinns-1.2.0/tests/operator_tests/test_vectorial_laplacian_rev.py +109 -0
  70. jinns-1.2.0/tests/parameters_tests/test_DerivativeKeysODE.py +287 -0
  71. jinns-1.2.0/tests/plot_tests/test_plot1D.py +88 -0
  72. jinns-1.2.0/tests/plot_tests/test_plot2D.py +72 -0
  73. {jinns-1.0.0 → jinns-1.2.0}/tests/save_load_tests/test_saving_loading_hyperpinn.py +10 -13
  74. {jinns-1.0.0 → jinns-1.2.0}/tests/save_load_tests/test_saving_loading_pinn.py +9 -13
  75. {jinns-1.0.0 → jinns-1.2.0}/tests/save_load_tests/test_saving_loading_spinn.py +4 -5
  76. jinns-1.0.0/tests/sharding_tests/test_Burger_x32_multiple_shardings_eqx.py → jinns-1.2.0/tests/sharding_tests/test_Burgers_x32_multiple_shardings.py +35 -103
  77. jinns-1.2.0/tests/solver_tests/test_Burgers_x32.py +104 -0
  78. jinns-1.2.0/tests/solver_tests/test_Burgers_x64.py +104 -0
  79. jinns-1.0.0/tests/solver_tests/test_Fisher_x32_eqx.py → jinns-1.2.0/tests/solver_tests/test_Fisher_x32.py +12 -60
  80. jinns-1.0.0/tests/solver_tests/test_Fisher_x64_eqx.py → jinns-1.2.0/tests/solver_tests/test_Fisher_x64.py +13 -62
  81. jinns-1.0.0/tests/solver_tests/test_GLV_x32_eqx.py → jinns-1.2.0/tests/solver_tests/test_GLV_x32.py +11 -6
  82. jinns-1.0.0/tests/solver_tests/test_GLV_x64_eqx.py → jinns-1.2.0/tests/solver_tests/test_GLV_x64.py +11 -6
  83. jinns-1.0.0/tests/solver_tests/test_NSPipeFlow_x32_eqx.py → jinns-1.2.0/tests/solver_tests/test_NSPipeFlow_x32.py +3 -4
  84. jinns-1.0.0/tests/solver_tests/test_NSPipeFlow_x64_eqx.py → jinns-1.2.0/tests/solver_tests/test_NSPipeFlow_x64.py +4 -6
  85. jinns-1.0.0/tests/solver_tests/test_OU2D_x32_eqx.py → jinns-1.2.0/tests/solver_tests/test_OU2D_x32.py +19 -56
  86. {jinns-1.0.0 → jinns-1.2.0}/tests/solver_tests/test_nan_params_catch.py +8 -4
  87. {jinns-1.0.0 → jinns-1.2.0}/tests/solver_tests/test_parameter_tracker.py +14 -51
  88. {jinns-1.0.0 → jinns-1.2.0}/tests/solver_tests/test_rar_algorithm.py +39 -47
  89. jinns-1.0.0/tests/solver_tests_hyperpinn/test_NSPipeFlow_x32_eqx.py → jinns-1.2.0/tests/solver_tests_hyperpinn/test_NSPipeFlow_x32_hyperpinn.py +2 -2
  90. jinns-1.2.0/tests/solver_tests_spinn/test_Burgers_x32_spinn.py +113 -0
  91. jinns-1.0.0/tests/solver_tests_spinn/test_Fisher_x32_eqx.py → jinns-1.2.0/tests/solver_tests_spinn/test_Fisher_x32_spinn.py +24 -65
  92. jinns-1.0.0/tests/solver_tests_spinn/test_NSPipeFlow_x32_spinn_eqx.py → jinns-1.2.0/tests/solver_tests_spinn/test_NSPipeFlow_x32_spinn.py +7 -5
  93. jinns-1.0.0/tests/solver_tests_spinn/test_OU2D_x32_eqx.py → jinns-1.2.0/tests/solver_tests_spinn/test_OU2D_x32_spinn.py +19 -50
  94. jinns-1.0.0/tests/solver_tests_spinn/test_ReactionDiffusion_nonhomo_x64_eqx.py → jinns-1.2.0/tests/solver_tests_spinn/test_ReactionDiffusion_nonhomo_x64_spinn.py +27 -72
  95. {jinns-1.0.0 → jinns-1.2.0}/tests/utils_tests/test_hyperpinns.py +6 -12
  96. {jinns-1.0.0 → jinns-1.2.0}/tests/utils_tests/test_pinn.py +6 -12
  97. jinns-1.2.0/tests/utils_tests/test_solver_utils.py +143 -0
  98. {jinns-1.0.0 → jinns-1.2.0}/tests/utils_tests/test_spinn.py +3 -6
  99. jinns-1.2.0/tests/utils_tests/test_subtract_with_check.py +23 -0
  100. jinns-1.2.0/tests/validation_tests/test_vanilla_validation.py +146 -0
  101. jinns-1.0.0/Notebooks/ODE/1D_Generalized_Lotka_Volterra.ipynb +0 -812
  102. jinns-1.0.0/Notebooks/ODE/linear_fo_equation.ipynb +0 -580
  103. jinns-1.0.0/Notebooks/ODE/systems_biology_informed_neural_network.ipynb +0 -1104
  104. jinns-1.0.0/Notebooks/PDE/1D_non_stationary_Burger.ipynb +0 -812
  105. jinns-1.0.0/Notebooks/PDE/1D_non_stationary_Fisher_KPP_Bounded_Domain.ipynb +0 -881
  106. jinns-1.0.0/Notebooks/PDE/2D_Heat_inverse_problem.ipynb +0 -922
  107. jinns-1.0.0/Notebooks/PDE/2D_Navier_Stokes_PipeFlow_Metamodel_hyperpinn.ipynb +0 -1431
  108. jinns-1.0.0/Notebooks/PDE/2D_Navier_Stokes_PipeFlow_SoftConstraints.ipynb +0 -1225
  109. jinns-1.0.0/Notebooks/PDE/2D_non_stationary_OU.ipynb +0 -1162
  110. jinns-1.0.0/Notebooks/PDE/Reaction_Diffusion_2D_heterogenous_model.ipynb +0 -1884
  111. jinns-1.0.0/Notebooks/PDE/Reaction_Diffusion_2D_homogeneous_metamodel_hyperpinn_diffrax.ipynb +0 -1001
  112. jinns-1.0.0/Notebooks/Tutorials/implementing_your_own_PDE_problem.ipynb +0 -692
  113. jinns-1.0.0/Notebooks/Tutorials/introducing_validation_loss.ipynb +0 -701
  114. jinns-1.0.0/PKG-INFO +0 -84
  115. jinns-1.0.0/README.md +0 -57
  116. jinns-1.0.0/docs/api/advanced/differential_operators.md +0 -22
  117. jinns-1.0.0/jinns/loss/_boundary_conditions.py +0 -473
  118. jinns-1.0.0/jinns/loss/_operators.py +0 -305
  119. jinns-1.0.0/jinns/parameters/_derivative_keys.py +0 -94
  120. jinns-1.0.0/jinns/solver/_rar.py +0 -575
  121. jinns-1.0.0/jinns/utils/_utils.py +0 -68
  122. jinns-1.0.0/jinns.egg-info/PKG-INFO +0 -84
  123. jinns-1.0.0/tests/runtests.sh +0 -34
  124. jinns-1.0.0/tests/solver_tests/test_Burger_x32_eqx.py +0 -148
  125. jinns-1.0.0/tests/solver_tests/test_Burger_x64_eqx.py +0 -148
  126. jinns-1.0.0/tests/solver_tests_spinn/test_Burger_x32_eqx.py +0 -152
  127. {jinns-1.0.0 → jinns-1.2.0}/.pre-commit-config.yaml +0 -0
  128. {jinns-1.0.0 → jinns-1.2.0}/LICENSE +0 -0
  129. {jinns-1.0.0 → jinns-1.2.0}/Notebooks/ODE/sbinn_data/glucose.dat +0 -0
  130. {jinns-1.0.0 → jinns-1.2.0}/Notebooks/ODE/sbinn_data/meal.dat +0 -0
  131. {jinns-1.0.0 → jinns-1.2.0}/Notebooks/PDE/2d_nonstatio_ou_standardsampling.png +0 -0
  132. {jinns-1.0.0 → jinns-1.2.0}/Notebooks/PDE/OU_1D_nonstatio_solution_grid.npy +0 -0
  133. {jinns-1.0.0/Notebooks/PDE → jinns-1.2.0/Notebooks/Tutorials}/burger_solution_grid.npy +0 -0
  134. {jinns-1.0.0 → jinns-1.2.0}/docs/README.md +0 -0
  135. {jinns-1.0.0 → jinns-1.2.0}/docs/_static/custom_css.css +0 -0
  136. {jinns-1.0.0 → jinns-1.2.0}/docs/_static/favicon.png +0 -0
  137. {jinns-1.0.0 → jinns-1.2.0}/docs/api/advanced/derivative_keys.md +0 -0
  138. {jinns-1.0.0 → jinns-1.2.0}/docs/api/loss/loss_xde.md +0 -0
  139. {jinns-1.0.0 → jinns-1.2.0}/docs/api/loss/systems_of_xde.md +0 -0
  140. {jinns-1.0.0 → jinns-1.2.0}/docs/api/pinn/hyperpinn.md +0 -0
  141. {jinns-1.0.0 → jinns-1.2.0}/docs/api/pinn/pinn.md +0 -0
  142. {jinns-1.0.0 → jinns-1.2.0}/docs/api/pinn/save_load.md +0 -0
  143. {jinns-1.0.0 → jinns-1.2.0}/docs/api/pinn/spinn.md +0 -0
  144. {jinns-1.0.0 → jinns-1.2.0}/docs/api/plot.md +0 -0
  145. {jinns-1.0.0 → jinns-1.2.0}/docs/doc_requirements.txt +0 -0
  146. {jinns-1.0.0 → jinns-1.2.0}/docs/javascripts/katex.js +0 -0
  147. {jinns-1.0.0 → jinns-1.2.0}/docs/maths/fokker_planck.md +0 -0
  148. {jinns-1.0.0 → jinns-1.2.0}/docs/maths/introduction_to_pinns.md +0 -0
  149. {jinns-1.0.0 → jinns-1.2.0}/jinns/__init__.py +0 -0
  150. {jinns-1.0.0 → jinns-1.2.0}/jinns/data/__init__.py +0 -0
  151. {jinns-1.0.0 → jinns-1.2.0}/jinns/experimental/__init__.py +0 -0
  152. {jinns-1.0.0 → jinns-1.2.0}/jinns/experimental/_diffrax_solver.py +0 -0
  153. {jinns-1.0.0 → jinns-1.2.0}/jinns/loss/_loss_weights.py +0 -0
  154. {jinns-1.0.0 → jinns-1.2.0}/jinns/parameters/__init__.py +0 -0
  155. {jinns-1.0.0 → jinns-1.2.0}/jinns/parameters/_params.py +0 -0
  156. {jinns-1.0.0 → jinns-1.2.0}/jinns/plot/__init__.py +0 -0
  157. {jinns-1.0.0 → jinns-1.2.0}/jinns/solver/__init__.py +0 -0
  158. {jinns-1.0.0 → jinns-1.2.0}/jinns/validation/__init__.py +0 -0
  159. {jinns-1.0.0 → jinns-1.2.0}/jinns/validation/_validation.py +0 -0
  160. {jinns-1.0.0 → jinns-1.2.0}/jinns.egg-info/dependency_links.txt +0 -0
  161. {jinns-1.0.0 → jinns-1.2.0}/jinns.egg-info/requires.txt +0 -0
  162. {jinns-1.0.0 → jinns-1.2.0}/jinns.egg-info/top_level.txt +0 -0
  163. {jinns-1.0.0 → jinns-1.2.0}/setup.cfg +0 -0
  164. /jinns-1.0.0/tests/dataGenerator_tests/test_DataGeneratorParameter_eqx.py → /jinns-1.2.0/tests/dataGenerator_tests/test_DataGeneratorParameter.py +0 -0
{jinns-1.0.0 → jinns-1.2.0}/.gitignore RENAMED
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{jinns-1.0.0 → jinns-1.2.0}/.gitlab-ci.yml RENAMED
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jinns-1.2.0/AUTHORS ADDED
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+ Hugo Gangloff <hugo.gangloff@inrae.fr>
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+ Nicolas Jouvin <nicolas.jouvin@inrae.fr>