immucellai2 2.1.19__tar.gz → 2.1.20__tar.gz

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Files changed (21) hide show
  1. {immucellai2-2.1.19 → immucellai2-2.1.20}/PKG-INFO +1 -1
  2. {immucellai2-2.1.19 → immucellai2-2.1.20}/immucellai2/myfunction2.py +4 -9
  3. {immucellai2-2.1.19 → immucellai2-2.1.20}/immucellai2.egg-info/PKG-INFO +1 -1
  4. {immucellai2-2.1.19 → immucellai2-2.1.20}/setup.cfg +1 -1
  5. {immucellai2-2.1.19 → immucellai2-2.1.20}/README.md +0 -0
  6. {immucellai2-2.1.19 → immucellai2-2.1.20}/immucellai2/__init__.py +0 -0
  7. {immucellai2-2.1.19 → immucellai2-2.1.20}/immucellai2/myclasses.py +0 -0
  8. {immucellai2-2.1.19 → immucellai2-2.1.20}/immucellai2/myconfig/Celltype.category +0 -0
  9. {immucellai2-2.1.19 → immucellai2-2.1.20}/immucellai2/myconfig/MarkerUsedDeconvolution.txt +0 -0
  10. {immucellai2-2.1.19 → immucellai2-2.1.20}/immucellai2/myconfig/reference_normalCelltypes.txt +0 -0
  11. {immucellai2-2.1.19 → immucellai2-2.1.20}/immucellai2/myconfig/reference_tumorCelltypes.txt +0 -0
  12. {immucellai2-2.1.19 → immucellai2-2.1.20}/immucellai2/myfunction1.py +0 -0
  13. {immucellai2-2.1.19 → immucellai2-2.1.20}/immucellai2/myfunction3.py +0 -0
  14. {immucellai2-2.1.19 → immucellai2-2.1.20}/immucellai2/myfunction4.py +0 -0
  15. {immucellai2-2.1.19 → immucellai2-2.1.20}/immucellai2/myfunction5.py +0 -0
  16. {immucellai2-2.1.19 → immucellai2-2.1.20}/immucellai2.egg-info/SOURCES.txt +0 -0
  17. {immucellai2-2.1.19 → immucellai2-2.1.20}/immucellai2.egg-info/dependency_links.txt +0 -0
  18. {immucellai2-2.1.19 → immucellai2-2.1.20}/immucellai2.egg-info/entry_points.txt +0 -0
  19. {immucellai2-2.1.19 → immucellai2-2.1.20}/immucellai2.egg-info/requires.txt +0 -0
  20. {immucellai2-2.1.19 → immucellai2-2.1.20}/immucellai2.egg-info/top_level.txt +0 -0
  21. {immucellai2-2.1.19 → immucellai2-2.1.20}/pyproject.toml +0 -0
{immucellai2-2.1.19 → immucellai2-2.1.20}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: immucellai2
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- Version: 2.1.19
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+ Version: 2.1.20
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  Summary: A tool for immune cell type deconvolution
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  Home-page: https://github.com/VyvyanYjm/ImmuCellAI2.0
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  Author: YangJingmin
{immucellai2-2.1.19 → immucellai2-2.1.20}/immucellai2/myfunction2.py RENAMED
@@ -25,17 +25,12 @@ def SelectGeneForDeconvolution(DFReferenceProfile, FileCoveredGenes="", Method="
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  DFReferenceProfileGenes = DFReferenceProfile.index.values
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  if Method == "UsedMarker":
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  if FileCoveredGenes == "":
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- try:
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- pkg_marker_path = os.path.join(get_package_dir("immucellai2"), "myconfig/MarkerUsedDeconvolution.txt")
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- if os.path.exists(pkg_marker_path):
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- FileCoveredGenes = pkg_marker_path
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- print(f"[INFO] Found marker file in immucellai2 package: {FileCoveredGenes}")
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+ pkg_marker_path = os.path.join(get_package_dir("immucellai2"), "myconfig/MarkerUsedDeconvolution.txt")
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+ if os.path.exists(pkg_marker_path):
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+ FileCoveredGenes = pkg_marker_path
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+ print(f"[INFO] Found marker file in immucellai2 package: {FileCoveredGenes}")
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  GeneUsedForDeconvolution0 = (pandas.read_table(FileCoveredGenes, sep= "\t")).iloc[0].to_list()
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  GeneUsedForDeconvolution = list(set(GeneUsedForDeconvolution0).intersection(set(DFReferenceProfileGenes)))
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- except Exception as e:
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- print(f"[ERROR] Failed to read marker file: {str(e)}")
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- print("Tips for users: Check if MarkerUsedDeconvolution.txt is in 'single-column, no header' format")
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- return []
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  return GeneUsedForDeconvolution
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  def CelltypeCategoryCheck(FileCellTypeCategory = "", celltypelist = [] ):
{immucellai2-2.1.19 → immucellai2-2.1.20}/immucellai2.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: immucellai2
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- Version: 2.1.19
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+ Version: 2.1.20
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  Summary: A tool for immune cell type deconvolution
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  Home-page: https://github.com/VyvyanYjm/ImmuCellAI2.0
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  Author: YangJingmin
{immucellai2-2.1.19 → immucellai2-2.1.20}/setup.cfg RENAMED
@@ -1,6 +1,6 @@
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  [metadata]
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  name = immucellai2
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- version = 2.1.19
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+ version = 2.1.20
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  author = YangJingmin
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  author_email = yangjingmin2021@163.com
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  description = A tool for immune cell type deconvolution
{immucellai2-2.1.19 → immucellai2-2.1.20}/README.md RENAMED
File without changes