jinns 0.8.10__tar.gz → 1.0.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (178) hide show
  1. {jinns-0.8.10 → jinns-1.0.0}/.gitignore +3 -0
  2. {jinns-0.8.10 → jinns-1.0.0}/.gitlab-ci.yml +7 -8
  3. jinns-1.0.0/Notebooks/ODE/1D_Generalized_Lotka_Volterra.ipynb +812 -0
  4. jinns-1.0.0/Notebooks/ODE/linear_fo_equation.ipynb +580 -0
  5. {jinns-0.8.10 → jinns-1.0.0}/Notebooks/ODE/systems_biology_informed_neural_network.ipynb +301 -190
  6. jinns-1.0.0/Notebooks/PDE/1D_non_stationary_Burger.ipynb +812 -0
  7. jinns-1.0.0/Notebooks/PDE/1D_non_stationary_Fisher_KPP_Bounded_Domain.ipynb +881 -0
  8. jinns-1.0.0/Notebooks/PDE/2D_Heat_inverse_problem.ipynb +922 -0
  9. {jinns-0.8.10 → jinns-1.0.0}/Notebooks/PDE/2D_Navier_Stokes_PipeFlow.ipynb +112 -145
  10. jinns-1.0.0/Notebooks/PDE/2D_Navier_Stokes_PipeFlow_Metamodel_hyperpinn.ipynb +1431 -0
  11. jinns-1.0.0/Notebooks/PDE/2D_Navier_Stokes_PipeFlow_SoftConstraints.ipynb +1225 -0
  12. jinns-1.0.0/Notebooks/PDE/2D_Poisson_inverse_problem.ipynb +749 -0
  13. jinns-1.0.0/Notebooks/PDE/2D_non_stationary_OU.ipynb +1162 -0
  14. jinns-1.0.0/Notebooks/PDE/Reaction_Diffusion_2D_heterogenous_model.ipynb +1884 -0
  15. jinns-1.0.0/Notebooks/PDE/Reaction_Diffusion_2D_homogeneous_metamodel_hyperpinn_diffrax.ipynb +1001 -0
  16. jinns-1.0.0/Notebooks/Tutorials/implementing_your_own_PDE_problem.ipynb +692 -0
  17. jinns-1.0.0/Notebooks/Tutorials/introducing_validation_loss.ipynb +701 -0
  18. jinns-1.0.0/Notebooks/Tutorials/load_save_model.ipynb +538 -0
  19. {jinns-0.8.10 → jinns-1.0.0}/PKG-INFO +5 -4
  20. jinns-1.0.0/docs/README.md +8 -0
  21. jinns-1.0.0/docs/_static/custom_css.css +169 -0
  22. jinns-1.0.0/docs/_static/favicon.png +0 -0
  23. jinns-1.0.0/docs/api/advanced/derivative_keys.md +7 -0
  24. jinns-1.0.0/docs/api/advanced/differential_operators.md +22 -0
  25. jinns-1.0.0/docs/api/loss/dynamic_loss.md +54 -0
  26. jinns-1.0.0/docs/api/loss/loss_xde.md +17 -0
  27. jinns-1.0.0/docs/api/loss/systems_of_xde.md +13 -0
  28. jinns-1.0.0/docs/api/pinn/hyperpinn.md +5 -0
  29. jinns-1.0.0/docs/api/pinn/pinn.md +5 -0
  30. jinns-1.0.0/docs/api/pinn/save_load.md +5 -0
  31. jinns-1.0.0/docs/api/pinn/spinn.md +5 -0
  32. jinns-1.0.0/docs/api/plot.md +18 -0
  33. jinns-0.8.10/doc/source/index.rst → jinns-1.0.0/docs/changelog.md +18 -51
  34. jinns-1.0.0/docs/doc_requirements.txt +6 -0
  35. jinns-1.0.0/docs/index.md +29 -0
  36. jinns-1.0.0/docs/javascripts/katex.js +10 -0
  37. jinns-0.8.10/doc/source/fokker_planck.qmd → jinns-1.0.0/docs/maths/fokker_planck.md +15 -19
  38. jinns-1.0.0/docs/maths/introduction_to_pinns.md +79 -0
  39. {jinns-0.8.10 → jinns-1.0.0}/jinns/__init__.py +2 -0
  40. jinns-1.0.0/jinns/data/_Batchs.py +27 -0
  41. jinns-1.0.0/jinns/data/_DataGenerators.py +1443 -0
  42. {jinns-0.8.10 → jinns-1.0.0}/jinns/data/__init__.py +4 -8
  43. {jinns-0.8.10 → jinns-1.0.0}/jinns/experimental/__init__.py +0 -2
  44. {jinns-0.8.10 → jinns-1.0.0}/jinns/experimental/_diffrax_solver.py +5 -5
  45. {jinns-0.8.10 → jinns-1.0.0}/jinns/loss/_DynamicLoss.py +282 -305
  46. jinns-1.0.0/jinns/loss/_DynamicLossAbstract.py +373 -0
  47. jinns-1.0.0/jinns/loss/_LossODE.py +549 -0
  48. jinns-1.0.0/jinns/loss/_LossPDE.py +1090 -0
  49. jinns-1.0.0/jinns/loss/__init__.py +27 -0
  50. {jinns-0.8.10 → jinns-1.0.0}/jinns/loss/_boundary_conditions.py +95 -96
  51. jinns-0.8.10/jinns/loss/_Losses.py → jinns-1.0.0/jinns/loss/_loss_utils.py +104 -46
  52. jinns-1.0.0/jinns/loss/_loss_weights.py +59 -0
  53. {jinns-0.8.10 → jinns-1.0.0}/jinns/loss/_operators.py +78 -72
  54. jinns-1.0.0/jinns/parameters/__init__.py +6 -0
  55. jinns-1.0.0/jinns/parameters/_derivative_keys.py +94 -0
  56. jinns-1.0.0/jinns/parameters/_params.py +115 -0
  57. jinns-1.0.0/jinns/plot/__init__.py +5 -0
  58. jinns-0.8.10/jinns/data/_display.py → jinns-1.0.0/jinns/plot/_plot.py +98 -75
  59. {jinns-0.8.10 → jinns-1.0.0}/jinns/solver/_rar.py +193 -45
  60. {jinns-0.8.10 → jinns-1.0.0}/jinns/solver/_solve.py +199 -144
  61. jinns-1.0.0/jinns/utils/__init__.py +4 -0
  62. jinns-1.0.0/jinns/utils/_containers.py +51 -0
  63. jinns-1.0.0/jinns/utils/_hyperpinn.py +410 -0
  64. jinns-1.0.0/jinns/utils/_pinn.py +334 -0
  65. jinns-1.0.0/jinns/utils/_save_load.py +240 -0
  66. jinns-1.0.0/jinns/utils/_spinn.py +268 -0
  67. jinns-1.0.0/jinns/utils/_types.py +64 -0
  68. jinns-1.0.0/jinns/utils/_utils.py +68 -0
  69. jinns-1.0.0/jinns/validation/_validation.py +122 -0
  70. {jinns-0.8.10 → jinns-1.0.0}/jinns.egg-info/PKG-INFO +5 -4
  71. {jinns-0.8.10 → jinns-1.0.0}/jinns.egg-info/SOURCES.txt +53 -53
  72. {jinns-0.8.10 → jinns-1.0.0}/jinns.egg-info/requires.txt +3 -2
  73. jinns-1.0.0/mkdocs.yml +134 -0
  74. {jinns-0.8.10 → jinns-1.0.0}/pyproject.toml +3 -3
  75. {jinns-0.8.10 → jinns-1.0.0}/tests/conftest.py +2 -1
  76. jinns-0.8.10/tests/dataGenerator_tests/test_CubicMeshPDENonStatio.py → jinns-1.0.0/tests/dataGenerator_tests/test_CubicMeshPDENonStatio_eqx.py +34 -36
  77. jinns-0.8.10/tests/dataGenerator_tests/test_CubicMeshPDEStatio.py → jinns-1.0.0/tests/dataGenerator_tests/test_CubicMeshPDEStatio_eqx.py +18 -18
  78. jinns-0.8.10/tests/dataGenerator_tests/test_DataGeneratorODE.py → jinns-1.0.0/tests/dataGenerator_tests/test_DataGeneratorODE_eqx.py +1 -1
  79. jinns-0.8.10/tests/dataGenerator_tests/test_DataGeneratorParameter.py → jinns-1.0.0/tests/dataGenerator_tests/test_DataGeneratorParameter_eqx.py +2 -2
  80. {jinns-0.8.10 → jinns-1.0.0}/tests/runtests.sh +12 -6
  81. {jinns-0.8.10 → jinns-1.0.0}/tests/save_load_tests/test_saving_loading_hyperpinn.py +49 -40
  82. jinns-1.0.0/tests/save_load_tests/test_saving_loading_pinn.py +174 -0
  83. {jinns-0.8.10 → jinns-1.0.0}/tests/save_load_tests/test_saving_loading_spinn.py +10 -10
  84. jinns-0.8.10/tests/sharding_tests/test_Burger_x32_multiple_shardings.py → jinns-1.0.0/tests/sharding_tests/test_Burger_x32_multiple_shardings_eqx.py +118 -44
  85. jinns-1.0.0/tests/solver_tests/test_Burger_x32_eqx.py +148 -0
  86. jinns-1.0.0/tests/solver_tests/test_Burger_x64_eqx.py +148 -0
  87. jinns-0.8.10/tests/solver_tests/test_Fisher_x32.py → jinns-1.0.0/tests/solver_tests/test_Fisher_x32_eqx.py +71 -44
  88. jinns-0.8.10/tests/solver_tests/test_Fisher_x64.py → jinns-1.0.0/tests/solver_tests/test_Fisher_x64_eqx.py +70 -42
  89. jinns-0.8.10/tests/solver_tests/test_GLV_x32.py → jinns-1.0.0/tests/solver_tests/test_GLV_x32_eqx.py +36 -25
  90. jinns-0.8.10/tests/solver_tests/test_GLV_x64.py → jinns-1.0.0/tests/solver_tests/test_GLV_x64_eqx.py +34 -25
  91. jinns-0.8.10/tests/solver_tests/test_NSPipeFlow_x32.py → jinns-1.0.0/tests/solver_tests/test_NSPipeFlow_x32_eqx.py +45 -45
  92. jinns-0.8.10/tests/solver_tests/test_NSPipeFlow_x64.py → jinns-1.0.0/tests/solver_tests/test_NSPipeFlow_x64_eqx.py +43 -43
  93. jinns-0.8.10/tests/solver_tests/test_OU2D_x32.py → jinns-1.0.0/tests/solver_tests/test_OU2D_x32_eqx.py +66 -34
  94. jinns-1.0.0/tests/solver_tests/test_nan_params_catch.py +114 -0
  95. jinns-1.0.0/tests/solver_tests/test_parameter_tracker.py +145 -0
  96. {jinns-0.8.10 → jinns-1.0.0}/tests/solver_tests/test_rar_algorithm.py +33 -29
  97. jinns-1.0.0/tests/solver_tests_hyperpinn/test_NSPipeFlow_x32_eqx.py +169 -0
  98. jinns-1.0.0/tests/solver_tests_spinn/test_Burger_x32_eqx.py +152 -0
  99. jinns-1.0.0/tests/solver_tests_spinn/test_Fisher_x32_eqx.py +170 -0
  100. jinns-0.8.10/tests/solver_tests_spinn/test_NSPipeFlow_x32_spinn.py → jinns-1.0.0/tests/solver_tests_spinn/test_NSPipeFlow_x32_spinn_eqx.py +35 -35
  101. jinns-0.8.10/tests/solver_tests_spinn/test_OU2D_x32.py → jinns-1.0.0/tests/solver_tests_spinn/test_OU2D_x32_eqx.py +62 -40
  102. jinns-0.8.10/tests/solver_tests_spinn/test_ReactionDiffusion_nonhomo_x64.py → jinns-1.0.0/tests/solver_tests_spinn/test_ReactionDiffusion_nonhomo_x64_eqx.py +78 -39
  103. {jinns-0.8.10 → jinns-1.0.0}/tests/utils_tests/test_hyperpinns.py +19 -19
  104. {jinns-0.8.10 → jinns-1.0.0}/tests/utils_tests/test_pinn.py +20 -20
  105. {jinns-0.8.10 → jinns-1.0.0}/tests/utils_tests/test_spinn.py +9 -9
  106. jinns-0.8.10/Notebooks/ODE/1D_Generalized_Lotka_Volterra.ipynb +0 -769
  107. jinns-0.8.10/Notebooks/ODE/1D_Generalized_Lotka_Volterra_seq2seq.ipynb +0 -846
  108. jinns-0.8.10/Notebooks/PDE/1D_non_stationary_Burger.ipynb +0 -791
  109. jinns-0.8.10/Notebooks/PDE/1D_non_stationary_Fisher_KPP_Bounded_Domain.ipynb +0 -795
  110. jinns-0.8.10/Notebooks/PDE/2D_Heat_inverse_problem.ipynb +0 -856
  111. jinns-0.8.10/Notebooks/PDE/2D_Navier_Stokes_PipeFlow_Metamodel_hyperpinn.ipynb +0 -1285
  112. jinns-0.8.10/Notebooks/PDE/2D_Navier_Stokes_PipeFlow_SoftConstraints.ipynb +0 -1179
  113. jinns-0.8.10/Notebooks/PDE/2D_Poisson_inverse_problem.ipynb +0 -766
  114. jinns-0.8.10/Notebooks/PDE/2D_non_stationary_OU.ipynb +0 -1168
  115. jinns-0.8.10/Notebooks/PDE/Reaction_Diffusion_2D_heterogenous_model.ipynb +0 -1764
  116. jinns-0.8.10/Notebooks/PDE/Reaction_Diffusion_2D_homogeneous_metamodel_hyperpinn_diffrax.ipynb +0 -1005
  117. jinns-0.8.10/Notebooks/PDE/imperfect_modeling_sobolev_reg.ipynb +0 -1083
  118. jinns-0.8.10/Notebooks/SPDE/SpectralPINN_SPDE_Matern_finite_diff.ipynb +0 -1667
  119. jinns-0.8.10/Notebooks/Tutorials/implementing_your_own_PDE_problem.ipynb +0 -749
  120. jinns-0.8.10/Notebooks/Tutorials/introducing_validation_loss.ipynb +0 -658
  121. jinns-0.8.10/Notebooks/Tutorials/load_save_model.ipynb +0 -316
  122. jinns-0.8.10/doc/Makefile +0 -20
  123. jinns-0.8.10/doc/source/boundary_conditions.rst +0 -7
  124. jinns-0.8.10/doc/source/conf.py +0 -33
  125. jinns-0.8.10/doc/source/data.rst +0 -11
  126. jinns-0.8.10/doc/source/dynamic_loss.rst +0 -20
  127. jinns-0.8.10/doc/source/experimental.rst +0 -11
  128. jinns-0.8.10/doc/source/loss.rst +0 -30
  129. jinns-0.8.10/doc/source/loss_ode.rst +0 -10
  130. jinns-0.8.10/doc/source/loss_pde.rst +0 -10
  131. jinns-0.8.10/doc/source/losses.rst +0 -10
  132. jinns-0.8.10/doc/source/math_pinn.qmd +0 -52
  133. jinns-0.8.10/doc/source/operators.rst +0 -7
  134. jinns-0.8.10/doc/source/param_estim_pinn.qmd +0 -55
  135. jinns-0.8.10/doc/source/rar.rst +0 -8
  136. jinns-0.8.10/doc/source/seq2seq.rst +0 -8
  137. jinns-0.8.10/doc/source/solve.rst +0 -6
  138. jinns-0.8.10/doc/source/solver.rst +0 -20
  139. jinns-0.8.10/doc/source/utils.rst +0 -11
  140. jinns-0.8.10/doc/source/validation.rst +0 -31
  141. jinns-0.8.10/jinns/data/_DataGenerators.py +0 -1672
  142. jinns-0.8.10/jinns/experimental/_sinuspinn.py +0 -135
  143. jinns-0.8.10/jinns/experimental/_spectralpinn.py +0 -87
  144. jinns-0.8.10/jinns/loss/_DynamicLossAbstract.py +0 -220
  145. jinns-0.8.10/jinns/loss/_LossODE.py +0 -566
  146. jinns-0.8.10/jinns/loss/_LossPDE.py +0 -1502
  147. jinns-0.8.10/jinns/loss/__init__.py +0 -11
  148. jinns-0.8.10/jinns/solver/_seq2seq.py +0 -157
  149. jinns-0.8.10/jinns/utils/__init__.py +0 -10
  150. jinns-0.8.10/jinns/utils/_containers.py +0 -57
  151. jinns-0.8.10/jinns/utils/_hyperpinn.py +0 -311
  152. jinns-0.8.10/jinns/utils/_optim.py +0 -147
  153. jinns-0.8.10/jinns/utils/_pinn.py +0 -262
  154. jinns-0.8.10/jinns/utils/_save_load.py +0 -175
  155. jinns-0.8.10/jinns/utils/_spinn.py +0 -235
  156. jinns-0.8.10/jinns/utils/_utils.py +0 -222
  157. jinns-0.8.10/jinns/utils/_utils_uspinn.py +0 -727
  158. jinns-0.8.10/jinns/validation/_validation.py +0 -214
  159. jinns-0.8.10/tests/save_load_tests/test_saving_loading_pinn.py +0 -78
  160. jinns-0.8.10/tests/sharding_tests/test_imperfect_sobolev_x32_multiple_shardings.py +0 -333
  161. jinns-0.8.10/tests/solver_tests/test_Burger_x32.py +0 -112
  162. jinns-0.8.10/tests/solver_tests/test_Burger_x64.py +0 -111
  163. jinns-0.8.10/tests/solver_tests/test_imperfect_sobolev_x32.py +0 -175
  164. jinns-0.8.10/tests/solver_tests_spinn/test_Burger_x32.py +0 -114
  165. jinns-0.8.10/tests/solver_tests_spinn/test_Fisher_x32.py +0 -140
  166. {jinns-0.8.10 → jinns-1.0.0}/.pre-commit-config.yaml +0 -0
  167. {jinns-0.8.10 → jinns-1.0.0}/LICENSE +0 -0
  168. {jinns-0.8.10 → jinns-1.0.0}/Notebooks/ODE/sbinn_data/glucose.dat +0 -0
  169. {jinns-0.8.10 → jinns-1.0.0}/Notebooks/ODE/sbinn_data/meal.dat +0 -0
  170. {jinns-0.8.10 → jinns-1.0.0}/Notebooks/PDE/2d_nonstatio_ou_standardsampling.png +0 -0
  171. {jinns-0.8.10 → jinns-1.0.0}/Notebooks/PDE/OU_1D_nonstatio_solution_grid.npy +0 -0
  172. {jinns-0.8.10 → jinns-1.0.0}/Notebooks/PDE/burger_solution_grid.npy +0 -0
  173. {jinns-0.8.10 → jinns-1.0.0}/README.md +0 -0
  174. {jinns-0.8.10 → jinns-1.0.0}/jinns/solver/__init__.py +0 -0
  175. {jinns-0.8.10 → jinns-1.0.0}/jinns/validation/__init__.py +0 -0
  176. {jinns-0.8.10 → jinns-1.0.0}/jinns.egg-info/dependency_links.txt +0 -0
  177. {jinns-0.8.10 → jinns-1.0.0}/jinns.egg-info/top_level.txt +0 -0
  178. {jinns-0.8.10 → jinns-1.0.0}/setup.cfg +0 -0
{jinns-0.8.10 → jinns-1.0.0}/.gitignore RENAMED
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+ # MkDocs build
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{jinns-0.8.10 → jinns-1.0.0}/.gitlab-ci.yml RENAMED
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- - quarto render doc/source/param_estim_pinn.qmd
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- - quarto render doc/source/fokker_planck.qmd
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- - pip install --break-system-packages sphinx sphinx_rtd_theme
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- - apt install pandoc
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- - pip install --break-system-packages nbsphinx pandoc
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  script:
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  - pip install --break-system-packages .
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- - make -C doc clean html
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+ - mkdocs build
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+ - mkdocs build # twice, see https://github.com/patrick-kidger/pytkdocs_tweaks
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  - public