jinns 0.9.0__tar.gz → 1.1.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (182) hide show
  1. {jinns-0.9.0 → jinns-1.1.0}/.gitignore +3 -0
  2. {jinns-0.9.0 → jinns-1.1.0}/.gitlab-ci.yml +7 -8
  3. jinns-1.1.0/AUTHORS +2 -0
  4. jinns-1.1.0/Notebooks/ODE/1D_Generalized_Lotka_Volterra.ipynb +813 -0
  5. jinns-1.1.0/Notebooks/ODE/linear_fo_equation.ipynb +581 -0
  6. jinns-1.1.0/Notebooks/ODE/systems_biology_informed_neural_network.ipynb +1034 -0
  7. jinns-1.1.0/Notebooks/PDE/1D_non_stationary_Burger.ipynb +814 -0
  8. jinns-1.1.0/Notebooks/PDE/1D_non_stationary_Fisher_KPP_Bounded_Domain.ipynb +883 -0
  9. jinns-1.1.0/Notebooks/PDE/2D_Heat_inverse_problem.ipynb +923 -0
  10. {jinns-0.9.0 → jinns-1.1.0}/Notebooks/PDE/2D_Navier_Stokes_PipeFlow.ipynb +113 -145
  11. jinns-1.1.0/Notebooks/PDE/2D_Navier_Stokes_PipeFlow_Metamodel_hyperpinn.ipynb +1432 -0
  12. jinns-1.1.0/Notebooks/PDE/2D_Navier_Stokes_PipeFlow_SoftConstraints.ipynb +1226 -0
  13. jinns-1.1.0/Notebooks/PDE/2D_Poisson_inverse_problem.ipynb +750 -0
  14. jinns-1.1.0/Notebooks/PDE/2D_non_stationary_OU.ipynb +1163 -0
  15. jinns-1.1.0/Notebooks/PDE/Reaction_Diffusion_2D_heterogenous_model.ipynb +1890 -0
  16. jinns-1.1.0/Notebooks/PDE/Reaction_Diffusion_2D_homogeneous_metamodel_hyperpinn_diffrax.ipynb +1002 -0
  17. jinns-1.1.0/Notebooks/Tutorials/1D_non_stationary_Burger_JointEstimation_Vanilla.ipynb +827 -0
  18. jinns-1.1.0/Notebooks/Tutorials/implementing_your_own_PDE_problem.ipynb +699 -0
  19. jinns-1.1.0/Notebooks/Tutorials/introducing_validation_loss.ipynb +694 -0
  20. jinns-1.1.0/Notebooks/Tutorials/load_save_model.ipynb +538 -0
  21. {jinns-0.9.0 → jinns-1.1.0}/PKG-INFO +5 -4
  22. jinns-1.1.0/codemeta.json +60 -0
  23. jinns-1.1.0/docs/README.md +8 -0
  24. jinns-1.1.0/docs/_static/custom_css.css +169 -0
  25. jinns-1.1.0/docs/_static/favicon.png +0 -0
  26. jinns-1.1.0/docs/api/advanced/derivative_keys.md +7 -0
  27. jinns-1.1.0/docs/api/advanced/differential_operators.md +22 -0
  28. jinns-1.1.0/docs/api/loss/dynamic_loss.md +60 -0
  29. jinns-1.1.0/docs/api/loss/loss_xde.md +17 -0
  30. jinns-1.1.0/docs/api/loss/systems_of_xde.md +13 -0
  31. jinns-1.1.0/docs/api/pinn/hyperpinn.md +5 -0
  32. jinns-1.1.0/docs/api/pinn/pinn.md +5 -0
  33. jinns-1.1.0/docs/api/pinn/save_load.md +5 -0
  34. jinns-1.1.0/docs/api/pinn/spinn.md +5 -0
  35. jinns-1.1.0/docs/api/plot.md +18 -0
  36. jinns-0.9.0/doc/source/index.rst → jinns-1.1.0/docs/changelog.md +16 -52
  37. jinns-1.1.0/docs/doc_requirements.txt +6 -0
  38. jinns-1.1.0/docs/index.md +29 -0
  39. jinns-1.1.0/docs/javascripts/katex.js +10 -0
  40. jinns-0.9.0/doc/source/fokker_planck.qmd → jinns-1.1.0/docs/maths/fokker_planck.md +15 -19
  41. jinns-1.1.0/docs/maths/introduction_to_pinns.md +79 -0
  42. {jinns-0.9.0 → jinns-1.1.0}/jinns/__init__.py +2 -0
  43. jinns-1.1.0/jinns/data/_Batchs.py +27 -0
  44. jinns-1.1.0/jinns/data/_DataGenerators.py +1443 -0
  45. {jinns-0.9.0 → jinns-1.1.0}/jinns/data/__init__.py +4 -8
  46. {jinns-0.9.0 → jinns-1.1.0}/jinns/experimental/__init__.py +0 -2
  47. {jinns-0.9.0 → jinns-1.1.0}/jinns/experimental/_diffrax_solver.py +5 -5
  48. {jinns-0.9.0 → jinns-1.1.0}/jinns/loss/_DynamicLoss.py +282 -305
  49. jinns-1.1.0/jinns/loss/_DynamicLossAbstract.py +375 -0
  50. jinns-1.1.0/jinns/loss/_LossODE.py +568 -0
  51. jinns-1.1.0/jinns/loss/_LossPDE.py +1100 -0
  52. jinns-1.1.0/jinns/loss/__init__.py +27 -0
  53. {jinns-0.9.0 → jinns-1.1.0}/jinns/loss/_boundary_conditions.py +87 -41
  54. jinns-0.9.0/jinns/loss/_Losses.py → jinns-1.1.0/jinns/loss/_loss_utils.py +101 -45
  55. jinns-1.1.0/jinns/loss/_loss_weights.py +59 -0
  56. {jinns-0.9.0 → jinns-1.1.0}/jinns/loss/_operators.py +78 -72
  57. jinns-1.1.0/jinns/parameters/__init__.py +6 -0
  58. jinns-1.1.0/jinns/parameters/_derivative_keys.py +521 -0
  59. jinns-1.1.0/jinns/parameters/_params.py +115 -0
  60. jinns-1.1.0/jinns/plot/__init__.py +5 -0
  61. jinns-0.9.0/jinns/data/_display.py → jinns-1.1.0/jinns/plot/_plot.py +98 -75
  62. {jinns-0.9.0 → jinns-1.1.0}/jinns/solver/_rar.py +183 -39
  63. {jinns-0.9.0 → jinns-1.1.0}/jinns/solver/_solve.py +151 -124
  64. jinns-1.1.0/jinns/utils/__init__.py +4 -0
  65. jinns-1.1.0/jinns/utils/_containers.py +51 -0
  66. jinns-1.1.0/jinns/utils/_hyperpinn.py +410 -0
  67. jinns-1.1.0/jinns/utils/_pinn.py +334 -0
  68. jinns-1.1.0/jinns/utils/_save_load.py +240 -0
  69. {jinns-0.9.0 → jinns-1.1.0}/jinns/utils/_spinn.py +113 -86
  70. jinns-1.1.0/jinns/utils/_types.py +64 -0
  71. jinns-1.1.0/jinns/utils/_utils.py +68 -0
  72. jinns-1.1.0/jinns/validation/_validation.py +122 -0
  73. {jinns-0.9.0 → jinns-1.1.0}/jinns.egg-info/PKG-INFO +5 -4
  74. {jinns-0.9.0 → jinns-1.1.0}/jinns.egg-info/SOURCES.txt +58 -54
  75. {jinns-0.9.0 → jinns-1.1.0}/jinns.egg-info/requires.txt +2 -2
  76. jinns-1.1.0/mkdocs.yml +135 -0
  77. {jinns-0.9.0 → jinns-1.1.0}/pyproject.toml +3 -3
  78. jinns-0.9.0/tests/dataGenerator_tests/test_CubicMeshPDENonStatio.py → jinns-1.1.0/tests/dataGenerator_tests/test_CubicMeshPDENonStatio_eqx.py +26 -26
  79. jinns-0.9.0/tests/dataGenerator_tests/test_CubicMeshPDEStatio.py → jinns-1.1.0/tests/dataGenerator_tests/test_CubicMeshPDEStatio_eqx.py +18 -18
  80. jinns-0.9.0/tests/dataGenerator_tests/test_DataGeneratorODE.py → jinns-1.1.0/tests/dataGenerator_tests/test_DataGeneratorODE_eqx.py +1 -1
  81. jinns-0.9.0/tests/dataGenerator_tests/test_DataGeneratorParameter.py → jinns-1.1.0/tests/dataGenerator_tests/test_DataGeneratorParameter_eqx.py +2 -2
  82. jinns-1.1.0/tests/parameters_tests/test_DerivativeKeysODE.py +284 -0
  83. jinns-1.1.0/tests/runtests.sh +40 -0
  84. {jinns-0.9.0 → jinns-1.1.0}/tests/save_load_tests/test_saving_loading_hyperpinn.py +49 -40
  85. jinns-1.1.0/tests/save_load_tests/test_saving_loading_pinn.py +174 -0
  86. {jinns-0.9.0 → jinns-1.1.0}/tests/save_load_tests/test_saving_loading_spinn.py +10 -10
  87. jinns-0.9.0/tests/sharding_tests/test_Burger_x32_multiple_shardings.py → jinns-1.1.0/tests/sharding_tests/test_Burger_x32_multiple_shardings_eqx.py +117 -41
  88. jinns-1.1.0/tests/solver_tests/test_Burger_x32_eqx.py +149 -0
  89. jinns-1.1.0/tests/solver_tests/test_Burger_x64_eqx.py +149 -0
  90. jinns-0.9.0/tests/solver_tests/test_Fisher_x32.py → jinns-1.1.0/tests/solver_tests/test_Fisher_x32_eqx.py +71 -43
  91. jinns-0.9.0/tests/solver_tests/test_Fisher_x64.py → jinns-1.1.0/tests/solver_tests/test_Fisher_x64_eqx.py +70 -41
  92. jinns-0.9.0/tests/solver_tests/test_GLV_x32.py → jinns-1.1.0/tests/solver_tests/test_GLV_x32_eqx.py +36 -24
  93. jinns-0.9.0/tests/solver_tests/test_GLV_x64.py → jinns-1.1.0/tests/solver_tests/test_GLV_x64_eqx.py +34 -24
  94. jinns-0.9.0/tests/solver_tests/test_NSPipeFlow_x32.py → jinns-1.1.0/tests/solver_tests/test_NSPipeFlow_x32_eqx.py +46 -45
  95. jinns-0.9.0/tests/solver_tests/test_NSPipeFlow_x64.py → jinns-1.1.0/tests/solver_tests/test_NSPipeFlow_x64_eqx.py +44 -43
  96. jinns-0.9.0/tests/solver_tests/test_OU2D_x32.py → jinns-1.1.0/tests/solver_tests/test_OU2D_x32_eqx.py +67 -34
  97. jinns-1.1.0/tests/solver_tests/test_nan_params_catch.py +115 -0
  98. jinns-1.1.0/tests/solver_tests/test_parameter_tracker.py +146 -0
  99. {jinns-0.9.0 → jinns-1.1.0}/tests/solver_tests/test_rar_algorithm.py +33 -28
  100. jinns-1.1.0/tests/solver_tests_hyperpinn/test_NSPipeFlow_x32_eqx.py +170 -0
  101. jinns-1.1.0/tests/solver_tests_spinn/test_Burger_x32_eqx.py +153 -0
  102. jinns-0.9.0/tests/solver_tests_spinn/test_Fisher_x32.py → jinns-1.1.0/tests/solver_tests_spinn/test_Fisher_x32_eqx.py +69 -39
  103. jinns-0.9.0/tests/solver_tests_spinn/test_NSPipeFlow_x32_spinn.py → jinns-1.1.0/tests/solver_tests_spinn/test_NSPipeFlow_x32_spinn_eqx.py +35 -34
  104. jinns-0.9.0/tests/solver_tests_spinn/test_OU2D_x32.py → jinns-1.1.0/tests/solver_tests_spinn/test_OU2D_x32_eqx.py +62 -40
  105. jinns-0.9.0/tests/solver_tests_spinn/test_ReactionDiffusion_nonhomo_x64.py → jinns-1.1.0/tests/solver_tests_spinn/test_ReactionDiffusion_nonhomo_x64_eqx.py +77 -38
  106. {jinns-0.9.0 → jinns-1.1.0}/tests/utils_tests/test_hyperpinns.py +19 -19
  107. {jinns-0.9.0 → jinns-1.1.0}/tests/utils_tests/test_pinn.py +20 -20
  108. {jinns-0.9.0 → jinns-1.1.0}/tests/utils_tests/test_spinn.py +9 -9
  109. jinns-0.9.0/Notebooks/ODE/1D_Generalized_Lotka_Volterra.ipynb +0 -742
  110. jinns-0.9.0/Notebooks/ODE/1D_Generalized_Lotka_Volterra_seq2seq.ipynb +0 -846
  111. jinns-0.9.0/Notebooks/ODE/systems_biology_informed_neural_network.ipynb +0 -993
  112. jinns-0.9.0/Notebooks/PDE/1D_non_stationary_Burger.ipynb +0 -824
  113. jinns-0.9.0/Notebooks/PDE/1D_non_stationary_Fisher_KPP_Bounded_Domain.ipynb +0 -860
  114. jinns-0.9.0/Notebooks/PDE/2D_Heat_inverse_problem.ipynb +0 -856
  115. jinns-0.9.0/Notebooks/PDE/2D_Navier_Stokes_PipeFlow_Metamodel_hyperpinn.ipynb +0 -1285
  116. jinns-0.9.0/Notebooks/PDE/2D_Navier_Stokes_PipeFlow_SoftConstraints.ipynb +0 -1188
  117. jinns-0.9.0/Notebooks/PDE/2D_Poisson_inverse_problem.ipynb +0 -766
  118. jinns-0.9.0/Notebooks/PDE/2D_non_stationary_OU.ipynb +0 -1177
  119. jinns-0.9.0/Notebooks/PDE/Reaction_Diffusion_2D_heterogenous_model.ipynb +0 -1767
  120. jinns-0.9.0/Notebooks/PDE/Reaction_Diffusion_2D_homogeneous_metamodel_hyperpinn_diffrax.ipynb +0 -1005
  121. jinns-0.9.0/Notebooks/PDE/imperfect_modeling_sobolev_reg.ipynb +0 -1083
  122. jinns-0.9.0/Notebooks/SPDE/SpectralPINN_SPDE_Matern_finite_diff.ipynb +0 -1667
  123. jinns-0.9.0/Notebooks/Tutorials/implementing_your_own_PDE_problem.ipynb +0 -749
  124. jinns-0.9.0/Notebooks/Tutorials/introducing_validation_loss.ipynb +0 -668
  125. jinns-0.9.0/Notebooks/Tutorials/load_save_model.ipynb +0 -316
  126. jinns-0.9.0/doc/Makefile +0 -20
  127. jinns-0.9.0/doc/source/boundary_conditions.rst +0 -7
  128. jinns-0.9.0/doc/source/conf.py +0 -33
  129. jinns-0.9.0/doc/source/data.rst +0 -11
  130. jinns-0.9.0/doc/source/dynamic_loss.rst +0 -20
  131. jinns-0.9.0/doc/source/experimental.rst +0 -11
  132. jinns-0.9.0/doc/source/loss.rst +0 -30
  133. jinns-0.9.0/doc/source/loss_ode.rst +0 -10
  134. jinns-0.9.0/doc/source/loss_pde.rst +0 -10
  135. jinns-0.9.0/doc/source/losses.rst +0 -10
  136. jinns-0.9.0/doc/source/math_pinn.qmd +0 -52
  137. jinns-0.9.0/doc/source/operators.rst +0 -7
  138. jinns-0.9.0/doc/source/param_estim_pinn.qmd +0 -55
  139. jinns-0.9.0/doc/source/rar.rst +0 -8
  140. jinns-0.9.0/doc/source/seq2seq.rst +0 -8
  141. jinns-0.9.0/doc/source/solve.rst +0 -6
  142. jinns-0.9.0/doc/source/solver.rst +0 -20
  143. jinns-0.9.0/doc/source/utils.rst +0 -11
  144. jinns-0.9.0/doc/source/validation.rst +0 -31
  145. jinns-0.9.0/jinns/data/_DataGenerators.py +0 -1742
  146. jinns-0.9.0/jinns/experimental/_sinuspinn.py +0 -135
  147. jinns-0.9.0/jinns/experimental/_spectralpinn.py +0 -87
  148. jinns-0.9.0/jinns/loss/_DynamicLossAbstract.py +0 -220
  149. jinns-0.9.0/jinns/loss/_LossODE.py +0 -566
  150. jinns-0.9.0/jinns/loss/_LossPDE.py +0 -1475
  151. jinns-0.9.0/jinns/loss/__init__.py +0 -11
  152. jinns-0.9.0/jinns/solver/_seq2seq.py +0 -157
  153. jinns-0.9.0/jinns/utils/__init__.py +0 -10
  154. jinns-0.9.0/jinns/utils/_containers.py +0 -58
  155. jinns-0.9.0/jinns/utils/_hyperpinn.py +0 -305
  156. jinns-0.9.0/jinns/utils/_optim.py +0 -147
  157. jinns-0.9.0/jinns/utils/_pinn.py +0 -262
  158. jinns-0.9.0/jinns/utils/_save_load.py +0 -175
  159. jinns-0.9.0/jinns/utils/_utils.py +0 -222
  160. jinns-0.9.0/jinns/utils/_utils_uspinn.py +0 -727
  161. jinns-0.9.0/jinns/validation/_validation.py +0 -214
  162. jinns-0.9.0/tests/runtests.sh +0 -28
  163. jinns-0.9.0/tests/save_load_tests/test_saving_loading_pinn.py +0 -78
  164. jinns-0.9.0/tests/sharding_tests/test_imperfect_sobolev_x32_multiple_shardings.py +0 -333
  165. jinns-0.9.0/tests/solver_tests/test_Burger_x32.py +0 -112
  166. jinns-0.9.0/tests/solver_tests/test_Burger_x64.py +0 -111
  167. jinns-0.9.0/tests/solver_tests/test_imperfect_sobolev_x32.py +0 -175
  168. jinns-0.9.0/tests/solver_tests_spinn/test_Burger_x32.py +0 -115
  169. {jinns-0.9.0 → jinns-1.1.0}/.pre-commit-config.yaml +0 -0
  170. {jinns-0.9.0 → jinns-1.1.0}/LICENSE +0 -0
  171. {jinns-0.9.0 → jinns-1.1.0}/Notebooks/ODE/sbinn_data/glucose.dat +0 -0
  172. {jinns-0.9.0 → jinns-1.1.0}/Notebooks/ODE/sbinn_data/meal.dat +0 -0
  173. {jinns-0.9.0 → jinns-1.1.0}/Notebooks/PDE/2d_nonstatio_ou_standardsampling.png +0 -0
  174. {jinns-0.9.0 → jinns-1.1.0}/Notebooks/PDE/OU_1D_nonstatio_solution_grid.npy +0 -0
  175. {jinns-0.9.0/Notebooks/PDE → jinns-1.1.0/Notebooks/Tutorials}/burger_solution_grid.npy +0 -0
  176. {jinns-0.9.0 → jinns-1.1.0}/README.md +0 -0
  177. {jinns-0.9.0 → jinns-1.1.0}/jinns/solver/__init__.py +0 -0
  178. {jinns-0.9.0 → jinns-1.1.0}/jinns/validation/__init__.py +0 -0
  179. {jinns-0.9.0 → jinns-1.1.0}/jinns.egg-info/dependency_links.txt +0 -0
  180. {jinns-0.9.0 → jinns-1.1.0}/jinns.egg-info/top_level.txt +0 -0
  181. {jinns-0.9.0 → jinns-1.1.0}/setup.cfg +0 -0
  182. {jinns-0.9.0 → jinns-1.1.0}/tests/conftest.py +0 -0
{jinns-0.9.0 → jinns-1.1.0}/.gitignore RENAMED
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+ # MkDocs build
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{jinns-0.9.0 → jinns-1.1.0}/.gitlab-ci.yml RENAMED
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- - pip install --break-system-packages sphinx sphinx_rtd_theme
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+ - mkdocs build
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jinns-1.1.0/AUTHORS ADDED
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+ Hugo Gangloff <hugo.gangloff@inrae.fr>
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+ Nicolas Jouvin <nicolas.jouvin@inrae.fr>