jinns 1.0.0__tar.gz → 1.1.0__tar.gz

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Files changed (125) hide show
  1. jinns-1.1.0/AUTHORS +2 -0
  2. {jinns-1.0.0 → jinns-1.1.0}/Notebooks/ODE/1D_Generalized_Lotka_Volterra.ipynb +2 -1
  3. {jinns-1.0.0 → jinns-1.1.0}/Notebooks/ODE/linear_fo_equation.ipynb +2 -1
  4. jinns-1.1.0/Notebooks/ODE/systems_biology_informed_neural_network.ipynb +1034 -0
  5. {jinns-1.0.0 → jinns-1.1.0}/Notebooks/PDE/1D_non_stationary_Burger.ipynb +4 -2
  6. {jinns-1.0.0 → jinns-1.1.0}/Notebooks/PDE/1D_non_stationary_Fisher_KPP_Bounded_Domain.ipynb +2 -0
  7. {jinns-1.0.0 → jinns-1.1.0}/Notebooks/PDE/2D_Heat_inverse_problem.ipynb +1 -0
  8. {jinns-1.0.0 → jinns-1.1.0}/Notebooks/PDE/2D_Navier_Stokes_PipeFlow.ipynb +2 -1
  9. {jinns-1.0.0 → jinns-1.1.0}/Notebooks/PDE/2D_Navier_Stokes_PipeFlow_Metamodel_hyperpinn.ipynb +1 -0
  10. {jinns-1.0.0 → jinns-1.1.0}/Notebooks/PDE/2D_Navier_Stokes_PipeFlow_SoftConstraints.ipynb +2 -1
  11. {jinns-1.0.0 → jinns-1.1.0}/Notebooks/PDE/2D_Poisson_inverse_problem.ipynb +1 -0
  12. {jinns-1.0.0 → jinns-1.1.0}/Notebooks/PDE/2D_non_stationary_OU.ipynb +2 -1
  13. jinns-1.1.0/Notebooks/PDE/Reaction_Diffusion_2D_heterogenous_model.ipynb +1890 -0
  14. {jinns-1.0.0 → jinns-1.1.0}/Notebooks/PDE/Reaction_Diffusion_2D_homogeneous_metamodel_hyperpinn_diffrax.ipynb +2 -1
  15. jinns-1.1.0/Notebooks/Tutorials/1D_non_stationary_Burger_JointEstimation_Vanilla.ipynb +827 -0
  16. {jinns-1.0.0 → jinns-1.1.0}/Notebooks/Tutorials/implementing_your_own_PDE_problem.ipynb +27 -20
  17. {jinns-1.0.0 → jinns-1.1.0}/Notebooks/Tutorials/introducing_validation_loss.ipynb +3 -10
  18. {jinns-1.0.0 → jinns-1.1.0}/PKG-INFO +2 -1
  19. jinns-1.1.0/codemeta.json +60 -0
  20. {jinns-1.0.0 → jinns-1.1.0}/docs/api/loss/dynamic_loss.md +6 -0
  21. {jinns-1.0.0 → jinns-1.1.0}/docs/changelog.md +7 -0
  22. {jinns-1.0.0 → jinns-1.1.0}/jinns/loss/_DynamicLossAbstract.py +2 -0
  23. {jinns-1.0.0 → jinns-1.1.0}/jinns/loss/_LossODE.py +42 -23
  24. {jinns-1.0.0 → jinns-1.1.0}/jinns/loss/_LossPDE.py +58 -48
  25. {jinns-1.0.0 → jinns-1.1.0}/jinns/loss/_loss_utils.py +7 -2
  26. jinns-1.1.0/jinns/parameters/_derivative_keys.py +521 -0
  27. {jinns-1.0.0 → jinns-1.1.0}/jinns.egg-info/PKG-INFO +2 -1
  28. {jinns-1.0.0 → jinns-1.1.0}/jinns.egg-info/SOURCES.txt +5 -1
  29. {jinns-1.0.0 → jinns-1.1.0}/mkdocs.yml +1 -0
  30. jinns-1.1.0/tests/parameters_tests/test_DerivativeKeysODE.py +284 -0
  31. {jinns-1.0.0 → jinns-1.1.0}/tests/runtests.sh +6 -0
  32. {jinns-1.0.0 → jinns-1.1.0}/tests/sharding_tests/test_Burger_x32_multiple_shardings_eqx.py +2 -0
  33. {jinns-1.0.0 → jinns-1.1.0}/tests/solver_tests/test_Burger_x32_eqx.py +1 -0
  34. {jinns-1.0.0 → jinns-1.1.0}/tests/solver_tests/test_Burger_x64_eqx.py +1 -0
  35. {jinns-1.0.0 → jinns-1.1.0}/tests/solver_tests/test_Fisher_x32_eqx.py +1 -0
  36. {jinns-1.0.0 → jinns-1.1.0}/tests/solver_tests/test_Fisher_x64_eqx.py +1 -0
  37. {jinns-1.0.0 → jinns-1.1.0}/tests/solver_tests/test_GLV_x32_eqx.py +1 -0
  38. {jinns-1.0.0 → jinns-1.1.0}/tests/solver_tests/test_GLV_x64_eqx.py +1 -0
  39. {jinns-1.0.0 → jinns-1.1.0}/tests/solver_tests/test_NSPipeFlow_x32_eqx.py +1 -0
  40. {jinns-1.0.0 → jinns-1.1.0}/tests/solver_tests/test_NSPipeFlow_x64_eqx.py +1 -0
  41. {jinns-1.0.0 → jinns-1.1.0}/tests/solver_tests/test_OU2D_x32_eqx.py +1 -0
  42. {jinns-1.0.0 → jinns-1.1.0}/tests/solver_tests/test_nan_params_catch.py +1 -0
  43. {jinns-1.0.0 → jinns-1.1.0}/tests/solver_tests/test_parameter_tracker.py +1 -0
  44. {jinns-1.0.0 → jinns-1.1.0}/tests/solver_tests/test_rar_algorithm.py +1 -0
  45. {jinns-1.0.0 → jinns-1.1.0}/tests/solver_tests_hyperpinn/test_NSPipeFlow_x32_eqx.py +1 -0
  46. {jinns-1.0.0 → jinns-1.1.0}/tests/solver_tests_spinn/test_Burger_x32_eqx.py +1 -0
  47. {jinns-1.0.0 → jinns-1.1.0}/tests/solver_tests_spinn/test_Fisher_x32_eqx.py +1 -0
  48. {jinns-1.0.0 → jinns-1.1.0}/tests/solver_tests_spinn/test_NSPipeFlow_x32_spinn_eqx.py +1 -0
  49. {jinns-1.0.0 → jinns-1.1.0}/tests/solver_tests_spinn/test_OU2D_x32_eqx.py +1 -0
  50. {jinns-1.0.0 → jinns-1.1.0}/tests/solver_tests_spinn/test_ReactionDiffusion_nonhomo_x64_eqx.py +1 -0
  51. jinns-1.0.0/Notebooks/ODE/systems_biology_informed_neural_network.ipynb +0 -1104
  52. jinns-1.0.0/Notebooks/PDE/Reaction_Diffusion_2D_heterogenous_model.ipynb +0 -1884
  53. jinns-1.0.0/jinns/parameters/_derivative_keys.py +0 -94
  54. {jinns-1.0.0 → jinns-1.1.0}/.gitignore +0 -0
  55. {jinns-1.0.0 → jinns-1.1.0}/.gitlab-ci.yml +0 -0
  56. {jinns-1.0.0 → jinns-1.1.0}/.pre-commit-config.yaml +0 -0
  57. {jinns-1.0.0 → jinns-1.1.0}/LICENSE +0 -0
  58. {jinns-1.0.0 → jinns-1.1.0}/Notebooks/ODE/sbinn_data/glucose.dat +0 -0
  59. {jinns-1.0.0 → jinns-1.1.0}/Notebooks/ODE/sbinn_data/meal.dat +0 -0
  60. {jinns-1.0.0 → jinns-1.1.0}/Notebooks/PDE/2d_nonstatio_ou_standardsampling.png +0 -0
  61. {jinns-1.0.0 → jinns-1.1.0}/Notebooks/PDE/OU_1D_nonstatio_solution_grid.npy +0 -0
  62. {jinns-1.0.0/Notebooks/PDE → jinns-1.1.0/Notebooks/Tutorials}/burger_solution_grid.npy +0 -0
  63. {jinns-1.0.0 → jinns-1.1.0}/Notebooks/Tutorials/load_save_model.ipynb +0 -0
  64. {jinns-1.0.0 → jinns-1.1.0}/README.md +0 -0
  65. {jinns-1.0.0 → jinns-1.1.0}/docs/README.md +0 -0
  66. {jinns-1.0.0 → jinns-1.1.0}/docs/_static/custom_css.css +0 -0
  67. {jinns-1.0.0 → jinns-1.1.0}/docs/_static/favicon.png +0 -0
  68. {jinns-1.0.0 → jinns-1.1.0}/docs/api/advanced/derivative_keys.md +0 -0
  69. {jinns-1.0.0 → jinns-1.1.0}/docs/api/advanced/differential_operators.md +0 -0
  70. {jinns-1.0.0 → jinns-1.1.0}/docs/api/loss/loss_xde.md +0 -0
  71. {jinns-1.0.0 → jinns-1.1.0}/docs/api/loss/systems_of_xde.md +0 -0
  72. {jinns-1.0.0 → jinns-1.1.0}/docs/api/pinn/hyperpinn.md +0 -0
  73. {jinns-1.0.0 → jinns-1.1.0}/docs/api/pinn/pinn.md +0 -0
  74. {jinns-1.0.0 → jinns-1.1.0}/docs/api/pinn/save_load.md +0 -0
  75. {jinns-1.0.0 → jinns-1.1.0}/docs/api/pinn/spinn.md +0 -0
  76. {jinns-1.0.0 → jinns-1.1.0}/docs/api/plot.md +0 -0
  77. {jinns-1.0.0 → jinns-1.1.0}/docs/doc_requirements.txt +0 -0
  78. {jinns-1.0.0 → jinns-1.1.0}/docs/index.md +0 -0
  79. {jinns-1.0.0 → jinns-1.1.0}/docs/javascripts/katex.js +0 -0
  80. {jinns-1.0.0 → jinns-1.1.0}/docs/maths/fokker_planck.md +0 -0
  81. {jinns-1.0.0 → jinns-1.1.0}/docs/maths/introduction_to_pinns.md +0 -0
  82. {jinns-1.0.0 → jinns-1.1.0}/jinns/__init__.py +0 -0
  83. {jinns-1.0.0 → jinns-1.1.0}/jinns/data/_Batchs.py +0 -0
  84. {jinns-1.0.0 → jinns-1.1.0}/jinns/data/_DataGenerators.py +0 -0
  85. {jinns-1.0.0 → jinns-1.1.0}/jinns/data/__init__.py +0 -0
  86. {jinns-1.0.0 → jinns-1.1.0}/jinns/experimental/__init__.py +0 -0
  87. {jinns-1.0.0 → jinns-1.1.0}/jinns/experimental/_diffrax_solver.py +0 -0
  88. {jinns-1.0.0 → jinns-1.1.0}/jinns/loss/_DynamicLoss.py +0 -0
  89. {jinns-1.0.0 → jinns-1.1.0}/jinns/loss/__init__.py +0 -0
  90. {jinns-1.0.0 → jinns-1.1.0}/jinns/loss/_boundary_conditions.py +0 -0
  91. {jinns-1.0.0 → jinns-1.1.0}/jinns/loss/_loss_weights.py +0 -0
  92. {jinns-1.0.0 → jinns-1.1.0}/jinns/loss/_operators.py +0 -0
  93. {jinns-1.0.0 → jinns-1.1.0}/jinns/parameters/__init__.py +0 -0
  94. {jinns-1.0.0 → jinns-1.1.0}/jinns/parameters/_params.py +0 -0
  95. {jinns-1.0.0 → jinns-1.1.0}/jinns/plot/__init__.py +0 -0
  96. {jinns-1.0.0 → jinns-1.1.0}/jinns/plot/_plot.py +0 -0
  97. {jinns-1.0.0 → jinns-1.1.0}/jinns/solver/__init__.py +0 -0
  98. {jinns-1.0.0 → jinns-1.1.0}/jinns/solver/_rar.py +0 -0
  99. {jinns-1.0.0 → jinns-1.1.0}/jinns/solver/_solve.py +0 -0
  100. {jinns-1.0.0 → jinns-1.1.0}/jinns/utils/__init__.py +0 -0
  101. {jinns-1.0.0 → jinns-1.1.0}/jinns/utils/_containers.py +0 -0
  102. {jinns-1.0.0 → jinns-1.1.0}/jinns/utils/_hyperpinn.py +0 -0
  103. {jinns-1.0.0 → jinns-1.1.0}/jinns/utils/_pinn.py +0 -0
  104. {jinns-1.0.0 → jinns-1.1.0}/jinns/utils/_save_load.py +0 -0
  105. {jinns-1.0.0 → jinns-1.1.0}/jinns/utils/_spinn.py +0 -0
  106. {jinns-1.0.0 → jinns-1.1.0}/jinns/utils/_types.py +0 -0
  107. {jinns-1.0.0 → jinns-1.1.0}/jinns/utils/_utils.py +0 -0
  108. {jinns-1.0.0 → jinns-1.1.0}/jinns/validation/__init__.py +0 -0
  109. {jinns-1.0.0 → jinns-1.1.0}/jinns/validation/_validation.py +0 -0
  110. {jinns-1.0.0 → jinns-1.1.0}/jinns.egg-info/dependency_links.txt +0 -0
  111. {jinns-1.0.0 → jinns-1.1.0}/jinns.egg-info/requires.txt +0 -0
  112. {jinns-1.0.0 → jinns-1.1.0}/jinns.egg-info/top_level.txt +0 -0
  113. {jinns-1.0.0 → jinns-1.1.0}/pyproject.toml +0 -0
  114. {jinns-1.0.0 → jinns-1.1.0}/setup.cfg +0 -0
  115. {jinns-1.0.0 → jinns-1.1.0}/tests/conftest.py +0 -0
  116. {jinns-1.0.0 → jinns-1.1.0}/tests/dataGenerator_tests/test_CubicMeshPDENonStatio_eqx.py +0 -0
  117. {jinns-1.0.0 → jinns-1.1.0}/tests/dataGenerator_tests/test_CubicMeshPDEStatio_eqx.py +0 -0
  118. {jinns-1.0.0 → jinns-1.1.0}/tests/dataGenerator_tests/test_DataGeneratorODE_eqx.py +0 -0
  119. {jinns-1.0.0 → jinns-1.1.0}/tests/dataGenerator_tests/test_DataGeneratorParameter_eqx.py +0 -0
  120. {jinns-1.0.0 → jinns-1.1.0}/tests/save_load_tests/test_saving_loading_hyperpinn.py +0 -0
  121. {jinns-1.0.0 → jinns-1.1.0}/tests/save_load_tests/test_saving_loading_pinn.py +0 -0
  122. {jinns-1.0.0 → jinns-1.1.0}/tests/save_load_tests/test_saving_loading_spinn.py +0 -0
  123. {jinns-1.0.0 → jinns-1.1.0}/tests/utils_tests/test_hyperpinns.py +0 -0
  124. {jinns-1.0.0 → jinns-1.1.0}/tests/utils_tests/test_pinn.py +0 -0
  125. {jinns-1.0.0 → jinns-1.1.0}/tests/utils_tests/test_spinn.py +0 -0
jinns-1.1.0/AUTHORS ADDED
@@ -0,0 +1,2 @@
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+ Hugo Gangloff <hugo.gangloff@inrae.fr>
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+ Nicolas Jouvin <nicolas.jouvin@inrae.fr>
{jinns-1.0.0 → jinns-1.1.0}/Notebooks/ODE/1D_Generalized_Lotka_Volterra.ipynb RENAMED
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  " \"1\": (float(tmin), N_0[1]),\n",
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  " \"2\": (float(tmin), N_0[2]),\n",
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  " },\n",
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+ " params_dict=init_params\n",
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  ")"
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  ]
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  },
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  "nbconvert_exporter": "python",
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  "pygments_lexer": "ipython3",
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- "version": "3.11.7"
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+ "version": "3.11.2"
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  },
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  "vscode": {
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  "interpreter": {
{jinns-1.0.0 → jinns-1.1.0}/Notebooks/ODE/linear_fo_equation.ipynb RENAMED
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  " loss_weights=loss_weights,\n",
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  " dynamic_loss=fo_loss,\n",
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  " initial_condition=(float(tmin), jnp.log(u0)),\n",
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+ " params=init_params\n",
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  ")"
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  ]
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  },
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  "name": "python",
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  "pygments_lexer": "ipython3",
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- "version": "3.11.7"
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+ "version": "3.11.2"
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  },
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  "vscode": {
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  "interpreter": {