iita-python 1.0.2__tar.gz → 1.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (24) hide show
  1. {iita_python-1.0.2/iita_python.egg-info → iita_python-1.2}/PKG-INFO +2 -2
  2. {iita_python-1.0.2 → iita_python-1.2}/README.md +1 -1
  3. {iita_python-1.0.2 → iita_python-1.2}/iita_python/_version.py +3 -3
  4. iita_python-1.2/iita_python/additional_ce.py +101 -0
  5. {iita_python-1.0.2 → iita_python-1.2}/iita_python/dataset.py +20 -7
  6. {iita_python-1.0.2 → iita_python-1.2}/iita_python/quasiorder.py +3 -13
  7. {iita_python-1.0.2 → iita_python-1.2/iita_python.egg-info}/PKG-INFO +2 -2
  8. {iita_python-1.0.2 → iita_python-1.2}/iita_python.egg-info/SOURCES.txt +2 -5
  9. iita_python-1.0.2/test_ipynbs/fit_metrics.ipynb +0 -235
  10. iita_python-1.0.2/test_ipynbs/pisa.csv +0 -340
  11. iita_python-1.0.2/test_ipynbs/quasi-order-gen.ipynb +0 -219
  12. iita_python-1.0.2/test_ipynbs/sim_missing_data.ipynb +0 -176
  13. {iita_python-1.0.2 → iita_python-1.2}/.github/workflows/release.yaml +0 -0
  14. {iita_python-1.0.2 → iita_python-1.2}/.gitignore +0 -0
  15. {iita_python-1.0.2 → iita_python-1.2}/iita_python/__init__.py +0 -0
  16. {iita_python-1.0.2 → iita_python-1.2}/iita_python/fit_metrics.py +0 -0
  17. {iita_python-1.0.2 → iita_python-1.2}/iita_python/utils.py +0 -0
  18. {iita_python-1.0.2 → iita_python-1.2}/iita_python.egg-info/dependency_links.txt +0 -0
  19. {iita_python-1.0.2 → iita_python-1.2}/iita_python.egg-info/requires.txt +0 -0
  20. {iita_python-1.0.2 → iita_python-1.2}/iita_python.egg-info/top_level.txt +0 -0
  21. {iita_python-1.0.2 → iita_python-1.2}/pyproject.toml +0 -0
  22. {iita_python-1.0.2 → iita_python-1.2}/setuf.cfg +0 -0
  23. {iita_python-1.0.2 → iita_python-1.2}/setup.cfg +0 -0
  24. {iita_python-1.0.2 → iita_python-1.2}/setup.py +0 -0
{iita_python-1.0.2/iita_python.egg-info → iita_python-1.2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: iita_python
3
- Version: 1.0.2
3
+ Version: 1.2
4
4
  Summary: IITA algorithm in python
5
5
  Author-email: Aliaksei Badnarchuk <alexejbodnarchuk@gmail.com>
6
6
  Requires-Python: >=3.9
@@ -111,7 +111,7 @@ Returns: float (MSE, lower is better)
111
111
 
112
112
  ## Testing
113
113
 
114
- See the `test_ipynbs` folder. You can open the Jupyter notebooks in Google Colab and run all cells to see test results.
114
+ See the `testing` branch. You can open the Jupyter notebooks in Google Colab and run all cells to see test results.
115
115
 
116
116
  I am comparing my results on the PISA dataset to those of Milan Segedinac ([his implementation](https://github.com/milansegedinac/kst))
117
117
 
{iita_python-1.0.2 → iita_python-1.2}/README.md RENAMED
@@ -101,7 +101,7 @@ Returns: float (MSE, lower is better)
101
101
 
102
102
  ## Testing
103
103
 
104
- See the `test_ipynbs` folder. You can open the Jupyter notebooks in Google Colab and run all cells to see test results.
104
+ See the `testing` branch. You can open the Jupyter notebooks in Google Colab and run all cells to see test results.
105
105
 
106
106
  I am comparing my results on the PISA dataset to those of Milan Segedinac ([his implementation](https://github.com/milansegedinac/kst))
107
107
 
{iita_python-1.0.2 → iita_python-1.2}/iita_python/_version.py RENAMED
@@ -28,7 +28,7 @@ version_tuple: VERSION_TUPLE
28
28
  commit_id: COMMIT_ID
29
29
  __commit_id__: COMMIT_ID
30
30
 
31
- __version__ = version = '1.0.2'
32
- __version_tuple__ = version_tuple = (1, 0, 2)
31
+ __version__ = version = '1.2'
32
+ __version_tuple__ = version_tuple = (1, 2)
33
33
 
34
- __commit_id__ = commit_id = 'g481ee8703'
34
+ __commit_id__ = commit_id = 'gb97b590cd'
iita_python-1.2/iita_python/additional_ce.py ADDED
@@ -0,0 +1,101 @@
1
+ import numpy as np
2
+ import pandas as pd
3
+ import numpy.typing as npt
4
+ from typing import Self, List
5
+
6
+ from iita_python.dataset import Dataset
7
+
8
+ def pairwise_diff_ce(rp: pd.DataFrame) -> pd.DataFrame:
9
+ """
10
+ Computes counterexamples from a response pattern DataFrame by using pairwise differences of item correspondences\n
11
+ Can be used for non-binary data because of not relying on strict 0/1 values\n
12
+ Does not support missing values in the response patterns\n
13
+ """
14
+
15
+ items = rp.shape[1]
16
+ subjects = rp.shape[0]
17
+
18
+ ce = pd.DataFrame(0, index=np.arange(items), columns=np.arange(items))
19
+ for i in range(subjects):
20
+ # for subject i, if a < b, add b - a for all item pairs (a,b)
21
+ # this is equivalent to ce[a][b] += 1 if a=0 and b=1, but works for non-binary data as well
22
+
23
+ row = rp.loc[i].to_numpy()
24
+ ce -= np.clip(row[:, None] - row[None, :], None, 0)
25
+
26
+ return ce
27
+
28
+ def missing_value_substitution_ce(rp: pd.DataFrame) -> pd.DataFrame:
29
+ """
30
+ Computes counterexamples from a response pattern DataFrame by using pairwise differences of item correspondences\n
31
+ Substitutes missing values in the response patterns with the mean of the item, making some counterexample amounts fractional\n
32
+ Can be used for non-binary data because of not relying on strict 0/1 values\n
33
+ """
34
+
35
+ items = rp.shape[1]
36
+ subjects = rp.shape[0]
37
+
38
+ rp1 = rp.copy()
39
+
40
+ for i in range(items):
41
+ # substitute missing values in item i with the mean of the item
42
+ col = rp1.loc[:, i].to_numpy()
43
+ mean_val = np.nanmean(col)
44
+ col = pd.Series(col).fillna(mean_val)
45
+ rp1.loc[:, i] = col
46
+
47
+ # then calculate pairwise difference counterexamples
48
+ return pairwise_diff_ce(rp1)
49
+
50
+ def relativify(calculator: callable):
51
+ """
52
+ Decorator to relativify counterexample calculators\n
53
+ The counterexample amounts are divided by the number of cases for each item pair where both items are not missing\n
54
+ """
55
+
56
+ def wrapper(rp: pd.DataFrame):
57
+ f"""
58
+ Computes counterexamples relative to the amount of valid cases using {calculator.__name__} as base calculator\n
59
+ The counterexample amounts are divided by the number of cases for each item pair where both items are not missing\n
60
+ """
61
+
62
+ ce = calculator(rp)
63
+
64
+ items = rp.shape[1]
65
+ subjects = rp.shape[0]
66
+
67
+ valid_cases = pd.DataFrame(0, index=np.arange(items), columns=np.arange(items))
68
+ for i in range(subjects):
69
+ #for subject i, increment all cases where neither a nor b are NaN (valid case for counterexamples)
70
+ not_nan = np.logical_not(rp.loc[i].isna())
71
+ valid_cases += np.outer(not_nan, not_nan).astype(int)
72
+
73
+ # avoid division by zero
74
+ valid_cases = valid_cases.replace(0, 1)
75
+
76
+ return ce / valid_cases
77
+
78
+ return wrapper
79
+
80
+ class AdditionalCEDataset(Dataset):
81
+ def __init__(self, response_patterns: pd.DataFrame | npt.NDArray | List[List[int]]):
82
+ """
83
+ Computes the counterexamples and equivalence examples from response patterns\n
84
+ Supports pandas dataframes, numpy arrays, and python lists\n
85
+ Rows represent the subjects, columns - the items\n
86
+
87
+ In addition to the base Dataset, this class provides additional counterexample calculators:\n
88
+ - pairwise_diff_ce: computes counterexamples using pairwise differences of item correspondences, allowing for non-binary data\n
89
+ - missing_value_substitution_ce: computes counterexamples using pairwise differences with missing values substituted by item means\n
90
+ """
91
+ super().__init__(response_patterns)
92
+
93
+ self.pairwise_diff_ce = lambda self, relative=False: (
94
+ relativify(pairwise_diff_ce) if relative else pairwise_diff_ce
95
+ )(self.rp)
96
+ self.pairwise_diff_ce.__doc__ = pairwise_diff_ce.__doc__
97
+
98
+ self.missing_value_substitution_ce = lambda self, relative=False: (
99
+ relativify(missing_value_substitution_ce) if relative else missing_value_substitution_ce
100
+ )(self.rp)
101
+ self.missing_value_substitution_ce.__doc__ = missing_value_substitution_ce.__doc__
{iita_python-1.0.2 → iita_python-1.2}/iita_python/dataset.py RENAMED
@@ -31,7 +31,7 @@ class Dataset():
31
31
 
32
32
  @property
33
33
  def items(self):
34
- return self.ce.shape[0]
34
+ return self.rp.shape[1]
35
35
 
36
36
  @property
37
37
  def subjects(self):
@@ -52,31 +52,44 @@ class Dataset():
52
52
  self._eqe = None
53
53
 
54
54
  #counterexamples computation
55
- self.ce = pd.DataFrame(0, index=np.arange(self.rp.shape[1]), columns=np.arange(self.rp.shape[1]))
55
+ self.ce = pd.DataFrame(0, index=np.arange(self.items), columns=np.arange(self.items))
56
56
 
57
- for i in range(len(self.rp)):
58
- #for subject i, find all cases where a=0 and b=1 (counterexamples to b->a or a <= b) and increment where they intersect
57
+ for i in range(self.subjects):
58
+ #for subject i, increment all cases where a=0 and b=1 (counterexamples to b->a or a <= b)
59
59
  not_a = (self.rp.loc[i] == 0)
60
60
  b = (self.rp.loc[i] == 1)
61
61
  self.ce.loc[not_a, b] += 1
62
62
 
63
63
  #equivalence examples computation
64
- self.eqe = pd.DataFrame(0, index=np.arange(self.rp.shape[1]), columns=np.arange(self.rp.shape[1]))
65
- for i in range(len(self.rp)):
64
+ self.eqe = pd.DataFrame(0, index=np.arange(self.items), columns=np.arange(self.items))
65
+ for i in range(self.subjects):
66
66
  #for subject i, increment all cases where a=b (examples of equivalence of a and b)
67
67
  row = self.rp.loc[i].to_numpy()
68
68
  self.eqe += np.equal.outer(row, row).astype(int)
69
+
70
+ self.valid_ce_cases = pd.DataFrame(0, index=np.arange(self.items), columns=np.arange(self.items))
71
+ for i in range(self.subjects):
72
+ #for subject i, increment all cases where neither a nor b are NaN (valid case for counterexamples)
73
+ not_nan = np.logical_not(self.rp.loc[i].isna())
74
+ self.valid_ce_cases += np.outer(not_nan, not_nan).astype(int)
69
75
 
70
76
  def add(self, dataset_to_add: Self):
71
77
  """
72
78
  Add a second IITA_Dataset: concatenate the response patterns, add counterexamples and equivalence examples\n
73
79
  Item amounts must match, else ValueError
74
80
  """
75
- if (self.rp.shape[1] != dataset_to_add.shape[1]):
81
+ if (self.items != dataset_to_add.items):
76
82
  raise ValueError('Item amounts must match')
77
83
 
78
84
  self.rp = pd.concat(self.rp, dataset_to_add.rp)
79
85
  self.ce = self.ce + dataset_to_add.ce
80
86
  self.eqe = self.eqe + dataset_to_add.eqe
87
+
88
+ @property
89
+ def relative_ce(self) -> pd.DataFrame:
90
+ """
91
+ Returns the counterexamples matrix accounting for missing values
92
+ """
93
+ return self.ce / self.valid_ce_cases
81
94
 
82
95
  __iadd__ = add
{iita_python-1.0.2 → iita_python-1.2}/iita_python/quasiorder.py RENAMED
@@ -23,30 +23,20 @@ class QuasiOrder:
23
23
  return edge_list
24
24
 
25
25
  def unfold_examples(
26
- matrix: pd.DataFrame,
27
- relativity: npt.NDArray | None = None,
28
- dtype=np.float32
26
+ matrix: pd.DataFrame
29
27
  ) -> npt.NDArray:
30
28
  """
31
29
  Turns an item/item metric DataFrame into
32
30
  a list of tuples of the form (x, [i, j]), where matrix[i, j] = x.\n
33
- Can input a relativity matrix, then exery x gets divided by relativity[i, j].
34
- This can be used to account for missing values
35
31
  """
36
32
 
37
- dfmatrix = pd.DataFrame(matrix).astype(dtype)
38
-
39
- rel = relativity
40
- if (rel is None):
41
- rel = np.ones(dfmatrix.shape, dtype=int)
42
-
43
- dfmatrix = dfmatrix / rel
33
+ dfmatrix = pd.DataFrame(matrix)
44
34
 
45
35
  n = dfmatrix.shape[0]
46
36
  pos = np.arange(n, dtype=np.int_)
47
37
  i = np.repeat(pos, n)
48
38
  j = np.tile(pos, n)
49
- res = np.array(list(zip(dfmatrix.to_numpy()[i, j], i, j)), dtype=np.int_)
39
+ res = np.array(list(zip(dfmatrix.to_numpy()[i, j], i, j)))
50
40
  return res[res[:, 1] != res[:, 2]]
51
41
 
52
42
  def ind_gen(counterexamples: npt.NDArray, n: int) -> list[QuasiOrder]:
{iita_python-1.0.2 → iita_python-1.2/iita_python.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: iita_python
3
- Version: 1.0.2
3
+ Version: 1.2
4
4
  Summary: IITA algorithm in python
5
5
  Author-email: Aliaksei Badnarchuk <alexejbodnarchuk@gmail.com>
6
6
  Requires-Python: >=3.9
@@ -111,7 +111,7 @@ Returns: float (MSE, lower is better)
111
111
 
112
112
  ## Testing
113
113
 
114
- See the `test_ipynbs` folder. You can open the Jupyter notebooks in Google Colab and run all cells to see test results.
114
+ See the `testing` branch. You can open the Jupyter notebooks in Google Colab and run all cells to see test results.
115
115
 
116
116
  I am comparing my results on the PISA dataset to those of Milan Segedinac ([his implementation](https://github.com/milansegedinac/kst))
117
117
 
{iita_python-1.0.2 → iita_python-1.2}/iita_python.egg-info/SOURCES.txt RENAMED
@@ -6,6 +6,7 @@ setup.py
6
6
  .github/workflows/release.yaml
7
7
  iita_python/__init__.py
8
8
  iita_python/_version.py
9
+ iita_python/additional_ce.py
9
10
  iita_python/dataset.py
10
11
  iita_python/fit_metrics.py
11
12
  iita_python/quasiorder.py
@@ -14,8 +15,4 @@ iita_python.egg-info/PKG-INFO
14
15
  iita_python.egg-info/SOURCES.txt
15
16
  iita_python.egg-info/dependency_links.txt
16
17
  iita_python.egg-info/requires.txt
17
- iita_python.egg-info/top_level.txt
18
- test_ipynbs/fit_metrics.ipynb
19
- test_ipynbs/pisa.csv
20
- test_ipynbs/quasi-order-gen.ipynb
21
- test_ipynbs/sim_missing_data.ipynb
18
+ iita_python.egg-info/top_level.txt
iita_python-1.0.2/test_ipynbs/fit_metrics.ipynb DELETED
@@ -1,235 +0,0 @@
1
- {
2
- "cells": [
3
- {
4
- "cell_type": "markdown",
5
- "id": "aefc5a77",
6
- "metadata": {
7
- "id": "aefc5a77"
8
- },
9
- "source": [
10
- "# Testing the fit metric calculation on the PISA dataset, comparing to the KST library by Milan Segedinac"
11
- ]
12
- },
13
- {
14
- "cell_type": "markdown",
15
- "source": [
16
- "1. Imporitng both libraries and requirements"
17
- ],
18
- "metadata": {
19
- "id": "dzpt8hYXs7kO"
20
- },
21
- "id": "dzpt8hYXs7kO"
22
- },
23
- {
24
- "cell_type": "code",
25
- "source": [
26
- "!git clone https://github.com/Alexe1900/iita_python.git\n",
27
- "!git clone https://github.com/milansegedinac/kst.git\n",
28
- "!pip install numpy\n",
29
- "!pip install pandas\n",
30
- "import sys\n",
31
- "sys.path.append(\"/content/iita_python\")\n",
32
- "sys.path.append(\"/content/kst\")\n",
33
- "import numpy as np\n",
34
- "import pandas as pd\n",
35
- "import iita_python as test_iita\n",
36
- "import learning_spaces.kst as kst"
37
- ],
38
- "metadata": {
39
- "id": "s4P_gsz7tDlG",
40
- "outputId": "03b37282-44e0-43f1-996e-ba3de8248eab",
41
- "colab": {
42
- "base_uri": "https://localhost:8080/"
43
- }
44
- },
45
- "id": "s4P_gsz7tDlG",
46
- "execution_count": 1,
47
- "outputs": [
48
- {
49
- "output_type": "stream",
50
- "name": "stdout",
51
- "text": [
52
- "fatal: destination path 'iita_python' already exists and is not an empty directory.\n",
53
- "fatal: destination path 'kst' already exists and is not an empty directory.\n",
54
- "Requirement already satisfied: numpy in /usr/local/lib/python3.12/dist-packages (2.0.2)\n",
55
- "Requirement already satisfied: pandas in /usr/local/lib/python3.12/dist-packages (2.2.2)\n",
56
- "Requirement already satisfied: numpy>=1.26.0 in /usr/local/lib/python3.12/dist-packages (from pandas) (2.0.2)\n",
57
- "Requirement already satisfied: python-dateutil>=2.8.2 in /usr/local/lib/python3.12/dist-packages (from pandas) (2.9.0.post0)\n",
58
- "Requirement already satisfied: pytz>=2020.1 in /usr/local/lib/python3.12/dist-packages (from pandas) (2025.2)\n",
59
- "Requirement already satisfied: tzdata>=2022.7 in /usr/local/lib/python3.12/dist-packages (from pandas) (2025.2)\n",
60
- "Requirement already satisfied: six>=1.5 in /usr/local/lib/python3.12/dist-packages (from python-dateutil>=2.8.2->pandas) (1.17.0)\n"
61
- ]
62
- }
63
- ]
64
- },
65
- {
66
- "cell_type": "markdown",
67
- "source": [
68
- "2. Importing the dataset, generating quasi-orders"
69
- ],
70
- "metadata": {
71
- "id": "Wwxr0c_rtSMN"
72
- },
73
- "id": "Wwxr0c_rtSMN"
74
- },
75
- {
76
- "cell_type": "code",
77
- "source": [
78
- "from iita_python.utils import read_rp\n",
79
- "\n",
80
- "data_raw = read_rp(\"iita_python/test_ipynbs/pisa.csv\")\n",
81
- "data = test_iita.Dataset(data_raw)\n",
82
- "\n",
83
- "unfolded_ce = test_iita.unfold_examples(data.counterexamples)\n",
84
- "qos = test_iita.ind_gen(unfolded_ce, data.items)"
85
- ],
86
- "metadata": {
87
- "id": "7CZKj4kktWg6"
88
- },
89
- "id": "7CZKj4kktWg6",
90
- "execution_count": 2,
91
- "outputs": []
92
- },
93
- {
94
- "cell_type": "markdown",
95
- "source": [
96
- "3. Testing the fit metrics"
97
- ],
98
- "metadata": {
99
- "id": "t-RqTjTEuBUo"
100
- },
101
- "id": "t-RqTjTEuBUo"
102
- },
103
- {
104
- "cell_type": "markdown",
105
- "source": [
106
- "3.1. Original IITA fit metric"
107
- ],
108
- "metadata": {
109
- "id": "oXyUJR12jT22"
110
- },
111
- "id": "oXyUJR12jT22"
112
- },
113
- {
114
- "cell_type": "code",
115
- "source": [
116
- "import iita_python.fit_metrics as test_fit\n",
117
- "corrects = kst.iita(data.response_patterns, 3)['diff']\n",
118
- "\n",
119
- "for i, qo in enumerate(qos):\n",
120
- " test_metric = round(test_fit.orig_iita_fit(data, qo), 3)\n",
121
- " corr_metric = round(corrects[i], 3)\n",
122
- "\n",
123
- " try:\n",
124
- " assert (test_metric == corr_metric)\n",
125
- " print(f'Fit metric {i}/{len(qos)} correct ✅')\n",
126
- " except AssertionError:\n",
127
- " print(f'Fit metric {i}/{len(qos)} incorrect ❌')\n",
128
- " print(f'Test: {test_metric}')\n",
129
- " print(f'Correct: {corr_metric}')"
130
- ],
131
- "metadata": {
132
- "id": "a5IvxR1I7-BG",
133
- "outputId": "abc3c1be-79b3-4721-9c7c-a6e0e6669ba7",
134
- "colab": {
135
- "base_uri": "https://localhost:8080/"
136
- }
137
- },
138
- "id": "a5IvxR1I7-BG",
139
- "execution_count": 8,
140
- "outputs": [
141
- {
142
- "output_type": "stream",
143
- "name": "stdout",
144
- "text": [
145
- "Fit metric 0/13 correct ✅\n",
146
- "Fit metric 1/13 correct ✅\n",
147
- "Fit metric 2/13 correct ✅\n",
148
- "Fit metric 3/13 correct ✅\n",
149
- "Fit metric 4/13 correct ✅\n",
150
- "Fit metric 5/13 correct ✅\n",
151
- "Fit metric 6/13 correct ✅\n",
152
- "Fit metric 7/13 correct ✅\n",
153
- "Fit metric 8/13 correct ✅\n",
154
- "Fit metric 9/13 correct ✅\n",
155
- "Fit metric 10/13 correct ✅\n",
156
- "Fit metric 11/13 correct ✅\n",
157
- "Fit metric 12/13 correct ✅\n"
158
- ]
159
- }
160
- ]
161
- },
162
- {
163
- "cell_type": "markdown",
164
- "source": [
165
- "3.2. Corrected fit metric"
166
- ],
167
- "metadata": {
168
- "id": "VIPtCas5jXP3"
169
- },
170
- "id": "VIPtCas5jXP3"
171
- },
172
- {
173
- "cell_type": "code",
174
- "source": [
175
- "corrects = kst.iita(data.response_patterns, 2)['diff']\n",
176
- "\n",
177
- "for i, qo in enumerate(qos):\n",
178
- " test_metric = round(test_fit.corr_iita_fit(data, qo), 3)\n",
179
- " corr_metric = round(corrects[i], 3)\n",
180
- "\n",
181
- " try:\n",
182
- " assert (test_metric == corr_metric)\n",
183
- " print(f'Fit metric {i}/{len(qos)} correct ✅')\n",
184
- " except AssertionError:\n",
185
- " print(f'Fit metric {i}/{len(qos)} incorrect ❌')\n",
186
- " print(f'Test: {test_metric}')\n",
187
- " print(f'Correct: {corr_metric}')"
188
- ],
189
- "metadata": {
190
- "id": "j1LoyigWjc5t",
191
- "outputId": "bd2ca738-1a94-4ce8-b507-325a1acdf9e1",
192
- "colab": {
193
- "base_uri": "https://localhost:8080/"
194
- }
195
- },
196
- "id": "j1LoyigWjc5t",
197
- "execution_count": 9,
198
- "outputs": [
199
- {
200
- "output_type": "stream",
201
- "name": "stdout",
202
- "text": [
203
- "Fit metric 0/13 correct ✅\n",
204
- "Fit metric 1/13 correct ✅\n",
205
- "Fit metric 2/13 correct ✅\n",
206
- "Fit metric 3/13 correct ✅\n",
207
- "Fit metric 4/13 correct ✅\n",
208
- "Fit metric 5/13 correct ✅\n",
209
- "Fit metric 6/13 correct ✅\n",
210
- "Fit metric 7/13 correct ✅\n",
211
- "Fit metric 8/13 correct ✅\n",
212
- "Fit metric 9/13 correct ✅\n",
213
- "Fit metric 10/13 correct ✅\n",
214
- "Fit metric 11/13 correct ✅\n",
215
- "Fit metric 12/13 correct ✅\n"
216
- ]
217
- }
218
- ]
219
- }
220
- ],
221
- "metadata": {
222
- "language_info": {
223
- "name": "python"
224
- },
225
- "colab": {
226
- "provenance": []
227
- },
228
- "kernelspec": {
229
- "name": "python3",
230
- "display_name": "Python 3"
231
- }
232
- },
233
- "nbformat": 4,
234
- "nbformat_minor": 5
235
- }
iita_python-1.0.2/test_ipynbs/pisa.csv DELETED
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iita_python-1.0.2/test_ipynbs/quasi-order-gen.ipynb DELETED
@@ -1,219 +0,0 @@
1
- {
2
- "cells": [
3
- {
4
- "cell_type": "markdown",
5
- "metadata": {
6
- "id": "cw9gSDCONN4s"
7
- },
8
- "source": [
9
- "# Testing the quasi-order generation on the PISA dataset, comparing to the KST library by Milan Segedinac"
10
- ]
11
- },
12
- {
13
- "cell_type": "markdown",
14
- "metadata": {
15
- "id": "gH1gF08aNy22"
16
- },
17
- "source": [
18
- "1. Importing both libraries and requirements"
19
- ]
20
- },
21
- {
22
- "cell_type": "code",
23
- "execution_count": null,
24
- "metadata": {
25
- "colab": {
26
- "base_uri": "https://localhost:8080/"
27
- },
28
- "id": "bvA-pXFUN36a",
29
- "outputId": "fefbb9ca-5eb1-41ec-da36-fc31f7de1093"
30
- },
31
- "outputs": [
32
- {
33
- "name": "stdout",
34
- "output_type": "stream",
35
- "text": [
36
- "fatal: destination path 'iita_python' already exists and is not an empty directory.\n",
37
- "fatal: destination path 'kst' already exists and is not an empty directory.\n",
38
- "Requirement already satisfied: numpy in /usr/local/lib/python3.12/dist-packages (2.0.2)\n",
39
- "Requirement already satisfied: pandas in /usr/local/lib/python3.12/dist-packages (2.2.2)\n",
40
- "Requirement already satisfied: numpy>=1.26.0 in /usr/local/lib/python3.12/dist-packages (from pandas) (2.0.2)\n",
41
- "Requirement already satisfied: python-dateutil>=2.8.2 in /usr/local/lib/python3.12/dist-packages (from pandas) (2.9.0.post0)\n",
42
- "Requirement already satisfied: pytz>=2020.1 in /usr/local/lib/python3.12/dist-packages (from pandas) (2025.2)\n",
43
- "Requirement already satisfied: tzdata>=2022.7 in /usr/local/lib/python3.12/dist-packages (from pandas) (2025.2)\n",
44
- "Requirement already satisfied: six>=1.5 in /usr/local/lib/python3.12/dist-packages (from python-dateutil>=2.8.2->pandas) (1.17.0)\n"
45
- ]
46
- }
47
- ],
48
- "source": [
49
- "!git clone https://github.com/Alexe1900/iita_python.git\n",
50
- "!git clone https://github.com/milansegedinac/kst.git\n",
51
- "!pip install numpy\n",
52
- "!pip install pandas\n",
53
- "import sys\n",
54
- "sys.path.append(\"/content/iita_python\")\n",
55
- "sys.path.append(\"/content/kst\")\n",
56
- "import numpy as np\n",
57
- "import pandas as pd\n",
58
- "import iita_python as iita\n",
59
- "import learning_spaces.kst as kst"
60
- ]
61
- },
62
- {
63
- "cell_type": "markdown",
64
- "metadata": {
65
- "id": "CwlVMK3MO3QJ"
66
- },
67
- "source": [
68
- "2. Importing the dataset"
69
- ]
70
- },
71
- {
72
- "cell_type": "code",
73
- "execution_count": 3,
74
- "metadata": {
75
- "colab": {
76
- "base_uri": "https://localhost:8080/"
77
- },
78
- "id": "FvSAv-4cOWQp",
79
- "outputId": "4d1adf29-3d0c-40cf-d79d-9a8df3d9f945"
80
- },
81
- "outputs": [
82
- {
83
- "name": "stdout",
84
- "output_type": "stream",
85
- "text": [
86
- "Data imported successfully ✅\n"
87
- ]
88
- }
89
- ],
90
- "source": [
91
- "from iita_python.utils import read_rp\n",
92
- "\n",
93
- "data_raw = read_rp(\"iita_python/test_ipynbs/pisa.csv\")\n",
94
- "assert not data_raw.empty\n",
95
- "print(\"Data imported successfully ✅\")"
96
- ]
97
- },
98
- {
99
- "cell_type": "markdown",
100
- "metadata": {
101
- "id": "UVRNzocZTCZC"
102
- },
103
- "source": [
104
- "3. Counting the counterexamples"
105
- ]
106
- },
107
- {
108
- "cell_type": "code",
109
- "execution_count": 6,
110
- "metadata": {
111
- "colab": {
112
- "base_uri": "https://localhost:8080/"
113
- },
114
- "id": "lWysv1UsTGPf",
115
- "outputId": "d24fc04a-e60d-45c6-ce95-c77f859df45e"
116
- },
117
- "outputs": [
118
- {
119
- "name": "stdout",
120
- "output_type": "stream",
121
- "text": [
122
- "Counterexamples computed correctly ✅\n"
123
- ]
124
- }
125
- ],
126
- "source": [
127
- "data = iita.Dataset(data_raw)\n",
128
- "\n",
129
- "correct_ce = kst.ob_counter(data_raw)\n",
130
- "\n",
131
- "try:\n",
132
- " assert (correct_ce == data.counterexamples.to_numpy()).all()\n",
133
- " print(\"Counterexamples computed correctly ✅\")\n",
134
- "except AssertionError:\n",
135
- " print(\"Counterexamples computed incorrectly ❌\")\n"
136
- ]
137
- },
138
- {
139
- "cell_type": "markdown",
140
- "metadata": {
141
- "id": "H7X3tEf7bGdt"
142
- },
143
- "source": [
144
- "4. Generating the quasi-orders"
145
- ]
146
- },
147
- {
148
- "cell_type": "code",
149
- "execution_count": null,
150
- "metadata": {
151
- "colab": {
152
- "base_uri": "https://localhost:8080/"
153
- },
154
- "id": "Ywvri9o8bGA0",
155
- "outputId": "438b2adf-3bb1-4784-cab7-ff32228d5eab"
156
- },
157
- "outputs": [
158
- {
159
- "name": "stdout",
160
- "output_type": "stream",
161
- "text": [
162
- "Correct number of quasi-orders ✅\n",
163
- "Quasi-order 0/13 correct ✅\n",
164
- "Quasi-order 1/13 correct ✅\n",
165
- "Quasi-order 2/13 correct ✅\n",
166
- "Quasi-order 3/13 correct ✅\n",
167
- "Quasi-order 4/13 correct ✅\n",
168
- "Quasi-order 5/13 correct ✅\n",
169
- "Quasi-order 6/13 correct ✅\n",
170
- "Quasi-order 7/13 correct ✅\n",
171
- "Quasi-order 8/13 correct ✅\n",
172
- "Quasi-order 9/13 correct ✅\n",
173
- "Quasi-order 10/13 correct ✅\n",
174
- "Quasi-order 11/13 correct ✅\n",
175
- "Quasi-order 12/13 correct ✅\n"
176
- ]
177
- }
178
- ],
179
- "source": [
180
- "correct_qos = kst.ind_gen(correct_ce)\n",
181
- "\n",
182
- "unfolded_ce = iita.unfold_examples(data.counterexamples)\n",
183
- "test_qos = iita.ind_gen(unfolded_ce, data.items)\n",
184
- "test_qos = [sorted([(int(a), int(b)) for a, b in qo.get_edge_list()]) for qo in test_qos]\n",
185
- "\n",
186
- "try:\n",
187
- " assert len(correct_qos) == len(test_qos)\n",
188
- " print(f'Correct number of quasi-orders ✅')\n",
189
- "except AssertionError:\n",
190
- " print(f'Wrong number of quasi-orders ❌')\n",
191
- " quit()\n",
192
- "\n",
193
- "for i, (corr_qo, test_qo) in enumerate(zip(correct_qos, test_qos)):\n",
194
- " corr_qo = sorted(corr_qo)\n",
195
- " try:\n",
196
- " assert corr_qo == test_qo\n",
197
- " print(f'Quasi-order {i}/{len(correct_qos)} correct ✅')\n",
198
- " except AssertionError:\n",
199
- " print(f'Quasi-order {i}/{len(correct_qos)} incorrect ❌')\n",
200
- " print(f'Test: {test_qo}')\n",
201
- " print(f'Correct: {corr_qo}')"
202
- ]
203
- }
204
- ],
205
- "metadata": {
206
- "colab": {
207
- "provenance": []
208
- },
209
- "kernelspec": {
210
- "display_name": "Python 3",
211
- "name": "python3"
212
- },
213
- "language_info": {
214
- "name": "python"
215
- }
216
- },
217
- "nbformat": 4,
218
- "nbformat_minor": 0
219
- }
iita_python-1.0.2/test_ipynbs/sim_missing_data.ipynb DELETED
@@ -1,176 +0,0 @@
1
- {
2
- "cells": [
3
- {
4
- "cell_type": "markdown",
5
- "id": "c534cd3f",
6
- "metadata": {
7
- "id": "c534cd3f"
8
- },
9
- "source": [
10
- "# Testing on PISA dataset with randomized missing data"
11
- ]
12
- },
13
- {
14
- "cell_type": "markdown",
15
- "source": [
16
- "1. Importing package and dataset"
17
- ],
18
- "metadata": {
19
- "id": "1nLTjppYSRTe"
20
- },
21
- "id": "1nLTjppYSRTe"
22
- },
23
- {
24
- "cell_type": "code",
25
- "source": [
26
- "!pip install iita_python\n",
27
- "!git clone https://gist.github.com/717f0147675b0c8ed25e50d583c943bf.git\n",
28
- "\n",
29
- "import numpy as np\n",
30
- "import iita_python as iita\n",
31
- "import iita_python.fit_metrics as iita_fm\n",
32
- "from iita_python.utils import read_rp\n",
33
- "from random import randint\n",
34
- "\n",
35
- "data = read_rp('./717f0147675b0c8ed25e50d583c943bf/pisa.csv')"
36
- ],
37
- "metadata": {
38
- "id": "SlEiX6B1SSsU",
39
- "outputId": "55bf001f-aba5-493c-a3a6-77da399684c0",
40
- "colab": {
41
- "base_uri": "https://localhost:8080/"
42
- }
43
- },
44
- "id": "SlEiX6B1SSsU",
45
- "execution_count": 8,
46
- "outputs": [
47
- {
48
- "output_type": "stream",
49
- "name": "stdout",
50
- "text": [
51
- "Requirement already satisfied: iita_python in /usr/local/lib/python3.12/dist-packages (0.0.post42)\n",
52
- "Requirement already satisfied: numpy in /usr/local/lib/python3.12/dist-packages (from iita_python) (2.0.2)\n",
53
- "Requirement already satisfied: pandas in /usr/local/lib/python3.12/dist-packages (from iita_python) (2.2.2)\n",
54
- "Requirement already satisfied: python-dateutil>=2.8.2 in /usr/local/lib/python3.12/dist-packages (from pandas->iita_python) (2.9.0.post0)\n",
55
- "Requirement already satisfied: pytz>=2020.1 in /usr/local/lib/python3.12/dist-packages (from pandas->iita_python) (2025.2)\n",
56
- "Requirement already satisfied: tzdata>=2022.7 in /usr/local/lib/python3.12/dist-packages (from pandas->iita_python) (2025.2)\n",
57
- "Requirement already satisfied: six>=1.5 in /usr/local/lib/python3.12/dist-packages (from python-dateutil>=2.8.2->pandas->iita_python) (1.17.0)\n",
58
- "fatal: destination path '717f0147675b0c8ed25e50d583c943bf' already exists and is not an empty directory.\n"
59
- ]
60
- }
61
- ]
62
- },
63
- {
64
- "cell_type": "markdown",
65
- "source": [
66
- "2. Testing function"
67
- ],
68
- "metadata": {
69
- "id": "jlvoh1yOata0"
70
- },
71
- "id": "jlvoh1yOata0"
72
- },
73
- {
74
- "cell_type": "code",
75
- "source": [
76
- "def test(metric):\n",
77
- " correct = True\n",
78
- " correct_qo = None\n",
79
- " correct_count = 0\n",
80
- "\n",
81
- " while (correct and correct_count < data.shape[0]*data.shape[1]):\n",
82
- " print(f'doing {correct_count}')\n",
83
- " test_dataset = iita.Dataset(data)\n",
84
- " unfolded_ce = iita.unfold_examples(test_dataset.ce)\n",
85
- " qos = iita.ind_gen(unfolded_ce, test_dataset.items)\n",
86
- "\n",
87
- " best_qo_id = -1\n",
88
- " best_qo_diff = float('inf')\n",
89
- " for i, qo in enumerate(qos):\n",
90
- " qo_diff = metric(test_dataset, qo)\n",
91
- " if (qo_diff < best_qo_diff):\n",
92
- " best_qo_diff = qo_diff\n",
93
- " best_qo_id = i\n",
94
- "\n",
95
- " best_qo = sorted([(int(a), int(b)) for a, b in qos[best_qo_id].get_edge_list()])\n",
96
- " if (correct_qo is None):\n",
97
- " correct_count += 1\n",
98
- " correct_qo = best_qo\n",
99
- " elif (best_qo != correct_qo):\n",
100
- " correct = False\n",
101
- " else:\n",
102
- " correct_count += 1\n",
103
- "\n",
104
- " while (True):\n",
105
- " a = randint(0, test_dataset.items - 1)\n",
106
- " b = randint(0, test_dataset.subjects - 1)\n",
107
- " if (not np.isnan(data[a][b])):\n",
108
- " break;\n",
109
- " data.loc[b, a] = np.nan\n",
110
- "\n",
111
- " return correct_count"
112
- ],
113
- "metadata": {
114
- "id": "ok9yLOnsTOU7"
115
- },
116
- "id": "ok9yLOnsTOU7",
117
- "execution_count": 21,
118
- "outputs": []
119
- },
120
- {
121
- "cell_type": "code",
122
- "source": [
123
- "res = test(iita_fm.orig_iita_fit)"
124
- ],
125
- "metadata": {
126
- "id": "giLvbXdtX4uc"
127
- },
128
- "id": "giLvbXdtX4uc",
129
- "execution_count": null,
130
- "outputs": []
131
- },
132
- {
133
- "cell_type": "code",
134
- "source": [
135
- "res"
136
- ],
137
- "metadata": {
138
- "id": "N2K347pebF9u",
139
- "outputId": "b603f637-7b16-4161-eb18-4cf5ea12d989",
140
- "colab": {
141
- "base_uri": "https://localhost:8080/"
142
- }
143
- },
144
- "id": "N2K347pebF9u",
145
- "execution_count": 23,
146
- "outputs": [
147
- {
148
- "output_type": "execute_result",
149
- "data": {
150
- "text/plain": [
151
- "525"
152
- ]
153
- },
154
- "metadata": {},
155
- "execution_count": 23
156
- }
157
- ]
158
- }
159
- ],
160
- "metadata": {
161
- "kernelspec": {
162
- "display_name": "iita",
163
- "language": "python",
164
- "name": "python3"
165
- },
166
- "language_info": {
167
- "name": "python",
168
- "version": "3.12.11"
169
- },
170
- "colab": {
171
- "provenance": []
172
- }
173
- },
174
- "nbformat": 4,
175
- "nbformat_minor": 5
176
- }
{iita_python-1.0.2 → iita_python-1.2}/.gitignore RENAMED
File without changes
{iita_python-1.0.2 → iita_python-1.2}/pyproject.toml RENAMED
File without changes
{iita_python-1.0.2 → iita_python-1.2}/setuf.cfg RENAMED
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{iita_python-1.0.2 → iita_python-1.2}/setup.cfg RENAMED
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{iita_python-1.0.2 → iita_python-1.2}/setup.py RENAMED
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