imas-simdb 0.13.0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- imas_simdb-0.13.0/.gitattributes +1 -0
- imas_simdb-0.13.0/.github/workflows/build_and_test.yml +53 -0
- imas_simdb-0.13.0/.github/workflows/build_docs.yml +50 -0
- imas_simdb-0.13.0/.github/workflows/publish.yml +70 -0
- imas_simdb-0.13.0/.gitignore +33 -0
- imas_simdb-0.13.0/.gitlab-ci.yml +148 -0
- imas_simdb-0.13.0/.pylintrc +0 -0
- imas_simdb-0.13.0/.readthedocs.yml +24 -0
- imas_simdb-0.13.0/Dockerfile +9 -0
- imas_simdb-0.13.0/LICENSE.txt +165 -0
- imas_simdb-0.13.0/PKG-INFO +116 -0
- imas_simdb-0.13.0/README.md +25 -0
- imas_simdb-0.13.0/ci/build_and_test.sh +55 -0
- imas_simdb-0.13.0/ci/build_docs.sh +46 -0
- imas_simdb-0.13.0/conda/requirements-server.txt +79 -0
- imas_simdb-0.13.0/conda/requirements.txt +44 -0
- imas_simdb-0.13.0/dev_requirements.txt +34 -0
- imas_simdb-0.13.0/docker/proxy_params +4 -0
- imas_simdb-0.13.0/docker/simdb.nginx +9 -0
- imas_simdb-0.13.0/docker-compose.yml +33 -0
- imas_simdb-0.13.0/docs/.gitignore +4 -0
- imas_simdb-0.13.0/docs/Makefile +19 -0
- imas_simdb-0.13.0/docs/cli.md +789 -0
- imas_simdb-0.13.0/docs/cli.md.in +32 -0
- imas_simdb-0.13.0/docs/design.md +260 -0
- imas_simdb-0.13.0/docs/developer_guide.md +91 -0
- imas_simdb-0.13.0/docs/genapidocs.sh +5 -0
- imas_simdb-0.13.0/docs/generate_cli_docs.py +65 -0
- imas_simdb-0.13.0/docs/install_guide.md +65 -0
- imas_simdb-0.13.0/docs/iter_certificate.md +24 -0
- imas_simdb-0.13.0/docs/iter_remotes.md +52 -0
- imas_simdb-0.13.0/docs/maintenance_guide.md +420 -0
- imas_simdb-0.13.0/docs/make.bat +35 -0
- imas_simdb-0.13.0/docs/setting_up_postgres.md +26 -0
- imas_simdb-0.13.0/docs/simdb-architecture.svg +1 -0
- imas_simdb-0.13.0/docs/sphinx/conf.py +196 -0
- imas_simdb-0.13.0/docs/sphinx/index.rst +24 -0
- imas_simdb-0.13.0/docs/tutorial.md +148 -0
- imas_simdb-0.13.0/docs/user_guide.md +293 -0
- imas_simdb-0.13.0/pyproject.toml +167 -0
- imas_simdb-0.13.0/requirements.txt +31 -0
- imas_simdb-0.13.0/scripts/iter_yaml_to_simdb.py +124 -0
- imas_simdb-0.13.0/scripts/python-argcomplete.sh +76 -0
- imas_simdb-0.13.0/scripts/simdb +13 -0
- imas_simdb-0.13.0/scripts/simdb_legacy_importer.py +1352 -0
- imas_simdb-0.13.0/scripts/simdb_server +5 -0
- imas_simdb-0.13.0/setup.cfg +4 -0
- imas_simdb-0.13.0/simdb.sh +18 -0
- imas_simdb-0.13.0/sql/create.sql +38 -0
- imas_simdb-0.13.0/sql/drop.sql +6 -0
- imas_simdb-0.13.0/sql/manage.py +34 -0
- imas_simdb-0.13.0/sql/test2.py +267 -0
- imas_simdb-0.13.0/src/imas_simdb.egg-info/PKG-INFO +116 -0
- imas_simdb-0.13.0/src/imas_simdb.egg-info/SOURCES.txt +166 -0
- imas_simdb-0.13.0/src/imas_simdb.egg-info/dependency_links.txt +1 -0
- imas_simdb-0.13.0/src/imas_simdb.egg-info/entry_points.txt +3 -0
- imas_simdb-0.13.0/src/imas_simdb.egg-info/requires.txt +72 -0
- imas_simdb-0.13.0/src/imas_simdb.egg-info/top_level.txt +1 -0
- imas_simdb-0.13.0/src/simdb/__init__.py +20 -0
- imas_simdb-0.13.0/src/simdb/_version.py +34 -0
- imas_simdb-0.13.0/src/simdb/checksum.py +27 -0
- imas_simdb-0.13.0/src/simdb/cli/__init__.py +6 -0
- imas_simdb-0.13.0/src/simdb/cli/__main__.py +3 -0
- imas_simdb-0.13.0/src/simdb/cli/commands/__init__.py +14 -0
- imas_simdb-0.13.0/src/simdb/cli/commands/alias.py +126 -0
- imas_simdb-0.13.0/src/simdb/cli/commands/config.py +57 -0
- imas_simdb-0.13.0/src/simdb/cli/commands/database.py +19 -0
- imas_simdb-0.13.0/src/simdb/cli/commands/manifest.py +34 -0
- imas_simdb-0.13.0/src/simdb/cli/commands/provenance.py +62 -0
- imas_simdb-0.13.0/src/simdb/cli/commands/remote.py +659 -0
- imas_simdb-0.13.0/src/simdb/cli/commands/simulation.py +427 -0
- imas_simdb-0.13.0/src/simdb/cli/commands/utils.py +168 -0
- imas_simdb-0.13.0/src/simdb/cli/commands/validators.py +13 -0
- imas_simdb-0.13.0/src/simdb/cli/file_system.py +2 -0
- imas_simdb-0.13.0/src/simdb/cli/manifest.py +612 -0
- imas_simdb-0.13.0/src/simdb/cli/remote_api.py +993 -0
- imas_simdb-0.13.0/src/simdb/cli/simdb.py +98 -0
- imas_simdb-0.13.0/src/simdb/cli/template.yaml +14 -0
- imas_simdb-0.13.0/src/simdb/config/__init__.py +10 -0
- imas_simdb-0.13.0/src/simdb/config/config.py +354 -0
- imas_simdb-0.13.0/src/simdb/database/__init__.py +10 -0
- imas_simdb-0.13.0/src/simdb/database/database.py +734 -0
- imas_simdb-0.13.0/src/simdb/database/models/__init__.py +7 -0
- imas_simdb-0.13.0/src/simdb/database/models/base.py +40 -0
- imas_simdb-0.13.0/src/simdb/database/models/file.py +139 -0
- imas_simdb-0.13.0/src/simdb/database/models/metadata.py +42 -0
- imas_simdb-0.13.0/src/simdb/database/models/simulation.py +353 -0
- imas_simdb-0.13.0/src/simdb/database/models/types.py +110 -0
- imas_simdb-0.13.0/src/simdb/database/models/utils.py +68 -0
- imas_simdb-0.13.0/src/simdb/database/models/watcher.py +59 -0
- imas_simdb-0.13.0/src/simdb/docstrings.py +19 -0
- imas_simdb-0.13.0/src/simdb/email/__init__.py +0 -0
- imas_simdb-0.13.0/src/simdb/email/server.py +35 -0
- imas_simdb-0.13.0/src/simdb/imas/__init__.py +6 -0
- imas_simdb-0.13.0/src/simdb/imas/checksum.py +95 -0
- imas_simdb-0.13.0/src/simdb/imas/imas_metadata.yaml +20 -0
- imas_simdb-0.13.0/src/simdb/imas/metadata.py +142 -0
- imas_simdb-0.13.0/src/simdb/imas/utils.py +348 -0
- imas_simdb-0.13.0/src/simdb/json.py +51 -0
- imas_simdb-0.13.0/src/simdb/notifications.py +8 -0
- imas_simdb-0.13.0/src/simdb/py.typed +0 -0
- imas_simdb-0.13.0/src/simdb/query.py +173 -0
- imas_simdb-0.13.0/src/simdb/remote/__init__.py +19 -0
- imas_simdb-0.13.0/src/simdb/remote/apis/__init__.py +147 -0
- imas_simdb-0.13.0/src/simdb/remote/apis/files.py +248 -0
- imas_simdb-0.13.0/src/simdb/remote/apis/metadata.py +29 -0
- imas_simdb-0.13.0/src/simdb/remote/apis/v1/__init__.py +55 -0
- imas_simdb-0.13.0/src/simdb/remote/apis/v1/simulations.py +349 -0
- imas_simdb-0.13.0/src/simdb/remote/apis/v1_1/__init__.py +55 -0
- imas_simdb-0.13.0/src/simdb/remote/apis/v1_1/simulations.py +460 -0
- imas_simdb-0.13.0/src/simdb/remote/apis/v1_2/__init__.py +59 -0
- imas_simdb-0.13.0/src/simdb/remote/apis/v1_2/sim.sql +39 -0
- imas_simdb-0.13.0/src/simdb/remote/apis/v1_2/simulations.py +632 -0
- imas_simdb-0.13.0/src/simdb/remote/apis/watchers.py +68 -0
- imas_simdb-0.13.0/src/simdb/remote/app.py +62 -0
- imas_simdb-0.13.0/src/simdb/remote/core/__init__.py +0 -0
- imas_simdb-0.13.0/src/simdb/remote/core/alias.py +20 -0
- imas_simdb-0.13.0/src/simdb/remote/core/auth/__init__.py +124 -0
- imas_simdb-0.13.0/src/simdb/remote/core/auth/_authenticator.py +52 -0
- imas_simdb-0.13.0/src/simdb/remote/core/auth/_exceptions.py +2 -0
- imas_simdb-0.13.0/src/simdb/remote/core/auth/_user.py +4 -0
- imas_simdb-0.13.0/src/simdb/remote/core/auth/active_directory.py +47 -0
- imas_simdb-0.13.0/src/simdb/remote/core/auth/firewall.py +34 -0
- imas_simdb-0.13.0/src/simdb/remote/core/auth/keycloak.py +34 -0
- imas_simdb-0.13.0/src/simdb/remote/core/auth/ldap.py +89 -0
- imas_simdb-0.13.0/src/simdb/remote/core/auth/no_authentication.py +25 -0
- imas_simdb-0.13.0/src/simdb/remote/core/auth/token.py +44 -0
- imas_simdb-0.13.0/src/simdb/remote/core/cache.py +27 -0
- imas_simdb-0.13.0/src/simdb/remote/core/errors.py +7 -0
- imas_simdb-0.13.0/src/simdb/remote/core/path.py +22 -0
- imas_simdb-0.13.0/src/simdb/remote/core/typing.py +18 -0
- imas_simdb-0.13.0/src/simdb/remote/scripts/app.cfg +18 -0
- imas_simdb-0.13.0/src/simdb/remote/scripts/openssl.cnf +22 -0
- imas_simdb-0.13.0/src/simdb/remote/scripts/run.sh +12 -0
- imas_simdb-0.13.0/src/simdb/remote/scripts/setup.env +6 -0
- imas_simdb-0.13.0/src/simdb/remote/scripts/setup.md +38 -0
- imas_simdb-0.13.0/src/simdb/remote/scripts/simdb.initd +62 -0
- imas_simdb-0.13.0/src/simdb/remote/scripts/simdb.nginx +9 -0
- imas_simdb-0.13.0/src/simdb/remote/wsgi.py +35 -0
- imas_simdb-0.13.0/src/simdb/uda/__init__.py +6 -0
- imas_simdb-0.13.0/src/simdb/uda/checksum.py +30 -0
- imas_simdb-0.13.0/src/simdb/uri.py +161 -0
- imas_simdb-0.13.0/src/simdb/validation/__init__.py +3 -0
- imas_simdb-0.13.0/src/simdb/validation/file/__init__.py +17 -0
- imas_simdb-0.13.0/src/simdb/validation/file/ids_validator.py +99 -0
- imas_simdb-0.13.0/src/simdb/validation/file/validator_base.py +28 -0
- imas_simdb-0.13.0/src/simdb/validation/validator.py +206 -0
- imas_simdb-0.13.0/test.yaml +3 -0
- imas_simdb-0.13.0/tests/cli/test_cli_alias_command.py +78 -0
- imas_simdb-0.13.0/tests/cli/test_cli_config_command.py +34 -0
- imas_simdb-0.13.0/tests/cli/test_cli_database_command.py +13 -0
- imas_simdb-0.13.0/tests/cli/test_cli_manifest_command.py +38 -0
- imas_simdb-0.13.0/tests/cli/test_cli_provenance_command.py +20 -0
- imas_simdb-0.13.0/tests/cli/test_cli_remote_command.py +334 -0
- imas_simdb-0.13.0/tests/cli/test_cli_simulation_command.py +85 -0
- imas_simdb-0.13.0/tests/cli/utils.py +51 -0
- imas_simdb-0.13.0/tests/config/test_config.py +48 -0
- imas_simdb-0.13.0/tests/database/test_database.py +52 -0
- imas_simdb-0.13.0/tests/database/test_models.py +40 -0
- imas_simdb-0.13.0/tests/locust.yaml +50 -0
- imas_simdb-0.13.0/tests/manifest.yaml +44 -0
- imas_simdb-0.13.0/tests/remote/test_api.py +76 -0
- imas_simdb-0.13.0/tests/remote/test_authentication.py +92 -0
- imas_simdb-0.13.0/tests/test0.yaml +75 -0
- imas_simdb-0.13.0/tests/test_uri.py +62 -0
- imas_simdb-0.13.0/tests/tests.py +14 -0
- imas_simdb-0.13.0/validation/iter_scenarios_validation.yaml +309 -0
- imas_simdb-0.13.0/validation/simple_validation.yaml +22 -0
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src/simdb/_version.py export-subst
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if: startsWith(github.ref, 'refs/tags/') # only publish to PyPI on tag pushes
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|
32
|
+
needs:
|
|
33
|
+
- build
|
|
34
|
+
runs-on: ubuntu-22.04
|
|
35
|
+
environment:
|
|
36
|
+
name: pypi
|
|
37
|
+
url: https://pypi.org/p/imas-simdb
|
|
38
|
+
permissions:
|
|
39
|
+
id-token: write # IMPORTANT: mandatory for trusted publishing
|
|
40
|
+
steps:
|
|
41
|
+
- name: Download all the dists
|
|
42
|
+
uses: actions/download-artifact@v4
|
|
43
|
+
with:
|
|
44
|
+
name: python-package-distributions
|
|
45
|
+
path: dist/
|
|
46
|
+
- name: Publish distribution to PyPI
|
|
47
|
+
uses: pypa/gh-action-pypi-publish@release/v1
|
|
48
|
+
|
|
49
|
+
publish-to-testpypi:
|
|
50
|
+
name: Publish SimDB distribution to TestPyPI
|
|
51
|
+
if: github.ref=='refs/heads/develop' # only publish to TestPyPI on develop pushes
|
|
52
|
+
needs:
|
|
53
|
+
- build
|
|
54
|
+
runs-on: ubuntu-22.04
|
|
55
|
+
environment:
|
|
56
|
+
name: testpypi
|
|
57
|
+
url: https://test.pypi.org/p/imas-simdb
|
|
58
|
+
permissions:
|
|
59
|
+
id-token: write # IMPORTANT: mandatory for trusted publishing
|
|
60
|
+
steps:
|
|
61
|
+
- name: Download all the dists
|
|
62
|
+
uses: actions/download-artifact@v4
|
|
63
|
+
with:
|
|
64
|
+
name: python-package-distributions
|
|
65
|
+
path: dist/
|
|
66
|
+
- name: Publish distribution to TestPyPI
|
|
67
|
+
uses: pypa/gh-action-pypi-publish@unstable/v1
|
|
68
|
+
with:
|
|
69
|
+
repository-url: https://test.pypi.org/legacy/
|
|
70
|
+
verbose: true
|
|
@@ -0,0 +1,33 @@
|
|
|
1
|
+
__pycache__
|
|
2
|
+
sql/sim.db
|
|
3
|
+
.idea/
|
|
4
|
+
.mypy_cache
|
|
5
|
+
/build
|
|
6
|
+
/data
|
|
7
|
+
/logs
|
|
8
|
+
venv
|
|
9
|
+
environment.txt
|
|
10
|
+
environment.yml
|
|
11
|
+
git_update
|
|
12
|
+
runtests
|
|
13
|
+
sdb
|
|
14
|
+
src/simdb/cli/runtests
|
|
15
|
+
src/simdb.egg-info
|
|
16
|
+
test.yml
|
|
17
|
+
test4_manifest.yml
|
|
18
|
+
test7_manifest.yml
|
|
19
|
+
test_manifest.yml
|
|
20
|
+
/temp
|
|
21
|
+
/htmlcov
|
|
22
|
+
/test-reports/
|
|
23
|
+
/tests/cli/test.cfg
|
|
24
|
+
/tests/cli/*.yaml
|
|
25
|
+
.eggs
|
|
26
|
+
.coverage
|
|
27
|
+
*.xml
|
|
28
|
+
simdb-coverage-report
|
|
29
|
+
*.tar.gz
|
|
30
|
+
src/simdb/_version.py
|
|
31
|
+
*.egg-info
|
|
32
|
+
*.egg
|
|
33
|
+
*.whl
|
|
@@ -0,0 +1,148 @@
|
|
|
1
|
+
image:
|
|
2
|
+
name: "python:3.7"
|
|
3
|
+
|
|
4
|
+
stages:
|
|
5
|
+
- build
|
|
6
|
+
- test
|
|
7
|
+
- doc
|
|
8
|
+
|
|
9
|
+
# Change pip's cache directory to be inside the project directory since we can
|
|
10
|
+
# only cache local items.
|
|
11
|
+
variables:
|
|
12
|
+
PIP_CACHE_DIR: "$CI_PROJECT_DIR/.cache/pip"
|
|
13
|
+
PYTHONTOOLS_VENV_PATH: "$CI_PROJECT_DIR/venv/simdb"
|
|
14
|
+
PYTHONTOOLS_DIR: "$CI_PROJECT_DIR"
|
|
15
|
+
PACKAGE: "simdb"
|
|
16
|
+
|
|
17
|
+
# Pip's cache doesn't store the python packages
|
|
18
|
+
# https://pip.pypa.io/en/stable/reference/pip_install/#caching
|
|
19
|
+
#
|
|
20
|
+
# If you want to also cache the installed packages, you have to install
|
|
21
|
+
# them in a virtualenv and cache it as well.
|
|
22
|
+
.cache_python: &cache_python
|
|
23
|
+
paths:
|
|
24
|
+
- $PIP_CACHE_DIR
|
|
25
|
+
|
|
26
|
+
|
|
27
|
+
########################################
|
|
28
|
+
# General Docker environment templates #
|
|
29
|
+
########################################
|
|
30
|
+
|
|
31
|
+
##############################
|
|
32
|
+
# Global tests and templates #
|
|
33
|
+
##############################
|
|
34
|
+
before_script:
|
|
35
|
+
- export USER=root
|
|
36
|
+
|
|
37
|
+
.collect_deps_manually: &collect_deps_manually |
|
|
38
|
+
export BUILD_DEPS=$(cat pyproject.toml | grep requires | cut -d'=' -f2- | tr -d ,\"\' | sed "s/^ \[//" | sed "s/\]$//")
|
|
39
|
+
export RUN_DEP_FILES=dev_requirements.txt
|
|
40
|
+
|
|
41
|
+
.print_debugging: &print_debugging |
|
|
42
|
+
python --version # Print out python version for debugging
|
|
43
|
+
pip --version # Show pip version for debugging
|
|
44
|
+
echo $PYTHONPATH
|
|
45
|
+
echo $PATH
|
|
46
|
+
echo BUILD_DEPS=$BUILD_DEPS
|
|
47
|
+
echo RUN_DEP_FILES=$RUN_DEP_FILES
|
|
48
|
+
|
|
49
|
+
# venv editable install
|
|
50
|
+
.install_venv_editable_template:
|
|
51
|
+
script:
|
|
52
|
+
- *collect_deps_manually
|
|
53
|
+
- *print_debugging
|
|
54
|
+
# Now we install dependencies manually
|
|
55
|
+
- pip install --upgrade $BUILD_DEPS # Install build deps manually
|
|
56
|
+
- python setup.py --version # Print setuptools found version
|
|
57
|
+
- python -m pip freeze > $PYTHONTOOLS_DIR/pre_install_packages.txt
|
|
58
|
+
- for file in $RUN_DEP_FILES; do echo Installing $file; pip install -r $file; done; # Install run deps manually
|
|
59
|
+
# Install from wheel
|
|
60
|
+
# Should install almost nothing, as we installed most of it ourselves
|
|
61
|
+
# Install without extras here. We installed these manually.
|
|
62
|
+
- pip install ---no-build-isolation --upgrade --editable . # Install local folder in editable mode
|
|
63
|
+
- pip freeze > $PYTHONTOOLS_DIR/post_install_packages.txt
|
|
64
|
+
# Do basic sanity checking
|
|
65
|
+
- mkdir tmp && cd tmp
|
|
66
|
+
- python -c "import $PACKAGE; print($PACKAGE.__version__); print($PACKAGE.__path__)" # Try regular import
|
|
67
|
+
# Run the real test, pytest
|
|
68
|
+
- which pytest
|
|
69
|
+
- pytest --version
|
|
70
|
+
- echo Running "pytest --cov=$PACKAGE --cov-report=term --cov-report=xml:$PYTHONTOOLS_DIR/coverage.xml --junit-xml=$PYTHONTOOLS_DIR/junit.xml --ignore=../tests/NNDB '"$PYTHONTOOLS_DIR"'"
|
|
71
|
+
- pytest --cov=$PACKAGE --cov-report=term --cov-report=xml:$PYTHONTOOLS_DIR/coverage.xml --junit-xml=$PYTHONTOOLS_DIR/junit.xml "$PYTHONTOOLS_DIR"
|
|
72
|
+
# One pipeline has one artifact. We need both the test report _and_ the installed packages to pass on
|
|
73
|
+
artifacts:
|
|
74
|
+
name: "$CI_JOB_NAME-$CI_COMMIT_REF_NAME"
|
|
75
|
+
reports:
|
|
76
|
+
junit: [$PYTHONTOOLS_DIR/junit.xml]
|
|
77
|
+
cobertura: [$PYTHONTOOLS_DIR/coverage.xml]
|
|
78
|
+
when: always
|
|
79
|
+
expire_in: 1 day # These are only used in quick interactive CI debugging, and in next jobs
|
|
80
|
+
stage: test
|
|
81
|
+
cache:
|
|
82
|
+
<<: *cache_python
|
|
83
|
+
policy: push
|
|
84
|
+
needs: [] # Only needs a sane python env
|
|
85
|
+
|
|
86
|
+
# editable venv-like install
|
|
87
|
+
install_venv_editable:
|
|
88
|
+
extends: .install_venv_editable_template
|
|
89
|
+
|
|
90
|
+
flake8:
|
|
91
|
+
stage: test
|
|
92
|
+
before_script:
|
|
93
|
+
- pip install flake8 pyflakes anybadge
|
|
94
|
+
script:
|
|
95
|
+
- mkdir -p ./flake8
|
|
96
|
+
- flake8 --exit-zero --doctests --statistics --count $(find $PACKAGE -name '*.py') | tee flake8.txt
|
|
97
|
+
- PEP8_VIOLATIONS=$(tail flake8.txt -n1)
|
|
98
|
+
- echo "Flake8 finds $PEP8_VIOLATIONS PEP8 violations"
|
|
99
|
+
- anybadge -ou --label=flake8 --value=$PEP8_VIOLATIONS --file=flake8/flake8.svg -c silver
|
|
100
|
+
artifacts:
|
|
101
|
+
paths:
|
|
102
|
+
- ./flake8/
|
|
103
|
+
|
|
104
|
+
pylint:
|
|
105
|
+
stage: test
|
|
106
|
+
before_script:
|
|
107
|
+
- pip install pylint pylint-exit anybadge
|
|
108
|
+
script:
|
|
109
|
+
- mkdir -p ./pylint
|
|
110
|
+
- pylint --rcfile=.pylintrc --output-format=text src | tee ./pylint/pylint.log || pylint-exit $?
|
|
111
|
+
- PYLINT_SCORE=$(sed -n 's/^Your code has been rated at \([-0-9.]*\)\/.*/\1/p' ./pylint/pylint.log)
|
|
112
|
+
- echo "Pylint score is $PYLINT_SCORE"
|
|
113
|
+
- anybadge -ou --label=pylint --value=$PYLINT_SCORE --file=pylint/pylint.svg 2=red 4=orange 8=yellow 10=green
|
|
114
|
+
artifacts:
|
|
115
|
+
paths:
|
|
116
|
+
- ./pylint/
|
|
117
|
+
|
|
118
|
+
black:
|
|
119
|
+
stage: test
|
|
120
|
+
script:
|
|
121
|
+
- pip install black
|
|
122
|
+
- black --diff --color src
|
|
123
|
+
|
|
124
|
+
pages:
|
|
125
|
+
stage: doc
|
|
126
|
+
script:
|
|
127
|
+
- pip install -r dev_requirements.txt
|
|
128
|
+
- pip install --upgrade --editable .
|
|
129
|
+
- cd docs
|
|
130
|
+
- sphinx-apidoc -f -o sphinx -e -M ../src/simdb && rm sphinx/modules.rst
|
|
131
|
+
- cp *.md sphinx
|
|
132
|
+
- cp *.svg sphinx
|
|
133
|
+
- make clean
|
|
134
|
+
- make html
|
|
135
|
+
- mv _build/html/ ../public/
|
|
136
|
+
artifacts:
|
|
137
|
+
paths:
|
|
138
|
+
- public/
|
|
139
|
+
- docs/_build/
|
|
140
|
+
- docs/source/generated/
|
|
141
|
+
only:
|
|
142
|
+
- master
|
|
143
|
+
- /^release.*$/
|
|
144
|
+
- feature/ukaea-gitlab-ci
|
|
145
|
+
cache:
|
|
146
|
+
<<: *cache_python
|
|
147
|
+
policy: pull
|
|
148
|
+
needs: ["install_venv_editable"]
|
|
File without changes
|
|
@@ -0,0 +1,24 @@
|
|
|
1
|
+
version: 2
|
|
2
|
+
|
|
3
|
+
build:
|
|
4
|
+
os: "ubuntu-22.04"
|
|
5
|
+
tools:
|
|
6
|
+
python: "3.11"
|
|
7
|
+
jobs:
|
|
8
|
+
post_checkout:
|
|
9
|
+
- git fetch --unshallow || true
|
|
10
|
+
- cp docs/*.md docs/sphinx/ || true
|
|
11
|
+
pre_build:
|
|
12
|
+
- cd docs && sphinx-apidoc -f -o sphinx -e -M ../src/simdb
|
|
13
|
+
|
|
14
|
+
python:
|
|
15
|
+
install:
|
|
16
|
+
- method: pip
|
|
17
|
+
path: .
|
|
18
|
+
extra_requirements:
|
|
19
|
+
- build-docs
|
|
20
|
+
|
|
21
|
+
sphinx:
|
|
22
|
+
builder: html
|
|
23
|
+
configuration: docs/sphinx/conf.py
|
|
24
|
+
fail_on_warning: false
|
|
@@ -0,0 +1,9 @@
|
|
|
1
|
+
FROM python:3.7
|
|
2
|
+
COPY ./ /tmp/simdb/
|
|
3
|
+
RUN cd /tmp/simdb/ && \
|
|
4
|
+
pip3 install . && \
|
|
5
|
+
pip3 install flask flask_caching flask_cors flask_restx gunicorn psycopg2-binary && \
|
|
6
|
+
rm -rf /tmp/simdb
|
|
7
|
+
|
|
8
|
+
ENTRYPOINT ["gunicorn", "--bind=0.0.0.0:5000", "--workers=1", "simdb.remote.wsgi:app"]
|
|
9
|
+
EXPOSE 5000
|
|
@@ -0,0 +1,165 @@
|
|
|
1
|
+
GNU LESSER GENERAL PUBLIC LICENSE
|
|
2
|
+
Version 3, 29 June 2007
|
|
3
|
+
|
|
4
|
+
Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/>
|
|
5
|
+
Everyone is permitted to copy and distribute verbatim copies
|
|
6
|
+
of this license document, but changing it is not allowed.
|
|
7
|
+
|
|
8
|
+
|
|
9
|
+
This version of the GNU Lesser General Public License incorporates
|
|
10
|
+
the terms and conditions of version 3 of the GNU General Public
|
|
11
|
+
License, supplemented by the additional permissions listed below.
|
|
12
|
+
|
|
13
|
+
0. Additional Definitions.
|
|
14
|
+
|
|
15
|
+
As used herein, "this License" refers to version 3 of the GNU Lesser
|
|
16
|
+
General Public License, and the "GNU GPL" refers to version 3 of the GNU
|
|
17
|
+
General Public License.
|
|
18
|
+
|
|
19
|
+
"The Library" refers to a covered work governed by this License,
|
|
20
|
+
other than an Application or a Combined Work as defined below.
|
|
21
|
+
|
|
22
|
+
An "Application" is any work that makes use of an interface provided
|
|
23
|
+
by the Library, but which is not otherwise based on the Library.
|
|
24
|
+
Defining a subclass of a class defined by the Library is deemed a mode
|
|
25
|
+
of using an interface provided by the Library.
|
|
26
|
+
|
|
27
|
+
A "Combined Work" is a work produced by combining or linking an
|
|
28
|
+
Application with the Library. The particular version of the Library
|
|
29
|
+
with which the Combined Work was made is also called the "Linked
|
|
30
|
+
Version".
|
|
31
|
+
|
|
32
|
+
The "Minimal Corresponding Source" for a Combined Work means the
|
|
33
|
+
Corresponding Source for the Combined Work, excluding any source code
|
|
34
|
+
for portions of the Combined Work that, considered in isolation, are
|
|
35
|
+
based on the Application, and not on the Linked Version.
|
|
36
|
+
|
|
37
|
+
The "Corresponding Application Code" for a Combined Work means the
|
|
38
|
+
object code and/or source code for the Application, including any data
|
|
39
|
+
and utility programs needed for reproducing the Combined Work from the
|
|
40
|
+
Application, but excluding the System Libraries of the Combined Work.
|
|
41
|
+
|
|
42
|
+
1. Exception to Section 3 of the GNU GPL.
|
|
43
|
+
|
|
44
|
+
You may convey a covered work under sections 3 and 4 of this License
|
|
45
|
+
without being bound by section 3 of the GNU GPL.
|
|
46
|
+
|
|
47
|
+
2. Conveying Modified Versions.
|
|
48
|
+
|
|
49
|
+
If you modify a copy of the Library, and, in your modifications, a
|
|
50
|
+
facility refers to a function or data to be supplied by an Application
|
|
51
|
+
that uses the facility (other than as an argument passed when the
|
|
52
|
+
facility is invoked), then you may convey a copy of the modified
|
|
53
|
+
version:
|
|
54
|
+
|
|
55
|
+
a) under this License, provided that you make a good faith effort to
|
|
56
|
+
ensure that, in the event an Application does not supply the
|
|
57
|
+
function or data, the facility still operates, and performs
|
|
58
|
+
whatever part of its purpose remains meaningful, or
|
|
59
|
+
|
|
60
|
+
b) under the GNU GPL, with none of the additional permissions of
|
|
61
|
+
this License applicable to that copy.
|
|
62
|
+
|
|
63
|
+
3. Object Code Incorporating Material from Library Header Files.
|
|
64
|
+
|
|
65
|
+
The object code form of an Application may incorporate material from
|
|
66
|
+
a header file that is part of the Library. You may convey such object
|
|
67
|
+
code under terms of your choice, provided that, if the incorporated
|
|
68
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for conveying Corresponding Source.)
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Metadata-Version: 2.4
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Name: imas-simdb
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Version: 0.13.0
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Summary: ITER Simulation Management Tool
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Author: ITER Organization
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Author-email: imas-support@iter.org
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Maintainer: ITER Organization
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Project-URL: Documentation, https://sharepoint.iter.org/departments/POP/CM/IMDesign/Code%20Documentation/simdb-doc/html/index.html
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Project-URL: Repository, https://git.iter.org/projects/IMEX/repos/simdb/browse
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Classifier: Programming Language :: Python :: 3
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Classifier: Programming Language :: Python :: 3 :: Only
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Classifier: Programming Language :: Python :: 3.8
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Classifier: Development Status :: 4 - Beta
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# SimDB simulation management tool
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SimDB is a tool designed to track, manage, upload and query simulations. The simulation data can be tagged with metadata, managed locally or transferred to remote SimDB services. Uploaded simulations can then be queried based on metadata.
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## Command line interface
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SimDB consists of a command line interface (CLI) tool which interacts with one or more remote services.
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### Accessing ITER remotes
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### Installing ITER certificate
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To access the ITER remote from within the ITER systems you will need to install the ITER SSL certificate. Details for how to do this can be found [here](docs/iter_certificate.md).
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## Server setup
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For information on setting and maintaining a remote CLI server see [here](docs/maintenance_guide.md).
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## Developer guide
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Information about setting up a developer environment can be found [here](docs/developer_guide.md).
|