iplotx 0.6.3__tar.gz → 0.6.5__tar.gz

{iplotx-0.6.3 → iplotx-0.6.5}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: iplotx
-Version: 0.6.3
+Version: 0.6.5
 Summary: Plot networkx from igraph and networkx.
 Project-URL: Homepage, https://github.com/fabilab/iplotx
 Project-URL: Documentation, https://readthedocs.org/iplotx

iplotx-0.6.5/docs/source/sg_execution_times.rst

@@ -0,0 +1,223 @@
+
+:orphan:
+
+.. _sphx_glr_sg_execution_times:
+
+
+Computation times
+=================
+**00:00.060** total execution time for 63 files **from all galleries**:
+
+.. container::
+
+  .. raw:: html
+
+    <style scoped>
+    <link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
+    <link href="https://cdn.datatables.net/1.13.6/css/dataTables.bootstrap5.min.css" rel="stylesheet" />
+    </style>
+    <script src="https://code.jquery.com/jquery-3.7.0.js"></script>
+    <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+    <script src="https://cdn.datatables.net/1.13.6/js/dataTables.bootstrap5.min.js"></script>
+    <script type="text/javascript" class="init">
+    $(document).ready( function () {
+        $('table.sg-datatable').DataTable({order: [[1, 'desc']]});
+    } );
+    </script>
+
+  .. list-table::
+   :header-rows: 1
+   :class: table table-striped sg-datatable
+
+   * - Example
+     - Time
+     - Mem (MB)
+   * - :ref:`sphx_glr_gallery_other_plot_train.py` (``../../gallery/other/plot_train.py``)
+     - 00:00.060
+     - 0.0
+   * - :ref:`sphx_glr_gallery_biology_plot_antibody_clone.py` (``../../gallery/biology/plot_antibody_clone.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_biology_plot_pollinators.py` (``../../gallery/biology/plot_pollinators.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_biology_plot_ppi.py` (``../../gallery/biology/plot_ppi.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_animation.py` (``../../gallery/networks/plot_animation.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_arrowlawn.py` (``../../gallery/networks/plot_arrowlawn.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_arrows.py` (``../../gallery/networks/plot_arrows.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_basic.py` (``../../gallery/networks/plot_basic.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_big_curves.py` (``../../gallery/networks/plot_big_curves.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_chess_masters.py` (``../../gallery/networks/plot_chess_masters.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_cliques.py` (``../../gallery/networks/plot_cliques.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_cluster_layout.py` (``../../gallery/networks/plot_cluster_layout.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_company_structure.py` (``../../gallery/networks/plot_company_structure.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_complex.py` (``../../gallery/networks/plot_complex.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_dag.py` (``../../gallery/networks/plot_dag.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_directed.py` (``../../gallery/networks/plot_directed.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_edgepadding.py` (``../../gallery/networks/plot_edgepadding.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_edit_artists.py` (``../../gallery/networks/plot_edit_artists.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_elements.py` (``../../gallery/networks/plot_elements.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_feedbacks.py` (``../../gallery/networks/plot_feedbacks.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_four_grids.py` (``../../gallery/networks/plot_four_grids.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_grouping.py` (``../../gallery/networks/plot_grouping.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_halfarrows.py` (``../../gallery/networks/plot_halfarrows.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_house.py` (``../../gallery/networks/plot_house.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_knuth_miles.py` (``../../gallery/networks/plot_knuth_miles.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_labels_and_colors.py` (``../../gallery/networks/plot_labels_and_colors.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_loops.py` (``../../gallery/networks/plot_loops.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_max_bipartite_matching.py` (``../../gallery/networks/plot_max_bipartite_matching.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_minimum_spanning_trees.py` (``../../gallery/networks/plot_minimum_spanning_trees.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_mouse_hover.py` (``../../gallery/networks/plot_mouse_hover.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_multipartite_layout.py` (``../../gallery/networks/plot_multipartite_layout.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_multistyle.py` (``../../gallery/networks/plot_multistyle.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_parallel_igraph_networkx.py` (``../../gallery/networks/plot_parallel_igraph_networkx.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_ports.py` (``../../gallery/networks/plot_ports.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_redblack.py` (``../../gallery/networks/plot_redblack.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_shortest_path.py` (``../../gallery/networks/plot_shortest_path.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_simple_networkx.py` (``../../gallery/networks/plot_simple_networkx.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_simple_path.py` (``../../gallery/networks/plot_simple_path.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_simplenetworkdataprovider.py` (``../../gallery/networks/plot_simplenetworkdataprovider.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_style.py` (``../../gallery/networks/plot_style.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_tension.py` (``../../gallery/networks/plot_tension.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_traveling_salesman.py` (``../../gallery/networks/plot_traveling_salesman.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_vertexmarkers.py` (``../../gallery/networks/plot_vertexmarkers.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_voronoi.py` (``../../gallery/networks/plot_voronoi.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_waypoints.py` (``../../gallery/networks/plot_waypoints.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_networks_plot_with_colorbar.py` (``../../gallery/networks/plot_with_colorbar.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_tree_plot_angular_waypoints.py` (``../../gallery/tree/plot_angular_waypoints.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_tree_plot_biopython_tree.py` (``../../gallery/tree/plot_biopython_tree.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_tree_plot_cladeedges.py` (``../../gallery/tree/plot_cladeedges.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_tree_plot_cogent3_layouts.py` (``../../gallery/tree/plot_cogent3_layouts.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_tree_plot_cogent3_tree.py` (``../../gallery/tree/plot_cogent3_tree.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_tree_plot_elements_tree.py` (``../../gallery/tree/plot_elements_tree.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_tree_plot_ete4.py` (``../../gallery/tree/plot_ete4.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_tree_plot_leafedges.py` (``../../gallery/tree/plot_leafedges.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_tree_plot_leafedges_and_cascades.py` (``../../gallery/tree/plot_leafedges_and_cascades.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_tree_plot_simpletreedataprovider.py` (``../../gallery/tree/plot_simpletreedataprovider.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_tree_plot_skbio_tree.py` (``../../gallery/tree/plot_skbio_tree.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_tree_plot_split_edges.py` (``../../gallery/tree/plot_split_edges.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_tree_plot_style_tree.py` (``../../gallery/tree/plot_style_tree.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_tree_plot_support.py` (``../../gallery/tree/plot_support.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_tree_plot_tree_node_background.py` (``../../gallery/tree/plot_tree_node_background.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_tree_plot_tree_style_clades.py` (``../../gallery/tree/plot_tree_style_clades.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_gallery_tree_plot_trees_of_trees.py` (``../../gallery/tree/plot_trees_of_trees.py``)
+     - 00:00.000
+     - 0.0

{iplotx-0.6.3 → iplotx-0.6.5}/gallery/GALLERY_HEADER.rst

@@ -1,6 +1,3 @@
 Gallery
 =======
-This is a gallery of examples that demonstrate the capabilities of the `iplotx` library.
-
-Networks
-++++++++
+This is a gallery of examples that demonstrate the capabilities of the ``iplotx`` library.

iplotx-0.6.5/gallery/biology/GALLERY_HEADER.rst

@@ -0,0 +1,5 @@
+Biology
++++++++
+Examples showcasing how to use ``iplotx`` to visualise biolotgical and ecological networks.
+Examples for **trees** specifically, including phylogenetic trees, are found in the tree
+gallery section.