jarvisplot 1.3.0__tar.gz → 1.3.1__tar.gz

{jarvisplot-1.3.0 → jarvisplot-1.3.1/JarvisPLOT.egg-info}/PKG-INFO

@@ -1,7 +1,7 @@
 Metadata-Version: 2.4
-Name: jarvisplot
-Version: 1.3.0
-Summary: JarvisPLOT: YAML-driven plotting engine
+Name: JarvisPLOT
+Version: 1.3.1
+Summary: Jarvis-PLOT: YAML-driven plotting engine
 Requires-Python: >=3.10
 Description-Content-Type: text/markdown
 Requires-Dist: loguru
@@ -18,19 +18,37 @@ Requires-Dist: scipy
 Requires-Dist: shapely
 Requires-Dist: deepmerge
 
-# JarvisPLOT
+# Jarvis-PLOT
 
-JarvisPLOT is a lightweight, Python/Matplotlib-based plotting framework developed for **Jarvis-HEP**,  
+Jarvis-PLOT is a lightweight, Python/Matplotlib-based plotting framework developed for **Jarvis-HEP**,  
 but it can also be used as a **standalone scientific plotting tool**.
 
 It provides a simple command-line interface (CLI) to generate publication-quality figures from YAML configuration files, with most layout and style decisions handled by predefined profiles and style cards.
 
 ---
 
-## Installation 
+## Installation
 
-```bash 
-pip install jarvisplot
+```bash
+pip install Jarvis-PLOT
+```
+
+The PyPI distribution name is now `Jarvis-PLOT`.
+The Python import package and entrypoint remain unchanged:
+
+```python
+import jarvisplot
+```
+
+```bash
+jplot path/to/config.yaml
+```
+
+If you have an older environment that still uses the historical package name, replace:
+
+```bash
+pip uninstall jarvisplot
+pip install Jarvis-PLOT
 ```
 
 ## Command-Line Usage
@@ -41,7 +59,7 @@ Display help information:
 jplot -h
 ```
 
-Run JarvisPLOT with one or more YAML configuration files:
+Run Jarvis-PLOT with one or more YAML configuration files:
 
 ```bash
 jplot path/to/config.yaml
@@ -56,7 +74,7 @@ jplot path/to/config.yaml --rebuild-cache
 ### Project Workdir and Cache
 
 - You can set `project.workdir` in YAML.
-- If `output.dir` is omitted, JarvisPLOT now defaults to `<workdir>/plots/`.
+- If `output.dir` is omitted, Jarvis-PLOT defaults to `<workdir>/plots/`.
 - Data cache is stored in `<workdir>/.cache/`.
 - Profiling pipelines are prebuilt once and reused from cache when source fingerprint and profile settings are unchanged.
 - Profiling uses a fast two-stage grid reduction (`pregrid` + render `bin`) for large datasets.
@@ -76,7 +94,7 @@ jplot ./bin/SUSYRun2_GEWMSSM.yaml
 
 - Figures are saved automatically to the output paths defined in the YAML configuration.
 - Common output formats include PNG and PDF (backend-dependent).
-- JarvisPLOT works in headless environments (SSH, batch jobs) without any GUI backend.
+- Jarvis-PLOT works in headless environments (SSH, batch jobs) without any GUI backend.
 
 ---
 
@@ -103,6 +121,19 @@ jplot ./bin/SUSYRun2_GEWMSSM.yaml
 ### Documentation
 [https://pengxuan-zhu-phys.github.io/Jarvis-Docs/](https://pengxuan-zhu-phys.github.io/Jarvis-Docs/)
 
+### Developer Docs
+
+Tracked architecture and maintenance docs now live in `docs/dev/`.
+
+- `docs/dev/ARCHITECTURE_OVERVIEW.md`
+- `docs/dev/DATAFLOW_ARCHITECTURE.md`
+- `docs/dev/MEMORY_OPTIMIZATION_GUIDE.md`
+- `docs/dev/DEVELOPER_RULES.md`
+- `docs/dev/MEMTRACE_SYSTEM.md`
+- `docs/dev/CONTRIBUTION_GUIDE.md`
+
+These documents describe the 1.3.0 selection-table pipeline architecture that 1.3.1 consolidates. Future work should preserve the narrow-table dataflow and must not reintroduce wide-table profiling or cache payloads.
+
 ---
 
 ## License

{jarvisplot-1.3.0/jarvisplot.egg-info → jarvisplot-1.3.1/JarvisPLOT.egg-info}/SOURCES.txt

@@ -1,5 +1,11 @@
 README.md
 pyproject.toml
+JarvisPLOT.egg-info/PKG-INFO
+JarvisPLOT.egg-info/SOURCES.txt
+JarvisPLOT.egg-info/dependency_links.txt
+JarvisPLOT.egg-info/entry_points.txt
+JarvisPLOT.egg-info/requires.txt
+JarvisPLOT.egg-info/top_level.txt
 jarvisplot/__init__.py
 jarvisplot/cache_store.py
 jarvisplot/cli.py
@@ -9,12 +15,6 @@ jarvisplot/core.py
 jarvisplot/data_loader.py
 jarvisplot/inner_func.py
 jarvisplot/memtrace.py
-jarvisplot.egg-info/PKG-INFO
-jarvisplot.egg-info/SOURCES.txt
-jarvisplot.egg-info/dependency_links.txt
-jarvisplot.egg-info/entry_points.txt
-jarvisplot.egg-info/requires.txt
-jarvisplot.egg-info/top_level.txt
 jarvisplot/Figure/__init__.py
 jarvisplot/Figure/adapters.py
 jarvisplot/Figure/data_pipelines.py

{jarvisplot-1.3.0/jarvisplot.egg-info → jarvisplot-1.3.1}/PKG-INFO

@@ -1,7 +1,7 @@
 Metadata-Version: 2.4
-Name: jarvisplot
-Version: 1.3.0
-Summary: JarvisPLOT: YAML-driven plotting engine
+Name: JarvisPLOT
+Version: 1.3.1
+Summary: Jarvis-PLOT: YAML-driven plotting engine
 Requires-Python: >=3.10
 Description-Content-Type: text/markdown
 Requires-Dist: loguru
@@ -18,19 +18,37 @@ Requires-Dist: scipy
 Requires-Dist: shapely
 Requires-Dist: deepmerge
 
-# JarvisPLOT
+# Jarvis-PLOT
 
-JarvisPLOT is a lightweight, Python/Matplotlib-based plotting framework developed for **Jarvis-HEP**,  
+Jarvis-PLOT is a lightweight, Python/Matplotlib-based plotting framework developed for **Jarvis-HEP**,  
 but it can also be used as a **standalone scientific plotting tool**.
 
 It provides a simple command-line interface (CLI) to generate publication-quality figures from YAML configuration files, with most layout and style decisions handled by predefined profiles and style cards.
 
 ---
 
-## Installation 
+## Installation
 
-```bash 
-pip install jarvisplot
+```bash
+pip install Jarvis-PLOT
+```
+
+The PyPI distribution name is now `Jarvis-PLOT`.
+The Python import package and entrypoint remain unchanged:
+
+```python
+import jarvisplot
+```
+
+```bash
+jplot path/to/config.yaml
+```
+
+If you have an older environment that still uses the historical package name, replace:
+
+```bash
+pip uninstall jarvisplot
+pip install Jarvis-PLOT
 ```
 
 ## Command-Line Usage
@@ -41,7 +59,7 @@ Display help information:
 jplot -h
 ```
 
-Run JarvisPLOT with one or more YAML configuration files:
+Run Jarvis-PLOT with one or more YAML configuration files:
 
 ```bash
 jplot path/to/config.yaml
@@ -56,7 +74,7 @@ jplot path/to/config.yaml --rebuild-cache
 ### Project Workdir and Cache
 
 - You can set `project.workdir` in YAML.
-- If `output.dir` is omitted, JarvisPLOT now defaults to `<workdir>/plots/`.
+- If `output.dir` is omitted, Jarvis-PLOT defaults to `<workdir>/plots/`.
 - Data cache is stored in `<workdir>/.cache/`.
 - Profiling pipelines are prebuilt once and reused from cache when source fingerprint and profile settings are unchanged.
 - Profiling uses a fast two-stage grid reduction (`pregrid` + render `bin`) for large datasets.
@@ -76,7 +94,7 @@ jplot ./bin/SUSYRun2_GEWMSSM.yaml
 
 - Figures are saved automatically to the output paths defined in the YAML configuration.
 - Common output formats include PNG and PDF (backend-dependent).
-- JarvisPLOT works in headless environments (SSH, batch jobs) without any GUI backend.
+- Jarvis-PLOT works in headless environments (SSH, batch jobs) without any GUI backend.
 
 ---
 
@@ -103,6 +121,19 @@ jplot ./bin/SUSYRun2_GEWMSSM.yaml
 ### Documentation
 [https://pengxuan-zhu-phys.github.io/Jarvis-Docs/](https://pengxuan-zhu-phys.github.io/Jarvis-Docs/)
 
+### Developer Docs
+
+Tracked architecture and maintenance docs now live in `docs/dev/`.
+
+- `docs/dev/ARCHITECTURE_OVERVIEW.md`
+- `docs/dev/DATAFLOW_ARCHITECTURE.md`
+- `docs/dev/MEMORY_OPTIMIZATION_GUIDE.md`
+- `docs/dev/DEVELOPER_RULES.md`
+- `docs/dev/MEMTRACE_SYSTEM.md`
+- `docs/dev/CONTRIBUTION_GUIDE.md`
+
+These documents describe the 1.3.0 selection-table pipeline architecture that 1.3.1 consolidates. Future work should preserve the narrow-table dataflow and must not reintroduce wide-table profiling or cache payloads.
+
 ---
 
 ## License

{jarvisplot-1.3.0 → jarvisplot-1.3.1}/README.md

@@ -1,16 +1,34 @@
-# JarvisPLOT
+# Jarvis-PLOT
 
-JarvisPLOT is a lightweight, Python/Matplotlib-based plotting framework developed for **Jarvis-HEP**,  
+Jarvis-PLOT is a lightweight, Python/Matplotlib-based plotting framework developed for **Jarvis-HEP**,  
 but it can also be used as a **standalone scientific plotting tool**.
 
 It provides a simple command-line interface (CLI) to generate publication-quality figures from YAML configuration files, with most layout and style decisions handled by predefined profiles and style cards.
 
 ---
 
-## Installation 
+## Installation
 
-```bash 
-pip install jarvisplot
+```bash
+pip install Jarvis-PLOT
+```
+
+The PyPI distribution name is now `Jarvis-PLOT`.
+The Python import package and entrypoint remain unchanged:
+
+```python
+import jarvisplot
+```
+
+```bash
+jplot path/to/config.yaml
+```
+
+If you have an older environment that still uses the historical package name, replace:
+
+```bash
+pip uninstall jarvisplot
+pip install Jarvis-PLOT
 ```
 
 ## Command-Line Usage
@@ -21,7 +39,7 @@ Display help information:
 jplot -h
 ```
 
-Run JarvisPLOT with one or more YAML configuration files:
+Run Jarvis-PLOT with one or more YAML configuration files:
 
 ```bash
 jplot path/to/config.yaml
@@ -36,7 +54,7 @@ jplot path/to/config.yaml --rebuild-cache
 ### Project Workdir and Cache
 
 - You can set `project.workdir` in YAML.
-- If `output.dir` is omitted, JarvisPLOT now defaults to `<workdir>/plots/`.
+- If `output.dir` is omitted, Jarvis-PLOT defaults to `<workdir>/plots/`.
 - Data cache is stored in `<workdir>/.cache/`.
 - Profiling pipelines are prebuilt once and reused from cache when source fingerprint and profile settings are unchanged.
 - Profiling uses a fast two-stage grid reduction (`pregrid` + render `bin`) for large datasets.
@@ -56,7 +74,7 @@ jplot ./bin/SUSYRun2_GEWMSSM.yaml
 
 - Figures are saved automatically to the output paths defined in the YAML configuration.
 - Common output formats include PNG and PDF (backend-dependent).
-- JarvisPLOT works in headless environments (SSH, batch jobs) without any GUI backend.
+- Jarvis-PLOT works in headless environments (SSH, batch jobs) without any GUI backend.
 
 ---
 
@@ -83,6 +101,19 @@ jplot ./bin/SUSYRun2_GEWMSSM.yaml
 ### Documentation
 [https://pengxuan-zhu-phys.github.io/Jarvis-Docs/](https://pengxuan-zhu-phys.github.io/Jarvis-Docs/)
 
+### Developer Docs
+
+Tracked architecture and maintenance docs now live in `docs/dev/`.
+
+- `docs/dev/ARCHITECTURE_OVERVIEW.md`
+- `docs/dev/DATAFLOW_ARCHITECTURE.md`
+- `docs/dev/MEMORY_OPTIMIZATION_GUIDE.md`
+- `docs/dev/DEVELOPER_RULES.md`
+- `docs/dev/MEMTRACE_SYSTEM.md`
+- `docs/dev/CONTRIBUTION_GUIDE.md`
+
+These documents describe the 1.3.0 selection-table pipeline architecture that 1.3.1 consolidates. Future work should preserve the narrow-table dataflow and must not reintroduce wide-table profiling or cache payloads.
+
 ---
 
 ## License

{jarvisplot-1.3.0 → jarvisplot-1.3.1}/jarvisplot/Figure/load_data.py

@@ -436,8 +436,6 @@ def profiling(df, prof, logger):
     source_z = z[source_rows]
     grid_x_keep = x_grid[keep_grid]
     grid_y_keep = y_grid[keep_grid]
-    grid_z_keep = z_grid[keep_grid]
-
     xx = None
     yy = None
     zz = None
@@ -455,7 +453,9 @@ def profiling(df, prof, logger):
         grid_out = pd.DataFrame(index=keep_grid + source_count)
         grid_out[xind] = grid_x_keep
         grid_out[yind] = grid_y_keep
-        grid_out[zind] = grid_z_keep
+        # Keep the internal sentinel for Bridson selection only; emitted grid
+        # support points should remain visually empty in downstream consumers.
+        grid_out[zind] = np.nan
         grid_out = grid_out.reindex(columns=out.columns)
         out = pd.concat([out, grid_out], axis=0, ignore_index=False)
 

{jarvisplot-1.3.0 → jarvisplot-1.3.1}/jarvisplot/Figure/preprocessor.py

@@ -320,15 +320,29 @@ class DataPreprocessor:
         if dataset is None or not hasattr(dataset, "fetch_rows_columns"):
             return df
         try:
-            row_ids = np.asarray(df[JP_ROW_IDX].to_numpy(copy=False), dtype=np.int64)
+            row_idx = pd.to_numeric(df[JP_ROW_IDX], errors="coerce")
+        except Exception:
+            return df
+        valid_mask = row_idx.notna().to_numpy(copy=False)
+        if not bool(np.any(valid_mask)):
+            return df
+        try:
+            row_ids = row_idx[valid_mask].astype(np.int64).to_numpy(copy=False)
         except Exception:
             return df
         extra = dataset.fetch_rows_columns(row_ids, missing, row_key=JP_ROW_IDX)
         if not isinstance(extra, pd.DataFrame) or extra.empty:
             return df
         out = self._clone_df(df)
+        valid_index = out.index[valid_mask]
         for col in [c for c in extra.columns if c in missing]:
-            out[col] = extra[col].to_numpy(copy=False)
+            values = extra[col].to_numpy(copy=False)
+            if int(values.shape[0]) != int(valid_index.shape[0]):
+                continue
+            if bool(np.all(valid_mask)):
+                out[col] = values
+            else:
+                out.loc[valid_index, col] = values
         return out
 
     @staticmethod

{jarvisplot-1.3.0 → jarvisplot-1.3.1}/jarvisplot/cli.py

@@ -7,7 +7,12 @@ import os, sys
 # --- version import fallback ---
 try:
     from importlib.metadata import version as _pkg_version
-    JPLOT_VERSION = _pkg_version("jarvisplot")
+    for _dist_name in ("Jarvis-PLOT", "jarvisplot"):
+        try:
+            JPLOT_VERSION = _pkg_version(_dist_name)
+            break
+        except Exception:
+            JPLOT_VERSION = "0.0.0"
 except Exception:
     JPLOT_VERSION = "0.0.0"
 
@@ -62,4 +67,3 @@ class CLI():
                     self.args.add_argument(
                         opt['long'], **kwargs
                     )
-

{jarvisplot-1.3.0 → jarvisplot-1.3.1}/pyproject.toml

@@ -3,9 +3,9 @@ requires = ["setuptools>=68", "wheel"]
 build-backend = "setuptools.build_meta"
 
 [project]
-name = "jarvisplot"
-version = "1.3.0"
-description = "JarvisPLOT: YAML-driven plotting engine"
+name = "JarvisPLOT"
+version = "1.3.1"
+description = "Jarvis-PLOT: YAML-driven plotting engine"
 readme = "README.md"
 requires-python = ">=3.10"
 dependencies = [