iris-vector-rag 0.2.0__tar.gz

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+Metadata-Version: 2.4
+Name: iris-vector-rag
+Version: 0.2.0
+Summary: Dead-simple library for building RAG applications with InterSystems IRIS
+Home-page: https://github.com/intersystems/rag-templates
+Author: InterSystems
+Author-email: InterSystems <support@intersystems.com>
+Maintainer-email: Thomas Dyar <thomas.dyar@intersystems.com>
+License: MIT
+Project-URL: Homepage, https://github.com/intersystems/rag-templates
+Project-URL: Documentation, https://github.com/intersystems/rag-templates/docs
+Project-URL: Repository, https://github.com/intersystems/rag-templates
+Project-URL: Bug Tracker, https://github.com/intersystems/rag-templates/issues
+Project-URL: Changelog, https://github.com/intersystems/rag-templates/blob/main/CHANGELOG.md
+Keywords: rag,retrieval-augmented-generation,intersystems,iris,vector-database,llm,ai,machine-learning,nlp,embeddings,semantic-search,mcp,model-context-protocol
+Classifier: Development Status :: 4 - Beta
+Classifier: Intended Audience :: Developers
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
+Classifier: Topic :: Software Development :: Libraries :: Python Modules
+Classifier: Topic :: Database
+Classifier: Topic :: Text Processing :: Linguistic
+Requires-Python: >=3.8
+Description-Content-Type: text/markdown
+Requires-Dist: openai>=1.0.0
+Requires-Dist: anthropic>=0.25.0
+Requires-Dist: sentence-transformers>=2.2.0
+Requires-Dist: numpy>=1.21.0
+Requires-Dist: pandas>=1.3.0
+Requires-Dist: pyyaml>=6.0
+Requires-Dist: requests>=2.28.0
+Requires-Dist: tqdm>=4.64.0
+Requires-Dist: typing-extensions>=4.0.0
+Requires-Dist: psutil>=7.0.0
+Requires-Dist: intersystems-irispython>=5.1.2
+Requires-Dist: langchain-openai>=0.3.24
+Requires-Dist: langchain>=0.3.25
+Requires-Dist: python-dotenv>=1.1.0
+Requires-Dist: matplotlib>=3.10.3
+Requires-Dist: ragas>=0.2.15
+Requires-Dist: seaborn>=0.13.2
+Requires-Dist: plotly>=6.1.2
+Requires-Dist: jaydebeapi>=1.2.3
+Requires-Dist: docker>=6.1.3
+Requires-Dist: tiktoken>=0.5.0
+Provides-Extra: dev
+Requires-Dist: uv>=0.1.0; extra == "dev"
+Requires-Dist: pytest>=7.0.0; extra == "dev"
+Requires-Dist: pytest-asyncio>=0.21.0; extra == "dev"
+Requires-Dist: pytest-cov>=4.0.0; extra == "dev"
+Requires-Dist: pytest-dotenv>=0.5.2; extra == "dev"
+Requires-Dist: black>=23.0.0; extra == "dev"
+Requires-Dist: isort>=5.12.0; extra == "dev"
+Requires-Dist: flake8>=6.0.0; extra == "dev"
+Requires-Dist: mypy>=1.0.0; extra == "dev"
+Requires-Dist: pre-commit>=3.0.0; extra == "dev"
+Requires-Dist: build>=0.10.0; extra == "dev"
+Requires-Dist: twine>=4.0.0; extra == "dev"
+Provides-Extra: mcp
+Requires-Dist: mcp>=0.1.0; extra == "mcp"
+Requires-Dist: fastapi>=0.100.0; extra == "mcp"
+Requires-Dist: uvicorn>=0.23.0; extra == "mcp"
+Requires-Dist: websockets>=11.0.0; extra == "mcp"
+Provides-Extra: api
+Requires-Dist: fastapi>=0.104.0; extra == "api"
+Requires-Dist: uvicorn[standard]>=0.24.0; extra == "api"
+Requires-Dist: python-multipart>=0.0.6; extra == "api"
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+Requires-Dist: python-jose[cryptography]>=3.3.0; extra == "api"
+Provides-Extra: all
+Requires-Dist: uv>=0.1.0; extra == "all"
+Requires-Dist: pytest>=7.0.0; extra == "all"
+Requires-Dist: pytest-asyncio>=0.21.0; extra == "all"
+Requires-Dist: pytest-cov>=4.0.0; extra == "all"
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+Requires-Dist: twine>=4.0.0; extra == "all"
+Requires-Dist: mcp>=0.1.0; extra == "all"
+Requires-Dist: fastapi>=0.104.0; extra == "all"
+Requires-Dist: uvicorn[standard]>=0.24.0; extra == "all"
+Requires-Dist: websockets>=12.0; extra == "all"
+Requires-Dist: python-multipart>=0.0.6; extra == "all"
+Requires-Dist: redis>=5.0.0; extra == "all"
+Requires-Dist: bcrypt>=4.0.0; extra == "all"
+Requires-Dist: python-jose[cryptography]>=3.3.0; extra == "all"
+Dynamic: author
+Dynamic: home-page
+Dynamic: requires-python
+
+# IRIS Vector RAG Templates
+
+**Production-ready Retrieval-Augmented Generation (RAG) pipelines powered by InterSystems IRIS Vector Search**
+
+Build intelligent applications that combine large language models with your enterprise data using battle-tested RAG patterns and native vector search capabilities.
+
+[![License: MIT](https://img.shields.io/badge/License-MIT-blue.svg)](LICENSE)
+[![Python 3.11+](https://img.shields.io/badge/python-3.11+-blue.svg)](https://www.python.org/downloads/)
+[![InterSystems IRIS](https://img.shields.io/badge/IRIS-2024.1+-purple.svg)](https://www.intersystems.com/products/intersystems-iris/)
+
+## Why IRIS Vector RAG?
+
+🚀 **Production-Ready** - Six proven RAG architectures ready to deploy, not research prototypes
+
+⚡ **Blazing Fast** - Native IRIS vector search with HNSW indexing, no external vector databases needed
+
+🔧 **Unified API** - Swap between RAG strategies with a single line of code
+
+📊 **Enterprise-Grade** - ACID transactions, connection pooling, and horizontal scaling built-in
+
+🎯 **100% Compatible** - Works seamlessly with LangChain, RAGAS, and your existing ML stack
+
+🧪 **Fully Validated** - Comprehensive test suite with automated contract validation
+
+## Available RAG Pipelines
+
+| Pipeline Type | Use Case | Retrieval Method | When to Use |
+|---------------|----------|------------------|-------------|
+| **basic** | Standard retrieval | Vector similarity | General Q&A, getting started, baseline comparisons |
+| **basic_rerank** | Improved precision | Vector + cross-encoder reranking | Higher accuracy requirements, legal/medical domains |
+| **crag** | Self-correcting | Vector + evaluation + web search fallback | Dynamic knowledge, fact-checking, current events |
+| **graphrag** | Knowledge graphs | Vector + text + graph + RRF fusion | Complex entity relationships, research, medical knowledge |
+| **multi_query_rrf** | Multi-perspective | Query expansion + reciprocal rank fusion | Complex queries, comprehensive coverage needed |
+| **pylate_colbert** | Fine-grained matching | ColBERT late interaction embeddings | Nuanced semantic understanding, high precision |
+
+## Quick Start
+
+### 1. Install
+
+```bash
+# Clone repository
+git clone https://github.com/intersystems-community/iris-rag-templates.git
+cd iris-rag-templates
+
+# Setup environment (requires uv package manager)
+make setup-env
+make install
+source .venv/bin/activate
+```
+
+### 2. Start IRIS Database
+
+```bash
+# Start IRIS with Docker Compose
+docker-compose up -d
+
+# Initialize database schema
+make setup-db
+
+# Optional: Load sample medical data
+make load-data
+```
+
+### 3. Configure API Keys
+
+```bash
+cat > .env << 'EOF'
+OPENAI_API_KEY=your-key-here
+ANTHROPIC_API_KEY=your-key-here  # Optional, for Claude models
+IRIS_HOST=localhost
+IRIS_PORT=1972
+IRIS_NAMESPACE=USER
+IRIS_USERNAME=_SYSTEM
+IRIS_PASSWORD=SYS
+EOF
+```
+
+### 4. Run Your First Query
+
+```python
+from iris_rag import create_pipeline
+
+# Create pipeline with automatic validation
+pipeline = create_pipeline('basic', validate_requirements=True)
+
+# Load your documents
+from iris_rag.core.models import Document
+
+docs = [
+    Document(
+        page_content="RAG combines retrieval with generation for accurate AI responses.",
+        metadata={"source": "rag_basics.pdf", "page": 1}
+    ),
+    Document(
+        page_content="Vector search finds semantically similar content using embeddings.",
+        metadata={"source": "vector_search.pdf", "page": 5}
+    )
+]
+
+pipeline.load_documents(documents=docs)
+
+# Query with LLM-generated answer
+result = pipeline.query(
+    query="What is RAG?",
+    top_k=5,
+    generate_answer=True
+)
+
+print(f"Answer: {result['answer']}")
+print(f"Sources: {result['sources']}")
+print(f"Retrieved: {len(result['retrieved_documents'])} documents")
+```
+
+## Unified API Across All Pipelines
+
+**Switch RAG strategies with one line** - all pipelines share the same interface:
+
+```python
+from iris_rag import create_pipeline
+
+# Try different strategies instantly
+for pipeline_type in ['basic', 'basic_rerank', 'crag', 'multi_query_rrf', 'graphrag']:
+    pipeline = create_pipeline(pipeline_type)
+
+    result = pipeline.query(
+        query="What are the latest cancer treatment approaches?",
+        top_k=5,
+        generate_answer=True
+    )
+
+    print(f"\n{pipeline_type.upper()}:")
+    print(f"  Answer: {result['answer'][:150]}...")
+    print(f"  Retrieved: {len(result['retrieved_documents'])} docs")
+    print(f"  Confidence: {result['metadata'].get('confidence', 'N/A')}")
+```
+
+### Standardized Response Format
+
+**100% LangChain & RAGAS compatible** responses:
+
+```python
+{
+    "query": "What is diabetes?",
+    "answer": "Diabetes is a chronic metabolic condition...",  # LLM answer
+    "retrieved_documents": [Document(...)],                   # LangChain Documents
+    "contexts": ["context 1", "context 2"],                   # RAGAS contexts
+    "sources": ["medical.pdf p.12", "diabetes.pdf p.3"],     # Source citations
+    "execution_time": 0.523,
+    "metadata": {
+        "num_retrieved": 5,
+        "pipeline_type": "basic",
+        "retrieval_method": "vector",
+        "generated_answer": True,
+        "processing_time": 0.523
+    }
+}
+```
+
+## Pipeline Deep Dives
+
+### CRAG: Self-Correcting Retrieval
+
+Automatically evaluates retrieval quality and falls back to web search when needed:
+
+```python
+from iris_rag import create_pipeline
+
+pipeline = create_pipeline('crag')
+
+# CRAG evaluates retrieved documents and uses web search if quality is low
+result = pipeline.query(
+    query="What happened in the 2024 Olympics opening ceremony?",
+    top_k=5,
+    generate_answer=True
+)
+
+# Check which retrieval method was used
+print(f"Method: {result['metadata']['retrieval_method']}")  # 'vector' or 'web_search'
+print(f"Confidence: {result['metadata']['confidence']}")     # 0.0 - 1.0
+```
+
+### HybridGraphRAG: Multi-Modal Search
+
+Combines vector search, text search, and knowledge graph traversal:
+
+```python
+pipeline = create_pipeline('graphrag')
+
+result = pipeline.query(
+    query_text="cancer treatment targets",
+    method="rrf",        # Reciprocal Rank Fusion across all methods
+    vector_k=30,         # Top 30 from vector search
+    text_k=30,           # Top 30 from text search
+    graph_k=10,          # Top 10 from knowledge graph
+    generate_answer=True
+)
+
+# Rich metadata includes entities and relationships
+print(f"Entities: {result['metadata']['entities']}")
+print(f"Relationships: {result['metadata']['relationships']}")
+print(f"Graph depth: {result['metadata']['graph_depth']}")
+```
+
+### MultiQueryRRF: Multi-Perspective Retrieval
+
+Expands queries into multiple perspectives and fuses results:
+
+```python
+pipeline = create_pipeline('multi_query_rrf')
+
+# Automatically generates query variations and combines results
+result = pipeline.query(
+    query="How does machine learning work?",
+    top_k=10,
+    generate_answer=True
+)
+
+# See the generated query variations
+print(f"Query variations: {result['metadata']['generated_queries']}")
+print(f"Fusion method: {result['metadata']['fusion_method']}")  # 'rrf'
+```
+
+## Enterprise Features
+
+### Production-Ready Database
+
+**IRIS provides everything you need in one database:**
+
+- ✅ Native vector search (no external vector DB needed)
+- ✅ ACID transactions (your data is safe)
+- ✅ SQL + NoSQL + Vector in one platform
+- ✅ Horizontal scaling and clustering
+- ✅ Enterprise-grade security and compliance
+
+### Connection Pooling
+
+**Automatic concurrency management:**
+
+```python
+from iris_rag.storage import IRISVectorStore
+
+# Connection pool handles concurrency automatically
+store = IRISVectorStore()
+
+# Safe for multi-threaded applications
+# Pool manages connections, no manual management needed
+```
+
+### Automatic Schema Management
+
+**Database schema created and migrated automatically:**
+
+```python
+pipeline = create_pipeline('basic', validate_requirements=True)
+# ✅ Checks database connection
+# ✅ Validates schema exists
+# ✅ Migrates to latest version if needed
+# ✅ Reports validation results
+```
+
+### RAGAS Evaluation Built-In
+
+**Measure your RAG pipeline performance:**
+
+```bash
+# Evaluate all pipelines on your data
+make test-ragas-sample
+
+# Generates detailed metrics:
+# - Answer Correctness
+# - Faithfulness
+# - Context Precision
+# - Context Recall
+# - Answer Relevance
+```
+
+## Model Context Protocol (MCP) Support
+
+**Expose RAG pipelines as MCP tools** for use with Claude Desktop and other MCP clients:
+
+```bash
+# Start MCP server
+python -m iris_rag.mcp
+
+# Available MCP tools:
+# - rag_basic
+# - rag_basic_rerank
+# - rag_crag
+# - rag_multi_query_rrf
+# - rag_graphrag
+# - rag_hybrid_graphrag
+# - health_check
+# - list_tools
+```
+
+Configure in Claude Desktop:
+
+```json
+{
+  "mcpServers": {
+    "iris-rag": {
+      "command": "python",
+      "args": ["-m", "iris_rag.mcp"],
+      "env": {
+        "OPENAI_API_KEY": "your-key"
+      }
+    }
+  }
+}
+```
+
+## Architecture Overview
+
+```
+iris_rag/
+├── core/              # Abstract base classes (RAGPipeline, VectorStore)
+├── pipelines/         # Pipeline implementations
+│   ├── basic.py                    # BasicRAG
+│   ├── basic_rerank.py             # Reranking pipeline
+│   ├── crag.py                     # Corrective RAG
+│   ├── multi_query_rrf.py          # Multi-query with RRF
+│   ├── graphrag.py                 # Graph-based RAG
+│   └── hybrid_graphrag.py          # Hybrid multi-modal
+├── storage/           # Vector store implementations
+│   ├── vector_store_iris.py        # IRIS vector store
+│   └── schema_manager.py           # Schema management
+├── mcp/              # Model Context Protocol server
+├── api/              # Production REST API
+├── services/         # Business logic (entity extraction, etc.)
+├── config/           # Configuration management
+└── validation/       # Pipeline contract validation
+```
+
+## Documentation
+
+📚 **Comprehensive documentation for every use case:**
+
+- **[User Guide](docs/USER_GUIDE.md)** - Complete installation and usage
+- **[API Reference](docs/API_REFERENCE.md)** - Detailed API documentation
+- **[Pipeline Guide](docs/PIPELINE_GUIDE.md)** - When to use each pipeline
+- **[MCP Integration](docs/MCP_INTEGRATION.md)** - Model Context Protocol setup
+- **[Production Deployment](docs/PRODUCTION_DEPLOYMENT.md)** - Deployment checklist
+- **[Development Guide](docs/DEVELOPMENT.md)** - Contributing and testing
+
+## Performance Benchmarks
+
+**Native IRIS vector search delivers:**
+
+- 🚀 **50-100x faster** than traditional solutions for hybrid search
+- ⚡ **Sub-second queries** on millions of documents
+- 📊 **Linear scaling** with IRIS clustering
+- 💾 **10x less memory** than external vector databases
+
+## Testing & Quality
+
+```bash
+# Run comprehensive test suite
+make test
+
+# Test specific categories
+pytest tests/unit/           # Unit tests (fast)
+pytest tests/integration/    # Integration tests (with IRIS)
+pytest tests/contract/       # API contract validation
+
+# Run with coverage
+pytest --cov=iris_rag --cov-report=html
+```
+
+**For detailed testing documentation**, see [DEVELOPMENT.md](docs/DEVELOPMENT.md)
+
+## Research & References
+
+This implementation is based on peer-reviewed research:
+
+- **Basic RAG**: Lewis et al., [Retrieval-Augmented Generation for Knowledge-Intensive NLP Tasks](https://arxiv.org/abs/2005.11401), NeurIPS 2020
+- **CRAG**: Yan et al., [Corrective Retrieval Augmented Generation](https://arxiv.org/abs/2401.15884), arXiv 2024
+- **GraphRAG**: Edge et al., [From Local to Global: A Graph RAG Approach](https://arxiv.org/abs/2404.16130), arXiv 2024
+- **ColBERT**: Khattab & Zaharia, [ColBERT: Efficient and Effective Passage Search](https://arxiv.org/abs/2004.12832), SIGIR 2020
+
+## Contributing
+
+We welcome contributions! See [CONTRIBUTING.md](CONTRIBUTING.md) for:
+
+- Development setup
+- Testing guidelines
+- Code style and standards
+- Pull request process
+
+## Community & Support
+
+- 💬 **Discussions**: [GitHub Discussions](https://github.com/intersystems-community/iris-rag-templates/discussions)
+- 🐛 **Issues**: [GitHub Issues](https://github.com/intersystems-community/iris-rag-templates/issues)
+- 📖 **Documentation**: [Full Documentation](docs/)
+- 🏢 **Enterprise Support**: [InterSystems Support](https://www.intersystems.com/support/)
+
+## License
+
+MIT License - see [LICENSE](LICENSE) for details.
+
+---
+
+**Built with ❤️ by the InterSystems Community**
+
+*Powering intelligent applications with enterprise-grade RAG*