immucellai2 2.1.32__tar.gz → 2.1.33__tar.gz

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Files changed (21) hide show
  1. {immucellai2-2.1.32 → immucellai2-2.1.33}/PKG-INFO +1 -1
  2. {immucellai2-2.1.32 → immucellai2-2.1.33}/immucellai2/Deconvolution.py +10 -9
  3. {immucellai2-2.1.32 → immucellai2-2.1.33}/immucellai2.egg-info/PKG-INFO +1 -1
  4. {immucellai2-2.1.32 → immucellai2-2.1.33}/setup.cfg +1 -1
  5. {immucellai2-2.1.32 → immucellai2-2.1.33}/README.md +0 -0
  6. {immucellai2-2.1.32 → immucellai2-2.1.33}/immucellai2/Drawplot.py +0 -0
  7. {immucellai2-2.1.32 → immucellai2-2.1.33}/immucellai2/ObtainCategory.py +0 -0
  8. {immucellai2-2.1.32 → immucellai2-2.1.33}/immucellai2/PrepareData.py +0 -0
  9. {immucellai2-2.1.32 → immucellai2-2.1.33}/immucellai2/Time.py +0 -0
  10. {immucellai2-2.1.32 → immucellai2-2.1.33}/immucellai2/__init__.py +0 -0
  11. {immucellai2-2.1.32 → immucellai2-2.1.33}/immucellai2/myclasses.py +0 -0
  12. {immucellai2-2.1.32 → immucellai2-2.1.33}/immucellai2/myconfig/Celltype.category +0 -0
  13. {immucellai2-2.1.32 → immucellai2-2.1.33}/immucellai2/myconfig/MarkerUsedDeconvolution.txt +0 -0
  14. {immucellai2-2.1.32 → immucellai2-2.1.33}/immucellai2/myconfig/reference_normalCelltypes.txt +0 -0
  15. {immucellai2-2.1.32 → immucellai2-2.1.33}/immucellai2/myconfig/reference_tumorCelltypes.txt +0 -0
  16. {immucellai2-2.1.32 → immucellai2-2.1.33}/immucellai2.egg-info/SOURCES.txt +0 -0
  17. {immucellai2-2.1.32 → immucellai2-2.1.33}/immucellai2.egg-info/dependency_links.txt +0 -0
  18. {immucellai2-2.1.32 → immucellai2-2.1.33}/immucellai2.egg-info/entry_points.txt +0 -0
  19. {immucellai2-2.1.32 → immucellai2-2.1.33}/immucellai2.egg-info/requires.txt +0 -0
  20. {immucellai2-2.1.32 → immucellai2-2.1.33}/immucellai2.egg-info/top_level.txt +0 -0
  21. {immucellai2-2.1.32 → immucellai2-2.1.33}/pyproject.toml +0 -0
{immucellai2-2.1.32 → immucellai2-2.1.33}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: immucellai2
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- Version: 2.1.32
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+ Version: 2.1.33
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  Summary: A tool for immune cell type deconvolution
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  Home-page: https://github.com/VyvyanYjm/ImmuCellAI2.0
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  Author: YangJingmin
{immucellai2-2.1.32 → immucellai2-2.1.33}/immucellai2/Deconvolution.py RENAMED
@@ -256,17 +256,18 @@ def MainRun(RunObject, seed=42, MultithreadModule = 'joblib'):
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  EnvironmentRun = RunObject.EnvironmentRun
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  RecordTime = CLASS_FOR_TIME()
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  nsamples = len(RunObject.SampleList)
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+ SampleNameToIndex = {name: idx for idx, name in enumerate(RunObject.SampleList)}
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  parameterlist = []
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- #CelltypesReferenceMatrix = RunObject.CelltypesReferenceMatrix
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- for sample_index in range(nsamples):
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- SampleName = RunObject.SampleList[sample_index]
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+ for SampleNameii in range(nsamples):
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+ SampleName = RunObject.SampleList[SampleNameii]
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+ SampleIndex = SampleNameToIndex[SampleName]
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  parameterlist.append((
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- (RunObject.EmceeParameter).mycopy(),
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- RunObject.CelltypesReferenceMatrix ,
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- RunObject.SamplesBulkRNAseqExpression[sample_index],
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- RunObject.SampleList[sample_index],
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- RunObject.MAPorMLE
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- ))
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+ RunObject.EmceeParameter.mycopy(),
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+ RunObject.CelltypesReferenceMatrix,
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+ RunObject.SamplesBulkRNAseqExpression[SampleIndex],
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+ SampleName,
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+ RunObject.MAPorMLE
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+ ))
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  MultiprocessingReturnValue = []
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  if MultithreadModule == 'joblib':
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  try:
{immucellai2-2.1.32 → immucellai2-2.1.33}/immucellai2.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: immucellai2
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- Version: 2.1.32
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+ Version: 2.1.33
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  Summary: A tool for immune cell type deconvolution
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  Home-page: https://github.com/VyvyanYjm/ImmuCellAI2.0
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  Author: YangJingmin
{immucellai2-2.1.32 → immucellai2-2.1.33}/setup.cfg RENAMED
@@ -1,6 +1,6 @@
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  [metadata]
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  name = immucellai2
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- version = 2.1.32
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+ version = 2.1.33
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  author = YangJingmin
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  author_email = yangjingmin2021@163.com
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  description = A tool for immune cell type deconvolution
{immucellai2-2.1.32 → immucellai2-2.1.33}/README.md RENAMED
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