java-codebase-rag 0.9.4__tar.gz → 0.9.5__tar.gz

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Files changed (135) hide show
  1. {java_codebase_rag-0.9.4/java_codebase_rag.egg-info → java_codebase_rag-0.9.5}/PKG-INFO +2 -2
  2. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/README.md +1 -1
  3. java_codebase_rag-0.9.5/absence_diagnosis.py +700 -0
  4. java_codebase_rag-0.9.5/absence_types.py +124 -0
  5. java_codebase_rag-0.9.5/absence_vocab.py +455 -0
  6. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/ast_java.py +1 -1
  7. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/build_ast_graph.py +85 -7
  8. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/graph_enrich.py +245 -0
  9. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/graph_types.py +4 -0
  10. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag/cli.py +1 -6
  11. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag/config.py +116 -0
  12. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag/jrag.py +56 -1
  13. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag/jrag_envelope.py +10 -1
  14. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag/jrag_render.py +67 -3
  15. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag/pipeline.py +10 -0
  16. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5/java_codebase_rag.egg-info}/PKG-INFO +2 -2
  17. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag.egg-info/SOURCES.txt +16 -0
  18. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag.egg-info/top_level.txt +5 -0
  19. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_index_flow_lancedb.py +27 -7
  20. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/ladybug_queries.py +4 -4
  21. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/mcp_v2.py +272 -73
  22. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/pyproject.toml +9 -2
  23. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/resolve_service.py +69 -2
  24. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/search_lancedb.py +50 -311
  25. java_codebase_rag-0.9.5/search_lexical.py +329 -0
  26. java_codebase_rag-0.9.5/search_scoring.py +338 -0
  27. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/server.py +101 -34
  28. java_codebase_rag-0.9.5/tests/test_absence_diagnosis.py +615 -0
  29. java_codebase_rag-0.9.5/tests/test_absence_mcp_integration.py +218 -0
  30. java_codebase_rag-0.9.5/tests/test_absence_types.py +240 -0
  31. java_codebase_rag-0.9.5/tests/test_absence_vocab.py +375 -0
  32. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_brownfield_overrides.py +5 -0
  33. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_cli_progress_stdout_invariant.py +6 -0
  34. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_config.py +76 -0
  35. java_codebase_rag-0.9.5/tests/test_generated_detection.py +218 -0
  36. java_codebase_rag-0.9.5/tests/test_generated_filter.py +247 -0
  37. java_codebase_rag-0.9.5/tests/test_generated_surface.py +291 -0
  38. java_codebase_rag-0.9.5/tests/test_graph_generated_node.py +204 -0
  39. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_graph_only_boot.py +61 -2
  40. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_incremental_graph.py +3 -3
  41. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_java_codebase_rag_cli.py +24 -3
  42. java_codebase_rag-0.9.5/tests/test_jrag_envelope_absence.py +305 -0
  43. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_jrag_status.py +2 -2
  44. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_lance_optimize.py +3 -0
  45. java_codebase_rag-0.9.5/tests/test_lancedb_generated_column.py +143 -0
  46. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_mcp_v2.py +9 -0
  47. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_mcp_v2_compose.py +19 -0
  48. java_codebase_rag-0.9.5/tests/test_search_lexical.py +339 -0
  49. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/LICENSE +0 -0
  50. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/brownfield_events.py +0 -0
  51. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/chunk_heuristics.py +0 -0
  52. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/index_common.py +0 -0
  53. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag/__init__.py +0 -0
  54. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag/_fdlimit.py +0 -0
  55. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag/_stdio.py +0 -0
  56. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag/_version.py +0 -0
  57. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag/cli_format.py +0 -0
  58. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag/cli_progress.py +0 -0
  59. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag/install_data/agents/explorer-rag-cli.md +0 -0
  60. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag/install_data/agents/explorer-rag-enhanced.md +0 -0
  61. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag/install_data/skills/explore-codebase/SKILL.md +0 -0
  62. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag/install_data/skills/explore-codebase-cli/SKILL.md +0 -0
  63. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag/installer.py +0 -0
  64. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag/jrag_hints.py +0 -0
  65. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag/lance_optimize.py +0 -0
  66. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag/progress.py +0 -0
  67. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag.egg-info/dependency_links.txt +0 -0
  68. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag.egg-info/entry_points.txt +0 -0
  69. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_codebase_rag.egg-info/requires.txt +0 -0
  70. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_index_v1_common.py +0 -0
  71. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/java_ontology.py +0 -0
  72. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/mcp_hints.py +0 -0
  73. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/path_filtering.py +0 -0
  74. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/pr_analysis.py +0 -0
  75. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/setup.cfg +0 -0
  76. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_agent_skills_static.py +0 -0
  77. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_assign_endpoint_client_extraction.py +0 -0
  78. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_ast_graph_build.py +0 -0
  79. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_ast_java_calls.py +0 -0
  80. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_ast_java_capabilities.py +0 -0
  81. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_ast_java_thread_safety.py +0 -0
  82. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_bank_chat_brownfield_integration.py +0 -0
  83. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_brownfield_clients.py +0 -0
  84. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_brownfield_events.py +0 -0
  85. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_brownfield_routes.py +0 -0
  86. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_call_edge_matching.py +0 -0
  87. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_call_edges_e2e.py +0 -0
  88. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_call_graph_receiver_resolution.py +0 -0
  89. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_call_graph_smoke_roundtrip.py +0 -0
  90. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_call_invariant.py +0 -0
  91. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_cli_quiet_parity.py +0 -0
  92. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_client_hint_recovery.py +0 -0
  93. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_client_node_extraction.py +0 -0
  94. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_client_role_rename.py +0 -0
  95. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_cross_service_resolution_flag.py +0 -0
  96. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_edge_navigation_doc.py +0 -0
  97. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_fd_limit.py +0 -0
  98. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_feign_not_exposer.py +0 -0
  99. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_graph_enrich.py +0 -0
  100. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_install_data_sync.py +0 -0
  101. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_installer.py +0 -0
  102. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_installer_integration.py +0 -0
  103. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_installer_surface.py +0 -0
  104. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_jrag_auto_scope.py +0 -0
  105. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_jrag_enum_choices.py +0 -0
  106. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_jrag_envelope.py +0 -0
  107. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_jrag_listing.py +0 -0
  108. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_jrag_locate.py +0 -0
  109. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_jrag_orientation.py +0 -0
  110. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_jrag_render.py +0 -0
  111. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_jrag_token_budget.py +0 -0
  112. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_jrag_traversal_compose.py +0 -0
  113. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_jrag_traversal_direct.py +0 -0
  114. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_ladybug_queries.py +0 -0
  115. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_lancedb_e2e.py +0 -0
  116. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_mcp_hints.py +0 -0
  117. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_mcp_server_project_root.py +0 -0
  118. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_mcp_tools.py +0 -0
  119. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_meta_chain_core.py +0 -0
  120. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_microservice_scope.py +0 -0
  121. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_outgoing_call_extraction.py +0 -0
  122. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_packaging_metadata.py +0 -0
  123. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_path_filtering.py +0 -0
  124. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_pipeline.py +0 -0
  125. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_pr_analysis.py +0 -0
  126. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_progress.py +0 -0
  127. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_resolve_routes_messaging_layer_c.py +0 -0
  128. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_resolve_service.py +0 -0
  129. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_route_extraction.py +0 -0
  130. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_schema_consistency.py +0 -0
  131. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_search_lancedb.py +0 -0
  132. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_search_lancedb_capability.py +0 -0
  133. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_string_value_atoms.py +0 -0
  134. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_vectors_progress.py +0 -0
  135. {java_codebase_rag-0.9.4 → java_codebase_rag-0.9.5}/tests/test_version_flag.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: java-codebase-rag
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- Version: 0.9.4
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+ Version: 0.9.5
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  Summary: MCP server for semantic + structural search over Java codebases
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  Author: HumanBean17
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  License-Expression: MIT
@@ -86,7 +86,7 @@ The rest of this README is the install, the tool/command orientation, and the re
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  pip install java-codebase-rag
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  ```
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- Python **3.11+** required, on **Linux, macOS, and Windows**. On Linux, Windows, and **Apple Silicon** Macs every native dependency (LanceDB, LadybugDB/kuzu, CocoIndex) ships a wheel and you get the full semantic + graph search. **Intel Macs (x86_64) install graph-only**: PyTorch ≥2.3 and LanceDB ≥0.26 dropped macOS Intel wheels, so the vector stack is auto-excluded via PEP 508 markers — `pip install java-codebase-rag` works out of the box, the graph layer (`find` / `describe` / `neighbors` / `resolve`) is fully usable, and the `search` (semantic) tool reports it is unavailable rather than failing. After install, `java-codebase-rag --help` should print the CLI groups.
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+ Python **3.11+** required, on **Linux, macOS, and Windows**. On Linux, Windows, and **Apple Silicon** Macs every native dependency (LanceDB, LadybugDB/kuzu, CocoIndex) ships a wheel and you get the full semantic + graph search. **Intel Macs (x86_64) install graph-only**: PyTorch ≥2.3 and LanceDB ≥0.26 dropped macOS Intel wheels, so the vector stack is auto-excluded via PEP 508 markers — `pip install java-codebase-rag` works out of the box, the graph layer (`find` / `describe` / `neighbors` / `resolve`) is fully usable, and the `search` tool falls back to **lexical (keyword) search** over the symbol graph (same tool contract, keyword-ranked instead of semantic; an advisory notes the mode). Semantic/vector search needs Apple Silicon, Linux, or Windows. After install, `java-codebase-rag --help` should print the CLI groups.
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  The package includes the CocoIndex lifecycle dependency used by `init`, `increment`, `reprocess`, and `erase` on platforms that have it (it is absent on Intel Mac).
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  ### Interactive setup (recommended)
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  pip install java-codebase-rag
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  ```
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- Python **3.11+** required, on **Linux, macOS, and Windows**. On Linux, Windows, and **Apple Silicon** Macs every native dependency (LanceDB, LadybugDB/kuzu, CocoIndex) ships a wheel and you get the full semantic + graph search. **Intel Macs (x86_64) install graph-only**: PyTorch ≥2.3 and LanceDB ≥0.26 dropped macOS Intel wheels, so the vector stack is auto-excluded via PEP 508 markers — `pip install java-codebase-rag` works out of the box, the graph layer (`find` / `describe` / `neighbors` / `resolve`) is fully usable, and the `search` (semantic) tool reports it is unavailable rather than failing. After install, `java-codebase-rag --help` should print the CLI groups.
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+ Python **3.11+** required, on **Linux, macOS, and Windows**. On Linux, Windows, and **Apple Silicon** Macs every native dependency (LanceDB, LadybugDB/kuzu, CocoIndex) ships a wheel and you get the full semantic + graph search. **Intel Macs (x86_64) install graph-only**: PyTorch ≥2.3 and LanceDB ≥0.26 dropped macOS Intel wheels, so the vector stack is auto-excluded via PEP 508 markers — `pip install java-codebase-rag` works out of the box, the graph layer (`find` / `describe` / `neighbors` / `resolve`) is fully usable, and the `search` tool falls back to **lexical (keyword) search** over the symbol graph (same tool contract, keyword-ranked instead of semantic; an advisory notes the mode). Semantic/vector search needs Apple Silicon, Linux, or Windows. After install, `java-codebase-rag --help` should print the CLI groups.
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  The package includes the CocoIndex lifecycle dependency used by `init`, `increment`, `reprocess`, and `erase` on platforms that have it (it is absent on Intel Mac).
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  ### Interactive setup (recommended)