imas-python 1.1.2.dev54__tar.gz → 1.1.2.dev55__tar.gz

{imas_python-1.1.2.dev54/imas_python.egg-info → imas_python-1.1.2.dev55}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: imas-python
-Version: 1.1.2.dev54
+Version: 1.1.2.dev55
 Summary: Pythonic wrappers for the IMAS Access Layer
 Author: ITER Organization
 Author-email: Karel Lucas van de Plassche <karelvandeplassche@gmail.com>, Daan van Vugt <dvanvugt@ignitioncomputing.com>, Maarten Sebregts <msebregts@ignitioncomputing.com>, imas-support@iter.org

{imas_python-1.1.2.dev54 → imas_python-1.1.2.dev55}/ci/build_dd_zip.sh

@@ -3,18 +3,23 @@
 # Note: this script should be run from the root of the git repository
 
 # Debuggging:
-set -e -o pipefail
+if [[ "$(uname -n)" == *"bamboo"* ]]; then
+    set -e -o pipefail
+fi
 echo "Loading modules..."
 
 # Set up environment such that module files can be loaded
 source /etc/profile.d/modules.sh
 module purge
 # Modules are supplied as arguments in the CI job:
-module load $@
+if [ -z "$@" ]; then
+    module load Python
+else
+    module load $@
+fi
 
 # Debuggging:
 echo "Done loading modules"
-set -x
 
 # Build the DD zip
 rm -rf venv  # Environment should be clean, but remove directory to be sure

{imas_python-1.1.2.dev54 → imas_python-1.1.2.dev55}/ci/build_docs_and_dist.sh

@@ -3,7 +3,9 @@
 # Note: this script should be run from the root of the git repository
 
 # Debuggging:
-set -e -o pipefail
+if [[ "$(uname -n)" == *"bamboo"* ]]; then
+    set -e -o pipefail
+fi
 echo "Loading modules:" $@
 
 # Set up environment such that module files can be loaded
@@ -14,8 +16,6 @@ module load $@
 
 # Debuggging:
 echo "Done loading modules"
-set -x
-
 
 # Set up the testing venv
 rm -rf venv  # Environment should be clean, but remove directory to be sure
@@ -41,3 +41,5 @@ export SPHINXOPTS='-W -n --keep-going'
 
 # Run sphinx to create the documentation
 make -C docs clean html
+
+deactivate

{imas_python-1.1.2.dev54 → imas_python-1.1.2.dev55}/ci/linting.sh

@@ -3,18 +3,23 @@
 # Note: this script should be run from the root of the git repository
 
 # Debuggging:
-set -e -o pipefail
+if [[ "$(uname -n)" == *"bamboo"* ]]; then
+    set -e -o pipefail
+fi
 echo "Loading modules..."
 
 # Set up environment such that module files can be loaded
 source /etc/profile.d/modules.sh
 module purge
 # Modules are supplied as arguments in the CI job:
-module load $@
+if [ -z "$@" ]; then
+    module load Python
+else
+    module load $@
+fi
 
 # Debuggging:
 echo "Done loading modules"
-set -x
 
 # Create a venv
 rm -rf venv
@@ -26,3 +31,5 @@ pip install --upgrade 'black >=24,<25' flake8
 
 black --check imas
 flake8 imas
+
+deactivate

{imas_python-1.1.2.dev54 → imas_python-1.1.2.dev55}/ci/run_benchmark.sh

@@ -17,12 +17,16 @@ source /etc/profile.d/modules.sh
 module purge
 # Modules are supplied as arguments in the CI job:
 # IMAS-AL-Python/5.2.1-intel-2023b-DD-3.41.0 Saxon-HE/12.4-Java-21
-module load IMAS-AL-Core/5.4.3-intel-2023b Saxon-HE/12.4-Java-21
+if [ -z "$@" ]; then
+    module load IMAS-AL-Core
+else
+    module load $@
+fi
+
 
 
 # Debuggging:
 echo "Done loading modules"
-set -x
 
 # Export current PYTHONPATH so ASV benchmarks can import imas
 export ASV_PYTHONPATH="$PYTHONPATH"
@@ -71,3 +75,5 @@ asv publish
 # And persistently store them
 cp -rf .asv/{results,html} "$BENCHMARKS_DIR"
 
+deactivate
+

{imas_python-1.1.2.dev54 → imas_python-1.1.2.dev55}/ci/run_pytest.sh

@@ -3,19 +3,23 @@
 # Note: this script should be run from the root of the git repository
 
 # Debuggging:
-set -e -o pipefail
+if [[ "$(uname -n)" == *"bamboo"* ]]; then
+    set -e -o pipefail
+fi
 echo "Loading modules:" $@
 
 # Set up environment such that module files can be loaded
 source /etc/profile.d/modules.sh
 module purge
 # Modules are supplied as arguments in the CI job:
-module load $@
+if [ -z "$@" ]; then
+    module load IMAS-AL-Core
+else
+    module load $@
+fi
 
 # Debuggging:
 echo "Done loading modules"
-set -x
-
 
 # Set up the testing venv
 rm -rf venv  # Environment should be clean, but remove directory to be sure
@@ -33,5 +37,8 @@ pip freeze
 # Clean artifacts created by pytest
 rm -f junit.xml
 rm -rf htmlcov
+mkdir -p ~/tmp
+export PYTEST_DEBUG_TEMPROOT=~/tmp
+python -m pytest -n=auto --cov=imas --cov-report=term-missing --cov-report=html --junit-xml=junit.xml -x
 
-python -m pytest -n=auto --cov=imas --cov-report=term-missing --cov-report=html --junit-xml=junit.xml
+deactivate

{imas_python-1.1.2.dev54 → imas_python-1.1.2.dev55}/imas/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '1.1.2.dev54'
-__version_tuple__ = version_tuple = (1, 1, 2, 'dev54')
+__version__ = version = '1.1.2.dev55'
+__version_tuple__ = version_tuple = (1, 1, 2, 'dev55')

{imas_python-1.1.2.dev54 → imas_python-1.1.2.dev55}/imas/backends/netcdf/ids2nc.py

@@ -10,6 +10,7 @@ import numpy
 from packaging import version
 
 from imas.backends.netcdf.nc_metadata import NCMetadata
+from imas.exception import InvalidNetCDFEntry
 from imas.ids_base import IDSBase
 from imas.ids_data_type import IDSDataType
 from imas.ids_defs import IDS_TIME_MODE_HOMOGENEOUS

{imas_python-1.1.2.dev54 → imas_python-1.1.2.dev55}/imas/test/test_nc_autofill.py

@@ -22,9 +22,7 @@ def test_nc_latest_dd_autofill_put_get_skip_complex(ids_name, tmp_path):
     version.parse(netCDF4.__version__) >= version.parse("1.7.0"),
     reason="NetCDF4 versions < 1.7.0 do not support complex numbers",
 )
-def test_nc_latest_dd_autofill_put_get_with_complex_older_netCDF4(
-    ids_name, tmp_path
-):
+def test_nc_latest_dd_autofill_put_get_with_complex_older_netCDF4(ids_name, tmp_path):
     with DBEntry(f"{tmp_path}/test-{ids_name}.nc", "x") as entry:
         ids = entry.factory.new(ids_name)
         fill_consistent(ids, leave_empty=0.5, skip_complex=False)
@@ -45,9 +43,7 @@ def test_nc_latest_dd_autofill_put_get_with_complex_older_netCDF4(
     version.parse(netCDF4.__version__) < version.parse("1.7.0"),
     reason="NetCDF4 versions >= 1.7.0 support complex numbers",
 )
-def test_nc_latest_dd_autofill_put_get_with_complex_newer_netCDF4(
-    ids_name, tmp_path
-):
+def test_nc_latest_dd_autofill_put_get_with_complex_newer_netCDF4(ids_name, tmp_path):
     with DBEntry(f"{tmp_path}/test-{ids_name}.nc", "x") as entry:
         ids = entry.factory.new(ids_name)
         fill_consistent(ids, leave_empty=0.5, skip_complex=False)

{imas_python-1.1.2.dev54 → imas_python-1.1.2.dev55/imas_python.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: imas-python
-Version: 1.1.2.dev54
+Version: 1.1.2.dev55
 Summary: Pythonic wrappers for the IMAS Access Layer
 Author: ITER Organization
 Author-email: Karel Lucas van de Plassche <karelvandeplassche@gmail.com>, Daan van Vugt <dvanvugt@ignitioncomputing.com>, Maarten Sebregts <msebregts@ignitioncomputing.com>, imas-support@iter.org

imas_python-1.1.2.dev55/imas_python.egg-info/SOURCES.txt

@@ -0,0 +1,220 @@
+.git-blame-ignore-revs
+.git_archival.txt
+.gitattributes
+.gitignore
+.pylintrc
+.readthedocs.yml
+CODE_OF_CONDUCT.md
+CONTRIBUTING.md
+LICENSE.txt
+MANIFEST.in
+README.md
+asv.conf.json
+conftest.py
+pyproject.toml
+setup.cfg
+setup.py
+.github/workflows/linting.yml
+.github/workflows/publish.yml
+benchmarks/__init__.py
+benchmarks/core_profiles.py
+benchmarks/edge_profiles.py
+benchmarks/technical.py
+benchmarks/utils.py
+ci/build_dd_zip.sh
+ci/build_docs_and_dist.sh
+ci/linting.sh
+ci/run_benchmark.sh
+ci/run_pytest.sh
+docs/.gitignore
+docs/Makefile
+docs/source/.gitignore
+docs/source/api-hidden.rst
+docs/source/api.rst
+docs/source/benchmarking.rst
+docs/source/changelog.rst
+docs/source/ci_config.rst
+docs/source/cli.rst
+docs/source/code_style.rst
+docs/source/conf.py
+docs/source/configuring.rst
+docs/source/identifiers.rst
+docs/source/imas_architecture.rst
+docs/source/imas_structure.png
+docs/source/index.rst
+docs/source/installing.rst
+docs/source/intro.rst
+docs/source/lazy_loading.rst
+docs/source/mdsplus.rst
+docs/source/metadata.rst
+docs/source/multi-dd.rst
+docs/source/netcdf.rst
+docs/source/release_imas.rst
+docs/source/resampling.rst
+docs/source/validation.rst
+docs/source/_static/imas.css
+docs/source/_static/imas_200x200.png
+docs/source/_templates/custom-class-template.rst
+docs/source/_templates/custom-module-template.rst
+docs/source/_templates/layout.html
+docs/source/_templates/autosummary/accessor.rst
+docs/source/_templates/autosummary/accessor_attribute.rst
+docs/source/_templates/autosummary/accessor_callable.rst
+docs/source/_templates/autosummary/accessor_method.rst
+docs/source/_templates/autosummary/base.rst
+docs/source/courses/advanced_user_training.rst
+docs/source/courses/basic_user_training.rst
+docs/source/courses/advanced/dd_versions.rst
+docs/source/courses/advanced/explore.rst
+docs/source/courses/advanced/hashing.rst
+docs/source/courses/advanced/metadata.rst
+docs/source/courses/advanced/xarray.rst
+docs/source/courses/advanced/imas_snippets/alternative_coordinates.py
+docs/source/courses/advanced/imas_snippets/autoconvert_get.py
+docs/source/courses/advanced/imas_snippets/autoconvert_put.py
+docs/source/courses/advanced/imas_snippets/calc_with_units.py
+docs/source/courses/advanced/imas_snippets/coordinates.py
+docs/source/courses/advanced/imas_snippets/dd_versions.py
+docs/source/courses/advanced/imas_snippets/explore_data.py
+docs/source/courses/advanced/imas_snippets/explore_structures.py
+docs/source/courses/advanced/imas_snippets/hashing.py
+docs/source/courses/advanced/imas_snippets/ids_convert.py
+docs/source/courses/advanced/imas_snippets/ids_to_xarray.py
+docs/source/courses/advanced/imas_snippets/tensorized_ids_to_xarray.py
+docs/source/courses/basic/analyze.rst
+docs/source/courses/basic/core_profiles_ne_timeslice.png
+docs/source/courses/basic/core_profiles_te.png
+docs/source/courses/basic/create.rst
+docs/source/courses/basic/explore.rst
+docs/source/courses/basic/imas_inspect.png
+docs/source/courses/basic/interactive_tab_core_profiles_toplevel.png
+docs/source/courses/basic/print_tree_ids_properties.png
+docs/source/courses/basic/setup.rst
+docs/source/courses/basic/transform.rst
+docs/source/courses/basic/imas_snippets/create_core_profiles.py
+docs/source/courses/basic/imas_snippets/explore_public_ec_launchers.py
+docs/source/courses/basic/imas_snippets/explore_public_pf_active.py
+docs/source/courses/basic/imas_snippets/explore_training_data.py
+docs/source/courses/basic/imas_snippets/find_paths.py
+docs/source/courses/basic/imas_snippets/iterate_core_profiles.py
+docs/source/courses/basic/imas_snippets/plot_core_profiles_ne_timeslice.py
+docs/source/courses/basic/imas_snippets/plot_core_profiles_te.py
+docs/source/courses/basic/imas_snippets/print_idss.py
+docs/source/courses/basic/imas_snippets/read_core_profiles_ne_timeslice.py
+docs/source/courses/basic/imas_snippets/read_equilibrium_time_array.py
+docs/source/courses/basic/imas_snippets/read_whole_equilibrium.py
+docs/source/courses/basic/imas_snippets/transform_grid.py
+docs/source/netcdf/conventions.rst
+imas/__init__.py
+imas/__main__.py
+imas/_util.py
+imas/_version.py
+imas/db_entry.py
+imas/dd_helpers.py
+imas/dd_zip.py
+imas/exception.py
+imas/ids_base.py
+imas/ids_convert.py
+imas/ids_coordinates.py
+imas/ids_data_type.py
+imas/ids_defs.py
+imas/ids_factory.py
+imas/ids_identifiers.py
+imas/ids_metadata.py
+imas/ids_path.py
+imas/ids_primitive.py
+imas/ids_struct_array.py
+imas/ids_structure.py
+imas/ids_toplevel.py
+imas/setup_logging.py
+imas/training.py
+imas/util.py
+imas/assets/IDSDef.zip
+imas/assets/IDSDef2MDSpreTree.xsl
+imas/assets/IDS_fake_toplevel.xml
+imas/assets/IDS_minimal.xml
+imas/assets/IDS_minimal_2.xml
+imas/assets/IDS_minimal_struct_array.xml
+imas/assets/IDS_minimal_types.xml
+imas/assets/ITER_134173_106_core_profiles.ids
+imas/assets/ITER_134173_106_equilibrium.ids
+imas/assets/README.md
+imas/assets/core_profiles.ids
+imas/assets/equilibrium.ids
+imas/backends/__init__.py
+imas/backends/db_entry_impl.py
+imas/backends/imas_core/__init__.py
+imas/backends/imas_core/al_context.py
+imas/backends/imas_core/db_entry_al.py
+imas/backends/imas_core/db_entry_helpers.py
+imas/backends/imas_core/imas_interface.py
+imas/backends/imas_core/mdsplus_model.py
+imas/backends/imas_core/uda_support.py
+imas/backends/netcdf/__init__.py
+imas/backends/netcdf/db_entry_nc.py
+imas/backends/netcdf/ids2nc.py
+imas/backends/netcdf/nc2ids.py
+imas/backends/netcdf/nc_metadata.py
+imas/backends/netcdf/nc_validate.py
+imas/command/cli.py
+imas/command/db_analysis.py
+imas/command/helpers.py
+imas/command/timer.py
+imas/test/test_all_dd_versions.py
+imas/test/test_cli.py
+imas/test/test_dbentry.py
+imas/test/test_dd_helpers.py
+imas/test/test_dd_zip.py
+imas/test/test_deepcopy.py
+imas/test/test_exception.py
+imas/test/test_get_sample.py
+imas/test/test_hash.py
+imas/test/test_helpers.py
+imas/test/test_identifiers.py
+imas/test/test_ids2nc.py
+imas/test/test_ids_ascii_data.py
+imas/test/test_ids_convert.py
+imas/test/test_ids_coordinates.py
+imas/test/test_ids_data_type.py
+imas/test/test_ids_factory.py
+imas/test/test_ids_metadata.py
+imas/test/test_ids_mixin.py
+imas/test/test_ids_path.py
+imas/test/test_ids_primitive.py
+imas/test/test_ids_struct_array.py
+imas/test/test_ids_structure.py
+imas/test/test_ids_toplevel.py
+imas/test/test_ids_validate.py
+imas/test/test_latest_dd_autofill.py
+imas/test/test_latest_dd_manual.py
+imas/test/test_latest_dd_resample.py
+imas/test/test_lazy_loading.py
+imas/test/test_list_occurrences.py
+imas/test/test_minimal.py
+imas/test/test_minimal_conversion.py
+imas/test/test_minimal_io.py
+imas/test/test_minimal_struct_array_io.py
+imas/test/test_minimal_types.py
+imas/test/test_minimal_types_io.py
+imas/test/test_minimal_types_io_automatic.py
+imas/test/test_nbc_change.py
+imas/test/test_nc_autofill.py
+imas/test/test_nc_entry.py
+imas/test/test_nc_metadata.py
+imas/test/test_nc_validation.py
+imas/test/test_snippets.py
+imas/test/test_static_ids.py
+imas/test/test_str_1d.py
+imas/test/test_time_slicing.py
+imas/test/test_uda_support.py
+imas/test/test_util.py
+imas_python.egg-info/PKG-INFO
+imas_python.egg-info/SOURCES.txt
+imas_python.egg-info/dependency_links.txt
+imas_python.egg-info/entry_points.txt
+imas_python.egg-info/not-zip-safe
+imas_python.egg-info/requires.txt
+imas_python.egg-info/top_level.txt
+tools/compare_lowlevel_access_patterns.py
+tools/extract_test_data.py
+tools/get_tagnames.py

imas_python-1.1.2.dev54/imas/assets/IDSDef/identifiers/core_instant_changes/core_instant_changes_identifier.xml

@@ -1,15 +0,0 @@
-<?xml version="1.0"?>
-<constants name="core_instant_changes_identifier" identifier="yes" create_mapping_function="yes">
-<header>
-Translation table for types of instant changes to the plasma state.
-</header>
-
-<idsInstance xpath="/core_instant_changes/change/identifier"/>
-
-<int name="unspecified"        description="Unspecified instant changes"                               >0</int>
-<int name="total"              description="Total instant changes; combines all types of events"       >1</int>
-<int name="pellet"             description="Instant changes from a pellet"                             >2</int>
-<int name="sawtooth"           description="Instant changes from a sawtooth"                           >3</int>
-<int name="elm"                description="Instant changes from an edge localised mode"               >4</int>
-
-</constants>

imas_python-1.1.2.dev54/imas/assets/IDSDef/identifiers/core_sources/core_source_identifier.xml

@@ -1,76 +0,0 @@
-<?xml version="1.0"?>
-<constants name="core_source" identifier="yes" create_mapping_function="yes">
-<header>
-Translation table for sources of particles, momentum and heat.
-</header>
-<!-- Some lines and indices are common with the edge_sources/source/identifier --> 
-
-<ddInstance xpath="/core_sources/source/identifier"/>
-
-<int name="unspecified"             description="Unspecified source type"                                                         >0</int>
-<int name="total"                   description="Total source; combines all sources"                                              >1</int>
-<int name="nbi"                     description="Source from Neutral Beam Injection"                                              >2</int>
-<int name="ec"                      description="Sources from electron cyclotron heating and current drive"               >3</int>
-<int name="lh"                      description="Sources from lower hybrid heating and current drive"                             >4</int>
-<int name="ic"                      description="Sources from heating at the ion cyclotron range of frequencies"                  >5</int>
-<int name="fusion"                  description="Sources from fusion reactions, e.g. alpha particle heating"                      >6</int>
-<int name="ohmic"                   description="Source from ohmic heating"                                                       >7</int>
-<int name="bremsstrahlung"          description="Source from bremsstrahlung; radiation losses are negative sources"                >8</int>
-<int name="synchrotron_radiation"   description="Source from synchrotron radiation; radiation losses are negative sources"         >9</int>
-<int name="line_radiation"          description="Source from line radiation; radiation losses are negative sources"               >10</int>
-<int name="collisional_equipartition" description="Collisional equipartition"                                                     >11</int>
-<int name="cold_neutrals"           description="Source of cold neutrals"                                                         >12</int>
-<int name="bootstrap_current"       description="Bootstrap current"                                                               >13</int>
-<int name="pellet"                  description="Sources from injection"                                                          >14</int>
-
-<int name="auxiliary"               description="Source from auxiliary systems, e.g. heating and current drive systems"           >100</int>
-<int name="ic_nbi"                  description="A combination of the ic and nbi sources"                                         >101</int>
-<int name="ic_fusion"               description="A combination of the ic and fusion sources"                                      >102</int>
-<int name="ic_nbi_fusion"           description="A combination of the ic and fusion sources"                                      >103</int>
-<int name="ec_lh"                   description="A combination of the ec and lh sources"                                          >104</int>
-<int name="ec_ic"                   description="A combination of the ec and ic sources"                                          >105</int>
-<int name="lh_ic"                   description="A combination of the lh and ic sources"                                          >106</int>
-<int name="ec_lh_ic"                description="A combination of the ec, lh and ic sources"                                      >107</int>
-<int name="gas_puff"                description="Gas puff"                                                                        >108</int>
-<int name="killer_gas_puff"         description="Killer gas puff"                                                                 >109</int>
-
-<int name="radiation"               description="Total radiation source; radiation losses are negative sources"                         >200</int>
-<int name="cyclotron_radiation"     description="Source from cyclotron radiation; radiation losses are negative sources"          >201</int>
-<int name="cyclotron_synchrotron_radiation" description="Source from combined cyclotron and synchrotron radiation; radiation losses are negative sources"  >202</int>
-<int name="impurity_radiation"      description="Line radiation and Bremsstrahlung source; radiation losses are negative sources." >203</int>
-
-<int name="particles_to_wall"       description="Particle pumping by the wall; negative source for plasma and positive source for the wall" >303</int>
-<int name="particles_to_pump"       description="Particle pumping by external pump; negative source for plasma and positive source for the pump" >304</int>
-<int name="charge_exchange"        description="Source from charge exchange. Charge exchange losses are negative sources"                                   >305</int>
-
-<int name="transport"               description="Source term related to transport processes"                                      >400</int>
-<int name="neoclassical"            description="Source term related to neoclassical processes"                                   >401</int>
-<int name="equipartition"           description="Equipartition due to collisions and turbulence"                                  >402</int>
-<int name="turbulent_equipartition" description="Turbulent equipartition"                                                         >403</int>
-
-<int name="runaways"                description="Source from run-away processes; includes both electron and ion run-away"         >501</int>
-
-<int name="ionisation"                description="Source from ionisation processes (not accounting for charge exchange)"         >601</int>
-<int name="recombination"          description="Source from recombination processes (not accounting for charge exchange)"   >602</int>
-<int name="excitation"            description="Source from excitation processes"            >603</int>
-
-<int name="database"                description="Source from database entry"                                                      >801</int>
-<int name="gaussian"                description="Artificial source with a gaussian profile"                                       >802</int>
-
-<int name="custom_1"      description="Custom source terms 1; content to be decided by data provided"                             >901</int>
-<int name="custom_2"      description="Custom source terms 2; content to be decided by data provided"                             >902</int>
-<int name="custom_3"      description="Custom source terms 3; content to be decided by data provided"                             >903</int>
-<int name="custom_4"      description="Custom source terms 4; content to be decided by data provided"                             >904</int>
-<int name="custom_5"      description="Custom source terms 5; content to be decided by data provided"                             >905</int>
-<int name="custom_6"      description="Custom source terms 6; content to be decided by data provided"                             >906</int>
-<int name="custom_7"      description="Custom source terms 7; content to be decided by data provided"                             >907</int>
-<int name="custom_8"      description="Custom source terms 8; content to be decided by data provided"                             >908</int>
-<int name="custom_9"      description="Custom source terms 9; content to be decided by data provided"                             >909</int>
-
-<!-- Not sure what these sources represents?
-<int name="background"              description="Background source"                                                               >28</int>
-<int name="impurity"                description="Impurity source"                                                                 >29</int>
-<int name="cold_neutral_cooling"    description="Cold neutrals from the edge that enters the plasma"                              >24</int>
--->
-
-</constants>

imas_python-1.1.2.dev54/imas/assets/IDSDef/identifiers/core_transport/core_transport_identifier.xml

@@ -1,25 +0,0 @@
-<?xml version="1.0"?>
-<constants name="core_transport_identifier" identifier="yes" create_mapping_function="yes">
-<header>
-  Translation table for different types of transport coefficients.
-</header>
-<!-- Some lines and indices are common with the edge_transport/model/identifier --> 
-
-<ddInstance xpath="/core_transport/model/"/>
-
-<int name="unspecified"             description="Unspecified transport type" >0</int>
-<int name="combined"                description="Combination of data from available transport models. Representation of the total transport in the system" >1</int>
-<int name="transport_solver"        description="Output from a transport solver" >2</int>
-<int name="background"              description="Background transport level, ad-hoc transport model not directly related to a physics model" >3</int>
-<int name="database"                description="Transport specified by a database entry external to the dynamic evolution of the plasma" >4</int>
-<int name="neoclassical"            description="Neoclassical" >5</int>
-<int name="anomalous"               description="Representation of turbulent transport" >6</int>
-<int name="mhd"                     description="Transport arising from MHD frequency modes" >19</int>
-<int name="ntm"                     description="Transport arising from the presence of NTMs" >20</int>
-<int name="sawteeth"                description="Transport arising from the presence of sawteeth" >21</int>
-<int name="elm_continuous"          description="Continuous ELM model --- gives the ELM averaged profile" >22</int>
-<int name="elm_resolved"            description="Time resolved ELM model" >23</int>
-<int name="pedestal"                description="Transport level to give edge pedestal" >24</int>
-<int name="not_provided"            description="No data provided" >25</int>
-
-</constants>

imas_python-1.1.2.dev54/imas/assets/IDSDef/identifiers/edge_sources/edge_source_identifier.xml

@@ -1,31 +0,0 @@
-<?xml version="1.0"?>
-<constants name="edge_source" identifier="yes" create_mapping_function="yes">
-<header>
-Translation table for sources of particles, momentum and heat.
-</header>
-<!-- Some lines and indices are common with the core_sources/source/identifier --> 
-<ddInstance xpath="/edge_sources/source/identifier"/>
-
-<int name="unspecified"            	description="Unspecified source type"                                       >0</int>
-
-<int name="total"               	description="Combined source excluding time derivative"                     >1</int>
-<int name="neutrals"    			description="Combined source from all plasma-neutrals interactions"        >701</int>
-<int name="total_linearized"    description="Combined source (linearized) excluding time derivative"        >702</int>
-<int name="background"             description="Background source"                                             >703</int>
-<int name="database"               description="Source from database entry"                                    >801</int>
-<int name="prescribed"             description="Source prescribed from code input parameters"                  >705</int>
-<int name="time_derivative"        description="Source associated with time derivative"                        >706</int>
-<int name="atomic_ionization"      description="Source from atomic ionization"                                 >707</int>
-<int name="molecular_ionization"   description="Source from molecular ionization/dissociation"                 >708</int>
-<int name="ionization"             description="Source from ionization (combined)"                             >709</int>
-<int name="recombination"          description="Source from recombination"                                     >710</int>
-
-<int name="charge_exchange"        description="Source from charge exchange. Charge exchange losses are negative sources"  >305</int>
-<int name="collisional_equipartition" description="Collisional equipartition"                                                     >11</int>
-<int name="ohmic"                   description="Source from ohmic heating"                                                       >7</int>
-<int name="radiation"              description="Source from line + recombination assisted + bremsstrahlung"     >200</int>
-
-<int name="compression"            description="Internal energy source from compression"                       >715</int>
-<int name="bulk_motion"            description="Internal energy source correction for bulk motion"             >716</int>
-
-</constants>

imas_python-1.1.2.dev54/imas/assets/IDSDef/identifiers/edge_transport/edge_transport_identifier.xml

@@ -1,25 +0,0 @@
-<?xml version="1.0"?>
-<constants name="edge_transport" identifier="yes" create_mapping_function="yes">
-<header>
-  Translation table for different types of transport coefficients.
-</header>
-<!-- Some lines and indices are common with the core_transport/model/identifier --> 
-
-<ddInstance xpath="/edge_transport/model/"/>
-
-<int name="unspecified"                    description="Unspecified transport type"                                                                >0</int>
-<int name="combined"                       description="Combination of data from all available transport models"                                             >1</int>
-              
-<int name="combined_radial"                description="Combination of data from all available radial transport models"                            >100</int>
-<int name="background_radial"              description="Background radial transport level"                                                         >101</int>
-<int name="database_radial"                description="Radial transport specified by a database entry"                                            >102</int>
-<int name="prescribed_radial"              description="Radial transport model prescribed from code input parameters"                              >103</int>
-
-<int name="combined_parallel"              description="Combination of data from all available radial transport models"                            >200</int>
-<int name="background_parallel"            description="Background radial transport level"                                                         >201</int>
-<int name="database_parallel"              description="Radial transport specified by a database entry"                                            >202</int>
-<int name="prescribed_parallel"            description="Radial transport model prescribed from code input parameters"                              >203</int>
-<int name="twenty_one_moment_parallel"     description="21 moment fluid closure model"                                                             >204</int>
-<int name="braginskii_parallel"            description="Braginskii fluid transport model"                                                          >205</int>
-
-</constants>

imas_python-1.1.2.dev54/imas/assets/IDSDef/identifiers/em_coupling/em_coupling_quantity_identifier.xml

@@ -1,27 +0,0 @@
-<?xml version="1.0"?>
-<constants name="em_coupling_quantity_identifier" identifier="yes" create_mapping_function="yes">
-<header>
-  Physical quantity described in the user-defined em_coupling matrix
-</header>
-
-<ddInstance xpath="/em_coupling/coupling_matrix/quantity"/>
-
-<int name="magnetic_flux"      description="Magnetic flux"     >1</int>
-<int name="b_field"   description="Magnetic field, in the direction set by each target of the coupling matrix"  >2</int>
-<int name="b_field_x"   description="Magnetic field, X component"  >3</int>
-<int name="b_field_y"   description="Magnetic field, Y component"  >4</int>
-<int name="b_field_z"   description="Magnetic field, Z component"  >5</int>
-<int name="b_field_r"   description="Magnetic field, major radius component"  >6</int>
-<int name="db_field_x_dx"   description="Gradient of magnetic field X component along the X coordinate"  >7</int>
-<int name="db_field_x_dy"   description="Gradient of magnetic field X component along the Y coordinate"  >8</int>
-<int name="db_field_x_dz"   description="Gradient of magnetic field X component along the Z coordinate"  >9</int>
-<int name="db_field_y_dx"   description="Gradient of magnetic field Y component along the X coordinate"  >10</int>
-<int name="db_field_y_dy"   description="Gradient of magnetic field Y component along the Y coordinate"  >11</int>
-<int name="db_field_y_dz"   description="Gradient of magnetic field Y component along the Z coordinate"  >12</int>
-<int name="db_field_z_dx"   description="Gradient of magnetic field Z component along the X coordinate"  >13</int>
-<int name="db_field_z_dy"   description="Gradient of magnetic field Z component along the Y coordinate"  >14</int>
-<int name="db_field_z_dz"   description="Gradient of magnetic field Z component along the Z coordinate"  >15</int>
-<int name="db_field_r_dr"   description="Gradient of magnetic field major radius component along the major radius coordinate"  >16</int>
-<int name="db_field_r_dz"   description="Gradient of magnetic field major radius component along the Z coordinate"  >17</int>
-<int name="db_field_z_dr"   description="Gradient of magnetic field Z component along the major radius coordinate"  >18</int>
-</constants>