impy-array 2.5.0__tar.gz → 2.5.1__tar.gz

{impy_array-2.5.0 → impy_array-2.5.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: impy-array
-Version: 2.5.0
+Version: 2.5.1
 Summary: Speed up coding/extending image analysis in Python.
 Project-URL: Download, https://github.com/hanjinliu/impy
 Author-email: Hanjin Liu <liuhanjin-sc@g.ecc.u-tokyo.ac.jp>

{impy_array-2.5.0 → impy_array-2.5.1}/impy/__init__.py

@@ -1,4 +1,4 @@
-__version__ = "2.5.0"
+__version__ = "2.5.1"
 __author__ = "Hanjin Liu"
 __email__ = "liuhanjin-sc@g.ecc.u-tokyo.ac.jp"
 

{impy_array-2.5.0 → impy_array-2.5.1}/impy/arrays/imgarray.py

@@ -4111,8 +4111,6 @@ class ImgArray(LabeledArray):
 
         if along is None:
             along = find_first_appeared("tpzcia", include=self.axes)
-        elif len(along) != 1:
-            raise ValueError("`along` must be single character.")
         if not isinstance(upsample_factor, int):
             raise TypeError(f"upsample-factor must be integer but got {type(upsample_factor)}")
         if max_shift is not None:
@@ -4122,7 +4120,7 @@ class ImgArray(LabeledArray):
         c_axes = complement_axes(along, self.axes)
         last_img = None
         img_fft = self.fft(shift=False, dims=c_axes)
-        for i, (_, img) in enumerate(img_fft.iter(along)):
+        for i, (_, img) in enumerate(img_fft.iter([along])):
             img = xp.asarray(img)
             if last_img is not None:
                 result[i] = xp.asnumpy(
@@ -4198,8 +4196,6 @@ class ImgArray(LabeledArray):
 
         if along is None:
             along = find_first_appeared("tpzcia", include=self.axes, exclude=dims)
-        elif len(along) != 1:
-            raise ValueError("`along` must be single character.")
 
         if shift is None:
             # determine 'ref'

{impy_array-2.5.0 → impy_array-2.5.1}/impy/arrays/lazy.py

@@ -776,12 +776,13 @@ class LazyImgArray(AxesMixin):
         sigma: nDFloat = 1.0,
         *,
         dims: Dims = None,
+        fourier: bool = False,
         update: bool = False
     ) -> LazyImgArray:
         c_axes = complement_axes(dims, self.axes)
         depth = _ceilint(sigma*4)
         return self._apply_map_overlap(
-            xp.ndi.gaussian_filter,
+            _filters.gaussian_filter_fourier if fourier else _filters.gaussian_filter,
             c_axes=c_axes,
             depth=depth,
             kwargs=dict(sigma=sigma),
@@ -795,13 +796,14 @@ class LazyImgArray(AxesMixin):
         low_sigma: nDFloat = 1.0,
         high_sigma: nDFloat = 2.0,
         *,
+        fourier: bool = False,
         dims: Dims = None,
         update: bool = False
     ) -> LazyImgArray:
         c_axes = complement_axes(dims, self.axes)
         depth = _ceilint(high_sigma*4)
         return self._apply_map_overlap(
-            _filters.dog_filter,
+            _filters.dog_filter_fourier if fourier else _filters.dog_filter,
             c_axes=c_axes,
             depth=depth,
             kwargs=dict(low_sigma=low_sigma, high_sigma=high_sigma),
@@ -1317,8 +1319,6 @@ class LazyImgArray(AxesMixin):
     def track_drift(self, along: str = None, upsample_factor: int = 10) -> DaskArray:
         if along is None:
             along = find_first_appeared("tpzc<i", include=self.axes)
-        elif len(along) != 1:
-            raise ValueError("`along` must be single character.")
 
         dims = complement_axes(along, self.axes)
         chunks = switch_slice(dims, self.axes, ifin=self.shape, ifnot=1)
@@ -1370,8 +1370,6 @@ class LazyImgArray(AxesMixin):
     ) -> LazyImgArray:
         if along is None:
             along = find_first_appeared("tpzcia", include=self.axes, exclude=dims)
-        elif len(along) != 1:
-            raise ValueError("`along` must be single character.")
 
         from impy.frame import MarkerFrame
 
@@ -1387,7 +1385,7 @@ class LazyImgArray(AxesMixin):
                     dims = _dims
             elif not isinstance(ref, self.__class__):
                 ref = self[ref]
-            if ref.axes != along + dims:
+            if ref.axes != [along] + dims:
                 raise ValueError(f"Arguments `along`({along}) + `dims`({dims}) do not match "
                                  f"axes of `ref`({ref.axes})")
 

{impy_array-2.5.0 → impy_array-2.5.1}/impy/lazy/core.py

@@ -278,7 +278,7 @@ def imread(
             if k in "zyx":
                 self.axes[k].unit = spatial_scale_unit.get(k)
 
-    return self.sort_axes()
+    return self
 
 
 def _imread_glob(path: str, squeeze: bool = False, **kwargs) -> LazyImgArray: