java-codebase-rag 0.3.1__tar.gz → 0.5.0__tar.gz

{java_codebase_rag-0.3.1/java_codebase_rag.egg-info → java_codebase_rag-0.5.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: java-codebase-rag
-Version: 0.3.1
+Version: 0.5.0
 Summary: MCP server for semantic + structural search over Java codebases
 Author: HumanBean17
 License-Expression: MIT
@@ -25,11 +25,17 @@ Requires-Dist: mcp<2,>=1.27.0
 Requires-Dist: numpy<2.5,>=1.26.4
 Requires-Dist: pathspec<2,>=1.0.4
 Requires-Dist: pyarrow<24,>=23.0.1
+Requires-Dist: pydantic<3,>=2.0
 Requires-Dist: PyYAML<7,>=6.0.3
+Requires-Dist: questionary<3,>=2.0
 Requires-Dist: sentence-transformers<6,>=5.4.0
 Requires-Dist: tree-sitter<0.26,>=0.25.2
 Requires-Dist: tree-sitter-java<0.24,>=0.23.5
 Requires-Dist: unidiff<1,>=0.7.3
+Provides-Extra: dev
+Requires-Dist: pytest>=7; extra == "dev"
+Requires-Dist: pytest-asyncio>=0.21; extra == "dev"
+Requires-Dist: ruff>=0.4; extra == "dev"
 Dynamic: license-file
 
 # java-codebase-rag
@@ -126,7 +132,9 @@ With the package installed, the console script `java-codebase-rag-mcp` is on you
 claude mcp add --transport stdio java-codebase-rag -- java-codebase-rag-mcp
 ```
 
-Then set env vars (`JAVA_CODEBASE_RAG_INDEX_DIR`, `JAVA_CODEBASE_RAG_SOURCE_ROOT`, `SBERT_MODEL`, …) in `.mcp.json` or your shell profile. For a project-scoped `.mcp.json` template, see [`mcp.json.example`](./mcp.json.example). Official docs: [Claude Code settings](https://docs.anthropic.com/en/docs/claude-code/settings).
+**Zero-env-var configuration:** The tool automatically walks up the directory tree to find `.java-codebase-rag.yml`, so you don't need to set `JAVA_CODEBASE_RAG_SOURCE_ROOT` when working from within a project. Just place the config file at your project root and the tool will find it. See [`mcp.json.example`](./mcp.json.example) for the minimal configuration.
+
+If you need to override defaults, you can set env vars (`JAVA_CODEBASE_RAG_INDEX_DIR`, `JAVA_CODEBASE_RAG_SOURCE_ROOT`, `SBERT_MODEL`, …) in `.mcp.json` or your shell profile. For a full configuration template, see [`mcp.json.example`](./mcp.json.example). Official docs: [Claude Code settings](https://docs.anthropic.com/en/docs/claude-code/settings).
 
 ### Claude Desktop
 
@@ -200,7 +208,7 @@ Run `java-codebase-rag --help` to list grouped subcommands. Operator playbook wi
 | Group | Subcommand | What it does |
 |---|---|---|
 | Lifecycle | `init` | First-time index. Refuses if artifacts already exist. |
-| Lifecycle | `increment` | CocoIndex catch-up (Lance only); Kuzu stays stale until `reprocess`. |
+| Lifecycle | `increment` | CocoIndex catch-up + incremental Kuzu update. `--vectors-only` for Lance only. |
 | Lifecycle | `reprocess` | Full Lance + Kuzu rebuild. `--vectors-only` / `--graph-only` for a single phase. |
 | Lifecycle | `erase` | Delete index artifacts. Requires `--yes` or TTY confirm. |
 | Introspection | `meta`, `tables`, `diagnose-ignore`, `unresolved-calls` | Health, table listing, ignore-layer diagnostics, receiver-failure call sites. |
@@ -244,5 +252,4 @@ The default embedding model is `sentence-transformers/all-MiniLM-L6-v2` (downloa
 
 - `get_service_topology` — microservice-level summary aggregating `HTTP_CALLS` / `ASYNC_CALLS`.
 - Agentic routing layer (query classifier → vector / graph / both).
-- Incremental Kuzu updates (per-changed-file) — see [`propose/TIER2-INCREMENTAL-REBUILD-PROPOSE.md`](./propose/TIER2-INCREMENTAL-REBUILD-PROPOSE.md) and [`propose/INDEX-AUTO-MODE-PROPOSE.md`](./propose/INDEX-AUTO-MODE-PROPOSE.md).
 - Optional `codegraph_nodes` LanceDB table embedding symbol summaries so the graph itself is vector-searchable.

{java_codebase_rag-0.3.1 → java_codebase_rag-0.5.0}/README.md

@@ -92,7 +92,9 @@ With the package installed, the console script `java-codebase-rag-mcp` is on you
 claude mcp add --transport stdio java-codebase-rag -- java-codebase-rag-mcp
 ```
 
-Then set env vars (`JAVA_CODEBASE_RAG_INDEX_DIR`, `JAVA_CODEBASE_RAG_SOURCE_ROOT`, `SBERT_MODEL`, …) in `.mcp.json` or your shell profile. For a project-scoped `.mcp.json` template, see [`mcp.json.example`](./mcp.json.example). Official docs: [Claude Code settings](https://docs.anthropic.com/en/docs/claude-code/settings).
+**Zero-env-var configuration:** The tool automatically walks up the directory tree to find `.java-codebase-rag.yml`, so you don't need to set `JAVA_CODEBASE_RAG_SOURCE_ROOT` when working from within a project. Just place the config file at your project root and the tool will find it. See [`mcp.json.example`](./mcp.json.example) for the minimal configuration.
+
+If you need to override defaults, you can set env vars (`JAVA_CODEBASE_RAG_INDEX_DIR`, `JAVA_CODEBASE_RAG_SOURCE_ROOT`, `SBERT_MODEL`, …) in `.mcp.json` or your shell profile. For a full configuration template, see [`mcp.json.example`](./mcp.json.example). Official docs: [Claude Code settings](https://docs.anthropic.com/en/docs/claude-code/settings).
 
 ### Claude Desktop
 
@@ -166,7 +168,7 @@ Run `java-codebase-rag --help` to list grouped subcommands. Operator playbook wi
 | Group | Subcommand | What it does |
 |---|---|---|
 | Lifecycle | `init` | First-time index. Refuses if artifacts already exist. |
-| Lifecycle | `increment` | CocoIndex catch-up (Lance only); Kuzu stays stale until `reprocess`. |
+| Lifecycle | `increment` | CocoIndex catch-up + incremental Kuzu update. `--vectors-only` for Lance only. |
 | Lifecycle | `reprocess` | Full Lance + Kuzu rebuild. `--vectors-only` / `--graph-only` for a single phase. |
 | Lifecycle | `erase` | Delete index artifacts. Requires `--yes` or TTY confirm. |
 | Introspection | `meta`, `tables`, `diagnose-ignore`, `unresolved-calls` | Health, table listing, ignore-layer diagnostics, receiver-failure call sites. |
@@ -210,5 +212,4 @@ The default embedding model is `sentence-transformers/all-MiniLM-L6-v2` (downloa
 
 - `get_service_topology` — microservice-level summary aggregating `HTTP_CALLS` / `ASYNC_CALLS`.
 - Agentic routing layer (query classifier → vector / graph / both).
-- Incremental Kuzu updates (per-changed-file) — see [`propose/TIER2-INCREMENTAL-REBUILD-PROPOSE.md`](./propose/TIER2-INCREMENTAL-REBUILD-PROPOSE.md) and [`propose/INDEX-AUTO-MODE-PROPOSE.md`](./propose/INDEX-AUTO-MODE-PROPOSE.md).
 - Optional `codegraph_nodes` LanceDB table embedding symbol summaries so the graph itself is vector-searchable.

{java_codebase_rag-0.3.1 → java_codebase_rag-0.5.0}/ast_java.py

@@ -83,7 +83,7 @@ _DTO_LOMBOK_ANNOTATIONS: frozenset[str] = frozenset({
 # Phase 11: `EDGE_SCHEMA` in `java_ontology.py` (canonical edge navigation schema; v14 re-index).
 # Phase 12: CALLS `callee_declaring_role`, supertype-walk dedup, pass3 unresolved counters (v15 re-index).
 # Bumps whenever extraction / enrichment semantics change.
-ONTOLOGY_VERSION = 16
+ONTOLOGY_VERSION = 17
 
 ROLE_ANNOTATIONS: dict[str, str] = {
     # Spring Web