jarvisplot 2.0.6__tar.gz → 2.1.1__tar.gz

jarvisplot-2.1.1/JarvisPLOT.egg-info/PKG-INFO

@@ -0,0 +1,296 @@
+Metadata-Version: 2.4
+Name: JarvisPLOT
+Version: 2.1.1
+Summary: Jarvis-PLOT: YAML-driven plotting engine
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+Requires-Dist: loguru
+Requires-Dist: pyyaml
+Requires-Dist: ruamel.yaml>=0.18
+Requires-Dist: jsonschema
+Requires-Dist: Jarvis-Operas>=1.1.4
+Requires-Dist: numpy
+Requires-Dist: pandas
+Requires-Dist: polars
+Requires-Dist: matplotlib
+Requires-Dist: h5py
+Requires-Dist: sympy
+Requires-Dist: scipy
+Requires-Dist: shapely
+Requires-Dist: deepmerge
+Requires-Dist: rich
+
+# Jarvis-PLOT
+
+Jarvis-PLOT is a lightweight, Python/Matplotlib-based plotting framework developed for **Jarvis-HEP**,  
+but it can also be used as a **standalone scientific plotting tool**.
+
+It provides a simple command-line interface (CLI) to generate publication-quality figures from YAML configuration files, with most layout and style decisions handled by predefined profiles and style cards.
+
+Current release: **2.0.6** (`jplot -v` reports the installed version).
+
+---
+
+## Installation
+
+```bash
+pip install JarvisPLOT
+```
+
+The PyPI / distribution name is `JarvisPLOT` (normalized wheel name: `jarvisplot`).
+The product name remains **Jarvis-PLOT**.
+The Python import package and entrypoint remain unchanged:
+
+```python
+import jarvisplot
+```
+
+```bash
+jplot path/to/config.yaml
+```
+
+If you have an older environment that still uses a historical package name, replace:
+
+```bash
+pip uninstall jarvisplot Jarvis-PLOT JarvisPLOT
+pip install JarvisPLOT
+```
+
+## Command-Line Usage
+
+Human help uses the same fixed-column Rich panels as Jarvis-HEP V2 / Portal;
+`jplot -h` prints the verb map, and `jplot <verb> -h` opens one verb.
+
+Render with a bare path — there is no `jplot run`:
+
+```bash
+jplot path/to/config.yaml
+jplot path/to/config.yaml --rebuild-cache
+```
+
+Everything else is discovery and judgement, in three groups.
+
+**Discover** — find out what is legal before writing anything:
+
+```bash
+jplot data describe samples.csv     # columns, dtypes, ranges (HDF5 tree too)
+jplot data head samples.csv -n 5    # real sample rows
+jplot data eval 'exp(LogL)' --data samples.csv    # sandbox an expr
+jplot data suggest-axes samples.csv # scale / lim hints for frame.ax
+jplot cap                           # section index
+jplot cap methods                   # all | methods | transforms | types
+jplot cap styles                    #   | styles | cmaps | funcs | cli
+jplot man                           # manual index
+jplot man workflow                  # topic page
+jplot man scatter                   # one method's contract
+jplot explain JP-COL-001            # a diagnostic code
+```
+
+**Draft & edit** — scaffold or address a YAML by name:
+
+```bash
+jplot template list                 # template kinds
+jplot template show posterior_2d    # one template + its slots
+jplot suggest --data samples.csv --kind posterior_2d
+jplot config paths plot.yaml        # named addresses in this file
+jplot config get plot.yaml 'Figures[p].style'
+jplot config set plot.yaml 'Figures[p].frame.ax.xlim' '[0, 10]' --write
+jplot config expand plot.yaml --figure p --write   # type: → layers
+```
+
+**Judge** — check without rendering:
+
+```bash
+jplot validate plot.yaml            # schema + contracts, no data touched
+jplot dryrun plot.yaml              # load data + transforms, row ledger, JP-VIZ health
+jplot doctor plot.yaml              # validate + dryrun in one pass
+```
+
+Every one of these takes `--json`.
+
+### Design-Reference Overlay
+
+Set `debug: true` on a figure and Jarvis-PLOT draws a dimension overlay on top
+of it: every axes box labelled with its rect and its size in centimetres, page
+margins, the colorbar gap, and an "axes layout" panel. It is meant for checking
+a layout, so a figure with `layers: []` is a legitimate use.
+
+```yaml
+Figures:
+  - name: layout_check
+    debug: true
+    style: [a4paper_2x1, rectcmap]
+    layers: []
+```
+
+The style card's `Debug` block decides what the annotations look like and which
+of them appear; a per-figure `debug:` mapping overrides the card for that figure
+only. See `jplot man debug-overlay` and `docs/specs/STYLE_SCHEMA.md`.
+
+> `Figures[].debug` is not the `jplot --debug` flag — the flag only raises the
+> log level.
+
+## For Coding Agents
+
+Jarvis-PLOT is built so a coding agent can drive it without ever seeing a
+rendered figure. The rule is **the agent writes the YAML itself**; the CLI's job
+is to say what is legal and to judge what was written. There is no verb that
+generates a finished config for you.
+
+Every discovery and judging verb prints **one JSON envelope on stdout**, with
+humans and logs on stderr:
+
+```json
+{"api_version": 1, "kind": "cap.methods", "ok": true,
+ "data": {...}, "diagnostics": [], "error": null}
+```
+
+`--json` turns it on, and it is **already the default when stdout is not a
+TTY** — piping is enough.
+
+The loop `jplot man` prints is:
+
+1. `jplot data describe <file> --json` — column names from the real file. Never
+   invent one; a wrong name is a hard error, not a warning.
+2. `jplot cap methods|styles|cmaps|funcs|transforms|types --json` — the legal
+   strings, read live from the registries rather than from documentation.
+3. Edit the YAML in an editor (or `jplot config set … --write`). Reach for a
+   `type:` macro first, drop to explicit `layers` when the macro cannot say it.
+4. `jplot doctor <file> --json` — validate + dryrun in one pass. Diagnostics
+   carry `JP-*` codes; `jplot explain JP-XXX-NNN` expands any of them.
+5. `jplot <file>` — render, only when the figure itself is needed.
+
+`jplot man --json` is the machine-readable manual: 15 topics, plus a
+live page for every one of the 28 layer methods and 11 transform steps
+(`jplot man scatter`, `jplot man transform.profile`). Method contracts come from
+the same registry `jplot cap methods` reads, so a man page cannot drift from the
+code.
+
+Two things worth knowing before trusting a config:
+
+- `jplot validate` checks shape and contracts and never touches the data;
+  `jplot dryrun` loads the data and reports the row ledger and JP-VIZ render
+  health. Passing the first says nothing about the second.
+- `docs/specs/AGENT_DATA_API.md` describes a *different*, still-frozen bridge
+  (a numeric digest channel for Jarvis-Agent). The surface above is what ships
+  today.
+
+---
+
+## Flowchart Rendering
+
+Render a Jarvis-HEP flowchart scene JSON (produced by HEP scan tooling — this is
+not general plot YAML):
+
+```bash
+jplot flowchart path/to/scene.json
+# optional output path:
+jplot flowchart path/to/scene.json -o path/to/out.png
+```
+
+Library form:
+
+```python
+from jarvisplot import render_flowchart, render_flowchart_file
+```
+
+### Project Workdir and Cache
+
+- You can set `project.workdir` in YAML.
+- If `output.dir` is omitted, Jarvis-PLOT defaults to `<workdir>/plots/`.
+- Data cache is stored in `<workdir>/.cache/`.
+- Profiling pipelines are prebuilt once and reused from cache when source fingerprint and profile settings are unchanged.
+- Profiling uses a fast two-stage grid reduction (`pregrid` + render `bin`) for large datasets.
+
+### Example: SUSYRun2 Ternary Plots
+
+```bash
+jplot ./bin/SUSYRun2_EWMSSM.yaml
+jplot ./bin/SUSYRun2_GEWMSSM.yaml
+```
+
+> **Note:** The data file paths inside the YAML files must be updated to match your local setup.
+
+### Example: Dynesty Runplot
+
+Jarvis-PLOT includes a reusable dynesty runplot format. With a dataset named
+`dynesty`, the figure can use the built-in card without writing axes or layer
+details:
+
+```yaml
+DataSet:
+- name: dynesty
+  path: path/to/dynesty_result.csv
+  type: csv
+
+Figures:
+- name: dynesty_logL_vs_logX
+  enable: true
+  style:
+  - a4paper_2x1
+  - dynesty_runplot
+```
+
+See `docs/specs/DYNESTY_RUNPLOT.md` for the default axes, KDE, scatter overlay,
+and evidence summary behavior.
+
+---
+
+## Notes
+
+- Figures are saved automatically to the output paths defined in the YAML configuration.
+- Common output formats include PNG and PDF (backend-dependent).
+- Saved figures include file metadata such as `Creator: Jarvis-PLOT, powered by Jarvis-HEP` and `Jarvis-PLOT version: X.Y.Z`; the PNG `Description` also includes both fields for macOS Finder compatibility.
+- Jarvis-PLOT works in headless environments (SSH, batch jobs) without any GUI backend.
+
+---
+
+## Requirements
+
+### Python
+- **Python ≥ 3.10** (tested on 3.10–3.13)
+
+### Required Packages
+- `numpy`
+- `pandas`
+- `polars`
+- `matplotlib`
+- `pyyaml`
+- `jsonschema`
+- `scipy` — numerical utilities
+- `h5py` — required for loading HDF5 data files
+- `shapely`
+- `sympy`
+- `loguru`
+- `deepmerge`
+- `ruamel.yaml>=0.18` — round-trip YAML editing for `jplot config set`
+- `rich` — the fixed-column help and manual panels
+- `Jarvis-Operas>=1.1.4`
+
+### Github Page
+[https://github.com/Pengxuan-Zhu-Phys/Jarvis-PLOT](https://github.com/Pengxuan-Zhu-Phys/Jarvis-PLOT)
+
+### Documentation
+[https://pengxuan-zhu-phys.github.io/Jarvis-Docs/](https://pengxuan-zhu-phys.github.io/Jarvis-Docs/)
+
+### Repository Docs
+
+Tracked project docs live in `docs/`.
+
+- `docs/README.md` - repo doc index
+- `docs/context/JARVIS_PLOT_CONTEXT.md` - primary Codex-facing boundary doc
+- `docs/context/CODE_MAP_JARVIS_PLOT.md` - concrete code owner map
+- `docs/context/JARVIS_PLOT_FRAMEWORK_LOGIC.md` - runtime execution contract
+- `docs/roadmap/IMPLEMENTATION_ROADMAP.md` - active backlog and future work list
+- `docs/specs/AGENT_DATA_API.md` - planned numeric agent bridge (spec only, frozen — not the shipped CLI agent surface above)
+- `docs/specs/STYLE_SCHEMA.md` - style card contract, including the `Debug` overlay block
+- `docs/dev/DEVELOPER_RULES.md` - current pipeline and cache rules
+- `docs/dev/MEMORY_OPTIMIZATION_GUIDE.md` - narrow-table memory notes
+
+Read the context docs and roadmap before changing parsing, transforms, rendering, or layout-related behavior.
+
+---
+
+## License
+
+MIT License

{jarvisplot-2.0.6 → jarvisplot-2.1.1}/JarvisPLOT.egg-info/SOURCES.txt

@@ -26,6 +26,7 @@ jarvisplot/data_loader.py
 jarvisplot/data_loader_hdf5.py
 jarvisplot/data_loader_runtime.py
 jarvisplot/data_loader_summary.py
+jarvisplot/dataset_types.py
 jarvisplot/diagnostic_guidance.py
 jarvisplot/diagnostics.py
 jarvisplot/dryrun_runtime.py
@@ -50,8 +51,14 @@ jarvisplot/yaml_io.py
 jarvisplot/Figure/__init__.py
 jarvisplot/Figure/adapters_rect.py
 jarvisplot/Figure/adapters_ternary.py
+jarvisplot/Figure/bin_stat_runtime.py
 jarvisplot/Figure/colorbar_runtime.py
 jarvisplot/Figure/config_runtime.py
+jarvisplot/Figure/corr_layout.py
+jarvisplot/Figure/corr_layout_diamond.py
+jarvisplot/Figure/corr_order.py
+jarvisplot/Figure/correlation_runtime.py
+jarvisplot/Figure/corrplot_runtime.py
 jarvisplot/Figure/data_pipelines.py
 jarvisplot/Figure/debug_config.py
 jarvisplot/Figure/density_cell_runtime.py
@@ -72,6 +79,7 @@ jarvisplot/Figure/posterior_mesh.py
 jarvisplot/Figure/preprocessor.py
 jarvisplot/Figure/preprocessor_runtime.py
 jarvisplot/Figure/profile_runtime.py
+jarvisplot/Figure/significance_runtime.py
 jarvisplot/Figure/style_runtime.py
 jarvisplot/Figure/cards/std_axes_adapter_config.json
 jarvisplot/cards/args.json
@@ -90,6 +98,8 @@ jarvisplot/cards/a4paper/4x1/rect_cmap.json
 jarvisplot/cards/a4paper/4x1/ternary.json
 jarvisplot/cards/a4paper/4x1/ternary_cmap.json
 jarvisplot/cards/colors/colormaps.json
+jarvisplot/cards/corrplot/diamond.json
+jarvisplot/cards/corrplot/matrix.json
 jarvisplot/cards/default/output.json
 jarvisplot/cards/flowchart/default.json
 jarvisplot/cards/gambit/1x1/ternary.json
@@ -115,6 +125,7 @@ jarvisplot/manual_cards/layer-method.yaml
 jarvisplot/manual_cards/manifest.yaml
 jarvisplot/manual_cards/method_notes.yaml
 jarvisplot/manual_cards/style-axes.yaml
+jarvisplot/manual_cards/type-correlation-matrix.yaml
 jarvisplot/manual_cards/type-posterior-2d.yaml
 jarvisplot/manual_cards/type-profile-2d.yaml
 jarvisplot/manual_cards/validate.yaml
@@ -131,6 +142,7 @@ jarvisplot/schema/methods/bar.json
 jarvisplot/schema/methods/barh.json
 jarvisplot/schema/methods/contour.json
 jarvisplot/schema/methods/contourf.json
+jarvisplot/schema/methods/corrplot.json
 jarvisplot/schema/methods/dynesty_runplot.json
 jarvisplot/schema/methods/errorbar.json
 jarvisplot/schema/methods/fill.json
@@ -147,6 +159,7 @@ jarvisplot/schema/methods/pcolormesh.json
 jarvisplot/schema/methods/plot.json
 jarvisplot/schema/methods/quiver.json
 jarvisplot/schema/methods/scatter.json
+jarvisplot/schema/methods/stairs.json
 jarvisplot/schema/methods/step.json
 jarvisplot/schema/methods/tricontour.json
 jarvisplot/schema/methods/tricontourf.json
@@ -184,6 +197,8 @@ tests/test_column_existence.py
 tests/test_config_addressing.py
 tests/test_config_edit.py
 tests/test_config_expand.py
+tests/test_correlation_runtime.py
+tests/test_corrplot.py
 tests/test_data_access.py
 tests/test_data_describe.py
 tests/test_data_head_eval.py
@@ -202,6 +217,7 @@ tests/test_figure_contracts.py
 tests/test_figure_type_expander.py
 tests/test_fix_application.py
 tests/test_flowchart_renderer.py
+tests/test_imshow_adapter.py
 tests/test_interp_2d_transform.py
 tests/test_interp_natural_neighbor.py
 tests/test_interpolator_contracts.py

jarvisplot-2.1.1/PKG-INFO

@@ -0,0 +1,296 @@
+Metadata-Version: 2.4
+Name: JarvisPLOT
+Version: 2.1.1
+Summary: Jarvis-PLOT: YAML-driven plotting engine
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+Requires-Dist: loguru
+Requires-Dist: pyyaml
+Requires-Dist: ruamel.yaml>=0.18
+Requires-Dist: jsonschema
+Requires-Dist: Jarvis-Operas>=1.1.4
+Requires-Dist: numpy
+Requires-Dist: pandas
+Requires-Dist: polars
+Requires-Dist: matplotlib
+Requires-Dist: h5py
+Requires-Dist: sympy
+Requires-Dist: scipy
+Requires-Dist: shapely
+Requires-Dist: deepmerge
+Requires-Dist: rich
+
+# Jarvis-PLOT
+
+Jarvis-PLOT is a lightweight, Python/Matplotlib-based plotting framework developed for **Jarvis-HEP**,  
+but it can also be used as a **standalone scientific plotting tool**.
+
+It provides a simple command-line interface (CLI) to generate publication-quality figures from YAML configuration files, with most layout and style decisions handled by predefined profiles and style cards.
+
+Current release: **2.0.6** (`jplot -v` reports the installed version).
+
+---
+
+## Installation
+
+```bash
+pip install JarvisPLOT
+```
+
+The PyPI / distribution name is `JarvisPLOT` (normalized wheel name: `jarvisplot`).
+The product name remains **Jarvis-PLOT**.
+The Python import package and entrypoint remain unchanged:
+
+```python
+import jarvisplot
+```
+
+```bash
+jplot path/to/config.yaml
+```
+
+If you have an older environment that still uses a historical package name, replace:
+
+```bash
+pip uninstall jarvisplot Jarvis-PLOT JarvisPLOT
+pip install JarvisPLOT
+```
+
+## Command-Line Usage
+
+Human help uses the same fixed-column Rich panels as Jarvis-HEP V2 / Portal;
+`jplot -h` prints the verb map, and `jplot <verb> -h` opens one verb.
+
+Render with a bare path — there is no `jplot run`:
+
+```bash
+jplot path/to/config.yaml
+jplot path/to/config.yaml --rebuild-cache
+```
+
+Everything else is discovery and judgement, in three groups.
+
+**Discover** — find out what is legal before writing anything:
+
+```bash
+jplot data describe samples.csv     # columns, dtypes, ranges (HDF5 tree too)
+jplot data head samples.csv -n 5    # real sample rows
+jplot data eval 'exp(LogL)' --data samples.csv    # sandbox an expr
+jplot data suggest-axes samples.csv # scale / lim hints for frame.ax
+jplot cap                           # section index
+jplot cap methods                   # all | methods | transforms | types
+jplot cap styles                    #   | styles | cmaps | funcs | cli
+jplot man                           # manual index
+jplot man workflow                  # topic page
+jplot man scatter                   # one method's contract
+jplot explain JP-COL-001            # a diagnostic code
+```
+
+**Draft & edit** — scaffold or address a YAML by name:
+
+```bash
+jplot template list                 # template kinds
+jplot template show posterior_2d    # one template + its slots
+jplot suggest --data samples.csv --kind posterior_2d
+jplot config paths plot.yaml        # named addresses in this file
+jplot config get plot.yaml 'Figures[p].style'
+jplot config set plot.yaml 'Figures[p].frame.ax.xlim' '[0, 10]' --write
+jplot config expand plot.yaml --figure p --write   # type: → layers
+```
+
+**Judge** — check without rendering:
+
+```bash
+jplot validate plot.yaml            # schema + contracts, no data touched
+jplot dryrun plot.yaml              # load data + transforms, row ledger, JP-VIZ health
+jplot doctor plot.yaml              # validate + dryrun in one pass
+```
+
+Every one of these takes `--json`.
+
+### Design-Reference Overlay
+
+Set `debug: true` on a figure and Jarvis-PLOT draws a dimension overlay on top
+of it: every axes box labelled with its rect and its size in centimetres, page
+margins, the colorbar gap, and an "axes layout" panel. It is meant for checking
+a layout, so a figure with `layers: []` is a legitimate use.
+
+```yaml
+Figures:
+  - name: layout_check
+    debug: true
+    style: [a4paper_2x1, rectcmap]
+    layers: []
+```
+
+The style card's `Debug` block decides what the annotations look like and which
+of them appear; a per-figure `debug:` mapping overrides the card for that figure
+only. See `jplot man debug-overlay` and `docs/specs/STYLE_SCHEMA.md`.
+
+> `Figures[].debug` is not the `jplot --debug` flag — the flag only raises the
+> log level.
+
+## For Coding Agents
+
+Jarvis-PLOT is built so a coding agent can drive it without ever seeing a
+rendered figure. The rule is **the agent writes the YAML itself**; the CLI's job
+is to say what is legal and to judge what was written. There is no verb that
+generates a finished config for you.
+
+Every discovery and judging verb prints **one JSON envelope on stdout**, with
+humans and logs on stderr:
+
+```json
+{"api_version": 1, "kind": "cap.methods", "ok": true,
+ "data": {...}, "diagnostics": [], "error": null}
+```
+
+`--json` turns it on, and it is **already the default when stdout is not a
+TTY** — piping is enough.
+
+The loop `jplot man` prints is:
+
+1. `jplot data describe <file> --json` — column names from the real file. Never
+   invent one; a wrong name is a hard error, not a warning.
+2. `jplot cap methods|styles|cmaps|funcs|transforms|types --json` — the legal
+   strings, read live from the registries rather than from documentation.
+3. Edit the YAML in an editor (or `jplot config set … --write`). Reach for a
+   `type:` macro first, drop to explicit `layers` when the macro cannot say it.
+4. `jplot doctor <file> --json` — validate + dryrun in one pass. Diagnostics
+   carry `JP-*` codes; `jplot explain JP-XXX-NNN` expands any of them.
+5. `jplot <file>` — render, only when the figure itself is needed.
+
+`jplot man --json` is the machine-readable manual: 15 topics, plus a
+live page for every one of the 28 layer methods and 11 transform steps
+(`jplot man scatter`, `jplot man transform.profile`). Method contracts come from
+the same registry `jplot cap methods` reads, so a man page cannot drift from the
+code.
+
+Two things worth knowing before trusting a config:
+
+- `jplot validate` checks shape and contracts and never touches the data;
+  `jplot dryrun` loads the data and reports the row ledger and JP-VIZ render
+  health. Passing the first says nothing about the second.
+- `docs/specs/AGENT_DATA_API.md` describes a *different*, still-frozen bridge
+  (a numeric digest channel for Jarvis-Agent). The surface above is what ships
+  today.
+
+---
+
+## Flowchart Rendering
+
+Render a Jarvis-HEP flowchart scene JSON (produced by HEP scan tooling — this is
+not general plot YAML):
+
+```bash
+jplot flowchart path/to/scene.json
+# optional output path:
+jplot flowchart path/to/scene.json -o path/to/out.png
+```
+
+Library form:
+
+```python
+from jarvisplot import render_flowchart, render_flowchart_file
+```
+
+### Project Workdir and Cache
+
+- You can set `project.workdir` in YAML.
+- If `output.dir` is omitted, Jarvis-PLOT defaults to `<workdir>/plots/`.
+- Data cache is stored in `<workdir>/.cache/`.
+- Profiling pipelines are prebuilt once and reused from cache when source fingerprint and profile settings are unchanged.
+- Profiling uses a fast two-stage grid reduction (`pregrid` + render `bin`) for large datasets.
+
+### Example: SUSYRun2 Ternary Plots
+
+```bash
+jplot ./bin/SUSYRun2_EWMSSM.yaml
+jplot ./bin/SUSYRun2_GEWMSSM.yaml
+```
+
+> **Note:** The data file paths inside the YAML files must be updated to match your local setup.
+
+### Example: Dynesty Runplot
+
+Jarvis-PLOT includes a reusable dynesty runplot format. With a dataset named
+`dynesty`, the figure can use the built-in card without writing axes or layer
+details:
+
+```yaml
+DataSet:
+- name: dynesty
+  path: path/to/dynesty_result.csv
+  type: csv
+
+Figures:
+- name: dynesty_logL_vs_logX
+  enable: true
+  style:
+  - a4paper_2x1
+  - dynesty_runplot
+```
+
+See `docs/specs/DYNESTY_RUNPLOT.md` for the default axes, KDE, scatter overlay,
+and evidence summary behavior.
+
+---
+
+## Notes
+
+- Figures are saved automatically to the output paths defined in the YAML configuration.
+- Common output formats include PNG and PDF (backend-dependent).
+- Saved figures include file metadata such as `Creator: Jarvis-PLOT, powered by Jarvis-HEP` and `Jarvis-PLOT version: X.Y.Z`; the PNG `Description` also includes both fields for macOS Finder compatibility.
+- Jarvis-PLOT works in headless environments (SSH, batch jobs) without any GUI backend.
+
+---
+
+## Requirements
+
+### Python
+- **Python ≥ 3.10** (tested on 3.10–3.13)
+
+### Required Packages
+- `numpy`
+- `pandas`
+- `polars`
+- `matplotlib`
+- `pyyaml`
+- `jsonschema`
+- `scipy` — numerical utilities
+- `h5py` — required for loading HDF5 data files
+- `shapely`
+- `sympy`
+- `loguru`
+- `deepmerge`
+- `ruamel.yaml>=0.18` — round-trip YAML editing for `jplot config set`
+- `rich` — the fixed-column help and manual panels
+- `Jarvis-Operas>=1.1.4`
+
+### Github Page
+[https://github.com/Pengxuan-Zhu-Phys/Jarvis-PLOT](https://github.com/Pengxuan-Zhu-Phys/Jarvis-PLOT)
+
+### Documentation
+[https://pengxuan-zhu-phys.github.io/Jarvis-Docs/](https://pengxuan-zhu-phys.github.io/Jarvis-Docs/)
+
+### Repository Docs
+
+Tracked project docs live in `docs/`.
+
+- `docs/README.md` - repo doc index
+- `docs/context/JARVIS_PLOT_CONTEXT.md` - primary Codex-facing boundary doc
+- `docs/context/CODE_MAP_JARVIS_PLOT.md` - concrete code owner map
+- `docs/context/JARVIS_PLOT_FRAMEWORK_LOGIC.md` - runtime execution contract
+- `docs/roadmap/IMPLEMENTATION_ROADMAP.md` - active backlog and future work list
+- `docs/specs/AGENT_DATA_API.md` - planned numeric agent bridge (spec only, frozen — not the shipped CLI agent surface above)
+- `docs/specs/STYLE_SCHEMA.md` - style card contract, including the `Debug` overlay block
+- `docs/dev/DEVELOPER_RULES.md` - current pipeline and cache rules
+- `docs/dev/MEMORY_OPTIMIZATION_GUIDE.md` - narrow-table memory notes
+
+Read the context docs and roadmap before changing parsing, transforms, rendering, or layout-related behavior.
+
+---
+
+## License
+
+MIT License