jaxspec 0.0.6__tar.gz → 0.0.8__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {jaxspec-0.0.6 → jaxspec-0.0.8}/PKG-INFO +14 -10
- jaxspec-0.0.8/pyproject.toml +114 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/analysis/results.py +297 -121
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/data/__init__.py +4 -4
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/data/obsconf.py +53 -8
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/data/util.py +114 -84
- jaxspec-0.0.8/src/jaxspec/fit.py +586 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/model/_additive/apec.py +56 -117
- jaxspec-0.0.8/src/jaxspec/model/_additive/apec_loaders.py +73 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/model/additive.py +194 -55
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/model/background.py +50 -16
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/model/multiplicative.py +63 -41
- jaxspec-0.0.8/src/jaxspec/util/__init__.py +45 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/util/abundance.py +5 -3
- jaxspec-0.0.8/src/jaxspec/util/online_storage.py +28 -0
- jaxspec-0.0.8/src/jaxspec/util/typing.py +43 -0
- jaxspec-0.0.6/pyproject.toml +0 -64
- jaxspec-0.0.6/src/jaxspec/data/example_data/MOS1.pha +0 -46
- jaxspec-0.0.6/src/jaxspec/data/example_data/MOS2.pha +0 -42
- jaxspec-0.0.6/src/jaxspec/data/example_data/PN.pha +1 -293
- jaxspec-0.0.6/src/jaxspec/data/example_data/fakeit.pha +1 -335
- jaxspec-0.0.6/src/jaxspec/fit.py +0 -347
- jaxspec-0.0.6/src/jaxspec/model/__init__.py +0 -1
- jaxspec-0.0.6/src/jaxspec/model/_additive/apec_loaders.py +0 -90
- jaxspec-0.0.6/src/jaxspec/tables/abundances.dat +0 -31
- jaxspec-0.0.6/src/jaxspec/tables/xsect_phabs_aspl.fits +0 -0
- jaxspec-0.0.6/src/jaxspec/tables/xsect_tbabs_wilm.fits +0 -0
- jaxspec-0.0.6/src/jaxspec/tables/xsect_wabs_angr.fits +0 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/LICENSE.md +0 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/README.md +0 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/__init__.py +0 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/analysis/__init__.py +0 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/analysis/compare.py +0 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/data/example_data/MOS1.arf +0 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/data/example_data/MOS1.rmf +0 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/data/example_data/MOS1_spectrum_grp.fits +0 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/data/example_data/MOS1background_spectrum.fits +0 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/data/example_data/MOS2.arf +0 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/data/example_data/MOS2.rmf +0 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/data/example_data/MOS2_spectrum_grp.fits +0 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/data/example_data/MOS2background_spectrum.fits +0 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/data/example_data/PN.arf +0 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/data/example_data/PN.rmf +0 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/data/example_data/PN_spectrum_grp20.fits +0 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/data/example_data/PNbackground_spectrum.fits +0 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/data/grouping.py +0 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/data/instrument.py +0 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/data/observation.py +0 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/data/ogip.py +0 -0
- {jaxspec-0.0.6/src/jaxspec/model/_additive → jaxspec-0.0.8/src/jaxspec/model}/__init__.py +0 -0
- {jaxspec-0.0.6/src/jaxspec/util → jaxspec-0.0.8/src/jaxspec/model/_additive}/__init__.py +0 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/model/abc.py +0 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/model/list.py +0 -0
- {jaxspec-0.0.6 → jaxspec-0.0.8}/src/jaxspec/util/integrate.py +0 -0
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@@ -1,6 +1,6 @@
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Metadata-Version: 2.1
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Name: jaxspec
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Version: 0.0.
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Version: 0.0.8
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Summary: jaxspec is a bayesian spectral fitting library for X-ray astronomy.
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License: MIT
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Author: sdupourque
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@@ -10,24 +10,28 @@ Classifier: License :: OSI Approved :: MIT License
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Classifier: Programming Language :: Python :: 3
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Classifier: Programming Language :: Python :: 3.10
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Classifier: Programming Language :: Python :: 3.11
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Requires-Dist: arviz (>=0.17.1,<0.
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Requires-Dist: arviz (>=0.17.1,<0.20.0)
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Requires-Dist: astropy (>=6.0.0,<7.0.0)
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Requires-Dist: chainconsumer (>=1.0.0,<2.0.0)
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Requires-Dist: interpax (>=0.3.3,<0.4.0)
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Requires-Dist: jax (>=0.4.30,<0.5.0)
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Requires-Dist: jaxlib (>=0.4.30,<0.5.0)
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Requires-Dist: jaxns (>=2.5.1,<3.0.0)
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Requires-Dist: jaxopt (>=0.8.1,<0.9.0)
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[tool.poetry]
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name = "jaxspec"
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version = "0.0.8"
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description = "jaxspec is a bayesian spectral fitting library for X-ray astronomy."
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authors = ["sdupourque <sdupourque@irap.omp.eu>"]
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license = "MIT"
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readme = "README.md"
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[tool.poetry.dependencies]
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python = ">=3.10,<3.12"
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jax = "^0.4.30"
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jaxlib = "^0.4.30"
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numpy = "<2.0.0"
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pandas = "^2.2.0"
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astropy = "^6.0.0"
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numpyro = "^0.15.0"
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dm-haiku = ">=0.0.11,<0.0.13"
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networkx = "^3.1"
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matplotlib = "^3.8.0"
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arviz = ">=0.17.1,<0.20.0"
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chainconsumer = "^1.0.0"
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simpleeval = "^0.9.13"
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cmasher = "^1.6.3"
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gpjax = "^0.8.0"
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jaxopt = "^0.8.1"
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tinygp = "^0.3.0"
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seaborn = "^0.13.1"
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mkdocstrings = ">=0.24,<0.26"
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sparse = "^0.15.1"
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optimistix = "^0.0.7"
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scipy = "<1.14"
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mendeleev = ">=0.15,<0.18"
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pyzmq = "<27"
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jaxns = "^2.5.1"
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pooch = "^1.8.2"
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interpax = "^0.3.3"
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[tool.poetry.group.docs.dependencies]
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mkdocs = "^1.5.3"
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mkdocs-material = "^9.4.6"
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mkdocstrings = {extras = ["python"], version = ">=0.24,<0.26"}
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mkdocs-jupyter = "^0.24.6"
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[tool.poetry.group.test.dependencies]
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chex = "^0.1.83"
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mktestdocs = "^0.2.1"
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coverage = "^7.3.2"
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pytest-cov = ">=4.1,<6.0"
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flake8 = "^7.0.0"
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pytest = "^8.0.0"
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testbook = "^0.4.2"
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[tool.poetry.group.dev.dependencies]
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pre-commit = "^3.5.0"
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ruff = ">=0.2.1,<0.6.0"
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jupyterlab = "^4.0.7"
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notebook = "^7.0.6"
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ipywidgets = "^8.1.1"
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[tool.ruff]
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line-length = 100
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target-version = "py310"
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extend-exclude = ["versioneer.py", "_version.py"]
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[tool.ruff.lint]
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select = ["D", "E", "F", "I", "UP", "W", "RUF"]
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ignore = [
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"F841", # Local variable name is assigned to but never used
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"RUF001", # String contains ambiguous character (such as Greek letters)
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"RUF002", # Docstring contains ambiguous character (such as Greek letters)
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"RUF012", # Mutable class attributes should be annotated with `typing.ClassVar`
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"D100",
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"D417",
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]
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[tool.ruff.lint.pydocstyle]
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convention = "google"
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[tool.ruff.lint.isort]
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lines-between-types = 1
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[tool.ruff.lint.extend-per-file-ignores]
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"__init__.py" = [
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"F401", # Module imported but unused
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"F403", # 'from module import *' used; unable to detect undefined names
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]
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[build-system]
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requires = ["poetry-core"]
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build-backend = "poetry.core.masonry.api"
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