in-silico-cancer-cell 0.2.3__tar.gz → 0.2.5__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/Cargo.lock +386 -387
- in_silico_cancer_cell-0.2.5/Cargo.toml +46 -0
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/PKG-INFO +10 -5
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/README.md +2 -2
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/pyproject.toml +10 -30
- in_silico_cancer_cell-0.2.3/python/in_silico_cancer_cell/plot.py → in_silico_cancer_cell-0.2.5/python/in_silico_cancer_cell/fit.py +32 -36
- in_silico_cancer_cell-0.2.5/python/in_silico_cancer_cell/plot.py +42 -0
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/src/cell.rs +83 -22
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/src/channels/base.rs +11 -5
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/src/constants.rs +3 -2
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/src/lib.rs +1 -0
- in_silico_cancer_cell-0.2.5/src/main.rs +180 -0
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/src/optimisation.rs +19 -13
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/src/patchclampdata.rs +23 -5
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/src/pulseprotocol.rs +12 -0
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/src/utils.rs +11 -0
- in_silico_cancer_cell-0.2.3/.editorconfig +0 -13
- in_silico_cancer_cell-0.2.3/.github/workflows/main.yml +0 -48
- in_silico_cancer_cell-0.2.3/.github/workflows/maturin.yml +0 -136
- in_silico_cancer_cell-0.2.3/.gitignore +0 -24
- in_silico_cancer_cell-0.2.3/.pre-commit-config.yaml +0 -55
- in_silico_cancer_cell-0.2.3/.rustfmt.toml +0 -3
- in_silico_cancer_cell-0.2.3/.vscode/extensions.json +0 -4
- in_silico_cancer_cell-0.2.3/.vscode/launch.json +0 -20
- in_silico_cancer_cell-0.2.3/Cargo.toml +0 -45
- in_silico_cancer_cell-0.2.3/astro.config.mjs +0 -13
- in_silico_cancer_cell-0.2.3/data/experimental/mG0_1.mat +0 -0
- in_silico_cancer_cell-0.2.3/data/experimental/mG0_10.mat +0 -0
- in_silico_cancer_cell-0.2.3/data/experimental/mG0_11.mat +0 -0
- in_silico_cancer_cell-0.2.3/data/experimental/mG0_2.mat +0 -0
- in_silico_cancer_cell-0.2.3/data/experimental/mG0_3.mat +0 -0
- in_silico_cancer_cell-0.2.3/data/experimental/mG0_4.mat +0 -0
- in_silico_cancer_cell-0.2.3/data/experimental/mG0_5.mat +0 -0
- in_silico_cancer_cell-0.2.3/data/experimental/mG0_6.mat +0 -0
- in_silico_cancer_cell-0.2.3/data/experimental/mG0_7.mat +0 -0
- in_silico_cancer_cell-0.2.3/data/experimental/mG0_8.mat +0 -0
- in_silico_cancer_cell-0.2.3/data/experimental/mG0_9.mat +0 -0
- in_silico_cancer_cell-0.2.3/data/experimental/mG1_1.mat +0 -0
- in_silico_cancer_cell-0.2.3/data/experimental/mG1_2.mat +0 -0
- in_silico_cancer_cell-0.2.3/data/experimental/mG1_3.mat +0 -0
- in_silico_cancer_cell-0.2.3/data/experimental/mG1_4.mat +0 -0
- in_silico_cancer_cell-0.2.3/data/experimental/mG1_5.mat +0 -0
- in_silico_cancer_cell-0.2.3/data/experimental/patch_clamp_data.mat +0 -0
- in_silico_cancer_cell-0.2.3/data/experimental/time_vector_measure.mat +0 -0
- in_silico_cancer_cell-0.2.3/data/provision/patch_clamp_data_activation.mat +0 -0
- in_silico_cancer_cell-0.2.3/data/provision/patch_clamp_data_deactivation.mat +0 -0
- in_silico_cancer_cell-0.2.3/data/provision/patch_clamp_data_ramp.mat +0 -0
- in_silico_cancer_cell-0.2.3/figures/above-the-fold-screenshot.png +0 -0
- in_silico_cancer_cell-0.2.3/figures/results/data-vs-simulation.pdf +0 -0
- in_silico_cancer_cell-0.2.3/figures/results/full-simulation-current.pdf +0 -0
- in_silico_cancer_cell-0.2.3/figures/results/simulation-error.pdf +0 -0
- in_silico_cancer_cell-0.2.3/figures/results/voltage-protocol.pdf +0 -0
- in_silico_cancer_cell-0.2.3/figures/screenshot.png +0 -0
- in_silico_cancer_cell-0.2.3/literature/1998-potassium-channel.pdf +0 -0
- in_silico_cancer_cell-0.2.3/literature/2021-A549-model.pdf +44 -19184
- in_silico_cancer_cell-0.2.3/literature/2024-A549-calcium-extension.pdf +54 -18079
- in_silico_cancer_cell-0.2.3/literature/sources.bib +0 -40
- in_silico_cancer_cell-0.2.3/matlab/A549 in-silico main.m +0 -99
- in_silico_cancer_cell-0.2.3/matlab/CLC_2.m +0 -43
- in_silico_cancer_cell-0.2.3/matlab/CRAC1.m +0 -22
- in_silico_cancer_cell-0.2.3/matlab/KCa_1_1.m +0 -71
- in_silico_cancer_cell-0.2.3/matlab/KCa_3_1.m +0 -44
- in_silico_cancer_cell-0.2.3/matlab/Kv_1_3.m +0 -48
- in_silico_cancer_cell-0.2.3/matlab/Kv_3_1.m +0 -46
- in_silico_cancer_cell-0.2.3/matlab/Kv_3_4.m +0 -47
- in_silico_cancer_cell-0.2.3/matlab/Kv_7_1.m +0 -39
- in_silico_cancer_cell-0.2.3/matlab/P_CRAC1.m +0 -10
- in_silico_cancer_cell-0.2.3/matlab/TASK1.m +0 -40
- in_silico_cancer_cell-0.2.3/matlab/TRPV_3.m +0 -21
- in_silico_cancer_cell-0.2.3/matlab/load_patch_clamp_data.m +0 -162
- in_silico_cancer_cell-0.2.3/matlab/model_evaluation.m +0 -335
- in_silico_cancer_cell-0.2.3/matlab/optimization.m +0 -200
- in_silico_cancer_cell-0.2.3/matlab/simulate_pulse_protocol.m +0 -79
- in_silico_cancer_cell-0.2.3/matlab/simulate_pulse_protocol_TRPC.m +0 -31
- in_silico_cancer_cell-0.2.3/matlab/simulate_pulse_protocol_TRPV.m +0 -40
- in_silico_cancer_cell-0.2.3/package.json +0 -26
- in_silico_cancer_cell-0.2.3/poetry.lock +0 -881
- in_silico_cancer_cell-0.2.3/public/favicon.svg +0 -9
- in_silico_cancer_cell-0.2.3/python/tests/test_all.py +0 -32
- in_silico_cancer_cell-0.2.3/report/.gitignore +0 -29
- in_silico_cancer_cell-0.2.3/report/graphics/sample-figure1.png +0 -0
- in_silico_cancer_cell-0.2.3/report/logos/Open_Access.eps +0 -0
- in_silico_cancer_cell-0.2.3/report/logos/Open_Access.pdf +0 -0
- in_silico_cancer_cell-0.2.3/report/logos/by.eps +0 -0
- in_silico_cancer_cell-0.2.3/report/logos/by.pdf +10 -6757
- in_silico_cancer_cell-0.2.3/report/logos/dg-degruyter.eps +0 -8284
- in_silico_cancer_cell-0.2.3/report/logos/dg-degruyter.pdf +0 -0
- in_silico_cancer_cell-0.2.3/report/macros.tex +0 -11
- in_silico_cancer_cell-0.2.3/report/report.pdf +0 -0
- in_silico_cancer_cell-0.2.3/report/report.tex +0 -202
- in_silico_cancer_cell-0.2.3/rust-toolchain.toml +0 -2
- in_silico_cancer_cell-0.2.3/src/main.rs +0 -108
- in_silico_cancer_cell-0.2.3/tasks.py +0 -33
- in_silico_cancer_cell-0.2.3/yarn.lock +0 -4036
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/python/in_silico_cancer_cell/__init__.py +0 -0
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/python/in_silico_cancer_cell/_in_rusty_silico.pyi +0 -0
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/python/in_silico_cancer_cell/py.typed +0 -0
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/python/in_silico_cancer_cell/utils.py +0 -0
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/src/channels/clc2.rs +0 -0
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/src/channels/crac1.rs +0 -0
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/src/channels/custom.rs +0 -0
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/src/channels/kca11.rs +0 -0
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/src/channels/kca31.rs +0 -0
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/src/channels/kv13.rs +0 -0
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/src/channels/kv31.rs +0 -0
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/src/channels/kv34.rs +0 -0
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/src/channels/kv71.rs +0 -0
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/src/channels/mod.rs +0 -0
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/src/channels/task1.rs +0 -0
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/src/channels/trpc6.rs +0 -0
- {in_silico_cancer_cell-0.2.3 → in_silico_cancer_cell-0.2.5}/src/channels/trpv3.rs +0 -0
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