iints-sdk-python35 1.5.4__tar.gz → 1.5.6__tar.gz

{iints_sdk_python35-1.5.4 → iints_sdk_python35-1.5.6}/LICENSE

@@ -164,8 +164,8 @@ the Work or Derivative Works thereof, You may choose to offer,
 and charge a fee for, acceptance of support, warranty, indemnity,
 or other liability obligations and/or rights consistent with this
 License. However, in accepting such obligations, You may act only
-on Your own behalf and on Your sole responsibility, not on behalf
-of any other Contributor, and only if You agree to indemnify,
+on Your own behalf and on Your sole responsibility, not on behalf of
+any other Contributor, and only if You agree to indemnify,
 defend, and hold each Contributor harmless for any liability
 incurred by, or claims asserted against, such Contributor by reason
 of your accepting any such warranty or additional liability.

iints_sdk_python35-1.5.6/PKG-INFO

@@ -0,0 +1,131 @@
+Metadata-Version: 2.4
+Name: iints-sdk-python35
+Version: 1.5.6
+Summary: A pre-clinical Edge-AI SDK for diabetes management validation.
+Author-email: Rune Bobbaers <rune.bobbaers@gmail.com>
+License-Expression: Apache-2.0
+Project-URL: Homepage, https://github.com/python35/IINTS-SDK
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
+Classifier: Operating System :: OS Independent
+Classifier: Development Status :: 5 - Production/Stable
+Requires-Python: <3.15,>=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+License-File: NOTICE
+License-File: LICENSE-MIT-IINTS-LEGACY
+Requires-Dist: fastapi<1.0.0,>=0.115.0
+Requires-Dist: numpy<3.0.0,>=1.24.0
+Requires-Dist: pandas<3.0.0,>=2.0.0
+Requires-Dist: pydantic<3.0.0,>=2.0.0
+Requires-Dist: PyYAML<7.0.0,>=6.0.0
+Requires-Dist: rich<16.0.0,>=12.0.0
+Requires-Dist: scipy<2.0.0,>=1.9.0
+Requires-Dist: typer[all]<1.0.0,>=0.9.0
+Requires-Dist: uvicorn<1.0.0,>=0.30.0
+Provides-Extra: edge
+Requires-Dist: pyserial<4.0,>=3.5; extra == "edge"
+Provides-Extra: reports
+Requires-Dist: fpdf2<3.0.0,>=2.8.0; extra == "reports"
+Requires-Dist: matplotlib<4.0.0,>=3.5.0; extra == "reports"
+Requires-Dist: openpyxl<4.0.0,>=3.0.0; extra == "reports"
+Requires-Dist: pillow<13.0.0,>=12.1.1; extra == "reports"
+Requires-Dist: seaborn<1.0.0,>=0.11.0; extra == "reports"
+Provides-Extra: full
+Requires-Dist: fpdf2<3.0.0,>=2.8.0; extra == "full"
+Requires-Dist: matplotlib<4.0.0,>=3.5.0; extra == "full"
+Requires-Dist: openpyxl<4.0.0,>=3.0.0; extra == "full"
+Requires-Dist: pyserial<4.0,>=3.5; extra == "full"
+Requires-Dist: pillow<13.0.0,>=12.1.1; extra == "full"
+Requires-Dist: seaborn<1.0.0,>=0.11.0; extra == "full"
+Provides-Extra: dev
+Requires-Dist: pytest<10.0.0,>=7.0.0; extra == "dev"
+Requires-Dist: hypothesis<7.0.0,>=6.0.0; extra == "dev"
+Requires-Dist: flake8<8.0.0,>=7.0.0; extra == "dev"
+Requires-Dist: httpx<1.0.0,>=0.27.0; extra == "dev"
+Requires-Dist: mypy<3.0.0,>=1.8.0; extra == "dev"
+Requires-Dist: pandas-stubs<3.0.0,>=2.0.0; extra == "dev"
+Requires-Dist: types-PyYAML<7.0.0,>=6.0.0; extra == "dev"
+Requires-Dist: types-psutil<8.0.0,>=7.0.0; extra == "dev"
+Provides-Extra: torch
+Requires-Dist: torch<3.0.0,>=1.9.0; extra == "torch"
+Provides-Extra: nightscout
+Requires-Dist: py-nightscout; extra == "nightscout"
+Provides-Extra: research
+Requires-Dist: torch<3.0.0,>=2.0.0; extra == "research"
+Requires-Dist: pyarrow<25.0.0,>=12.0.0; extra == "research"
+Requires-Dist: h5py<4.0.0,>=3.10.0; extra == "research"
+Requires-Dist: onnx<2.0.0,>=1.16.0; extra == "research"
+Requires-Dist: onnxscript<1.0.0,>=0.1.0; extra == "research"
+Provides-Extra: mdmp
+Requires-Dist: cryptography<49.0.0,>=42.0.0; extra == "mdmp"
+Dynamic: license-file
+
+# IINTS-AF SDK
+
+[![EUCYS 2026](https://img.shields.io/badge/EUCYS-2026%20Selected-gold?style=flat)](https://www.uni-kiel.de/en/eucys2026)
+[![PyPI version](https://badge.fury.io/py/iints-sdk-python35.svg)](https://badge.fury.io/py/iints-sdk-python35)
+[![CI](https://github.com/python35/IINTS-SDK/actions/workflows/python-package.yml/badge.svg)](https://github.com/python35/IINTS-SDK/actions/workflows/python-package.yml)
+[![Docs](https://img.shields.io/badge/docs-IINTS--AF-0a66c2?style=flat)](https://python35.github.io/IINTS-SDK/)
+
+> "Code shouldn't be a secret when it's managing a life."
+
+Open-source research platform for insulin delivery algorithm simulation and validation.
+
+---
+
+## What It Does
+
+- **Simulate** virtual patients across thousands of scenarios before any algorithm reaches a real device
+- **Certify** datasets cryptographically — traceable, consented, reproducible
+- **Understand** results with audit-ready reports and local AI explanation via Ministral
+
+---
+
+## Install
+
+```bash
+pip install "iints-sdk-python35[full,mdmp]"
+iints doctor --smoke-run
+```
+
+**Raspberry Pi / Arduino UNO Q:**
+```bash
+pip install "iints-sdk-python35[edge,mdmp]"
+iints edge quickstart --board raspberry_pi
+iints edge quickstart --board uno_q
+```
+
+---
+
+## Quick Start
+
+```bash
+iints quickstart --project-name my_study
+cd my_study
+iints presets run --name baseline_t1d --algo algorithms/example_algorithm.py
+iints ai report results/<run_id>
+```
+
+Full documentation: [python35.github.io/IINTS-SDK](https://python35.github.io/IINTS-SDK/)
+
+---
+
+## Live Demo
+
+For a Zoom call, jury walkthrough, or sponsor demo where you want to show both the code and the generated outputs in one terminal flow:
+
+```bash
+iints demo-live --output-dir results/live_demo
+```
+
+That exports the showable demo script, prints the key SDK calls, runs the demo, and lists the poster plus proof artifacts to open next.
+
+---
+
+> Research software. Not a medical device. MIT Licensed.  
+> *Built by a 17-year-old with type 1 diabetes.*

iints_sdk_python35-1.5.6/README.md

@@ -0,0 +1,64 @@
+# IINTS-AF SDK
+
+[![EUCYS 2026](https://img.shields.io/badge/EUCYS-2026%20Selected-gold?style=flat)](https://www.uni-kiel.de/en/eucys2026)
+[![PyPI version](https://badge.fury.io/py/iints-sdk-python35.svg)](https://badge.fury.io/py/iints-sdk-python35)
+[![CI](https://github.com/python35/IINTS-SDK/actions/workflows/python-package.yml/badge.svg)](https://github.com/python35/IINTS-SDK/actions/workflows/python-package.yml)
+[![Docs](https://img.shields.io/badge/docs-IINTS--AF-0a66c2?style=flat)](https://python35.github.io/IINTS-SDK/)
+
+> "Code shouldn't be a secret when it's managing a life."
+
+Open-source research platform for insulin delivery algorithm simulation and validation.
+
+---
+
+## What It Does
+
+- **Simulate** virtual patients across thousands of scenarios before any algorithm reaches a real device
+- **Certify** datasets cryptographically — traceable, consented, reproducible
+- **Understand** results with audit-ready reports and local AI explanation via Ministral
+
+---
+
+## Install
+
+```bash
+pip install "iints-sdk-python35[full,mdmp]"
+iints doctor --smoke-run
+```
+
+**Raspberry Pi / Arduino UNO Q:**
+```bash
+pip install "iints-sdk-python35[edge,mdmp]"
+iints edge quickstart --board raspberry_pi
+iints edge quickstart --board uno_q
+```
+
+---
+
+## Quick Start
+
+```bash
+iints quickstart --project-name my_study
+cd my_study
+iints presets run --name baseline_t1d --algo algorithms/example_algorithm.py
+iints ai report results/<run_id>
+```
+
+Full documentation: [python35.github.io/IINTS-SDK](https://python35.github.io/IINTS-SDK/)
+
+---
+
+## Live Demo
+
+For a Zoom call, jury walkthrough, or sponsor demo where you want to show both the code and the generated outputs in one terminal flow:
+
+```bash
+iints demo-live --output-dir results/live_demo
+```
+
+That exports the showable demo script, prints the key SDK calls, runs the demo, and lists the poster plus proof artifacts to open next.
+
+---
+
+> Research software. Not a medical device. MIT Licensed.  
+> *Built by a 17-year-old with type 1 diabetes.*

{iints_sdk_python35-1.5.4 → iints_sdk_python35-1.5.6}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "iints-sdk-python35" 
-version = "1.5.4"
+version = "1.5.6"
 authors = [
   { name="Rune Bobbaers", email="rune.bobbaers@gmail.com" },
 ]
@@ -12,72 +12,73 @@ description = "A pre-clinical Edge-AI SDK for diabetes management validation."
 readme = "README.md"
 license = "Apache-2.0"
 license-files = ["LICENSE", "NOTICE", "LICENSE-MIT-IINTS-LEGACY"]
-requires-python = ">=3.10"
+requires-python = ">=3.10,<3.15"
 classifiers = [
     "Programming Language :: Python :: 3",
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
     "Programming Language :: Python :: 3.13",
+    "Programming Language :: Python :: 3.14",
     "Operating System :: OS Independent",
     "Development Status :: 5 - Production/Stable",
 ]
 dependencies = [
-    "fastapi>=0.115.0",
-    "numpy>=1.24.0",
-    "pandas>=2.0.0",
-    "pydantic>=2.0.0",
-    "PyYAML",
-    "rich>=12.0.0",
-    "scipy>=1.9.0",
-    "typer[all]",
-    "uvicorn>=0.30.0",
+    "fastapi>=0.115.0,<1.0.0",
+    "numpy>=1.24.0,<3.0.0",
+    "pandas>=2.0.0,<3.0.0",
+    "pydantic>=2.0.0,<3.0.0",
+    "PyYAML>=6.0.0,<7.0.0",
+    "rich>=12.0.0,<16.0.0",
+    "scipy>=1.9.0,<2.0.0",
+    "typer[all]>=0.9.0,<1.0.0",
+    "uvicorn>=0.30.0,<1.0.0",
 ]
 
 [project.optional-dependencies]
 edge = [
-  "pyserial>=3.5",
+  "pyserial>=3.5,<4.0",
 ]
 reports = [
-  "fpdf2>=2.8.0",
-  "matplotlib>=3.5.0",
-  "openpyxl>=3.0.0",
-  "pillow>=12.1.1",
-  "seaborn>=0.11.0",
+  "fpdf2>=2.8.0,<3.0.0",
+  "matplotlib>=3.5.0,<4.0.0",
+  "openpyxl>=3.0.0,<4.0.0",
+  "pillow>=12.1.1,<13.0.0",
+  "seaborn>=0.11.0,<1.0.0",
 ]
 full = [
-  "fpdf2>=2.8.0",
-  "matplotlib>=3.5.0",
-  "openpyxl>=3.0.0",
-  "pyserial>=3.5",
-  "pillow>=12.1.1",
-  "seaborn>=0.11.0",
+  "fpdf2>=2.8.0,<3.0.0",
+  "matplotlib>=3.5.0,<4.0.0",
+  "openpyxl>=3.0.0,<4.0.0",
+  "pyserial>=3.5,<4.0",
+  "pillow>=12.1.1,<13.0.0",
+  "seaborn>=0.11.0,<1.0.0",
 ]
 dev = [
-  "pytest>=7.0.0",
-  "hypothesis>=6.0.0",
-  "flake8",
-  "httpx>=0.27.0",
-  "mypy",
-  "pandas-stubs",
-  "types-PyYAML",
-  "types-psutil",
+  "pytest>=7.0.0,<10.0.0",
+  "hypothesis>=6.0.0,<7.0.0",
+  "flake8>=7.0.0,<8.0.0",
+  "httpx>=0.27.0,<1.0.0",
+  "mypy>=1.8.0,<3.0.0",
+  "pandas-stubs>=2.0.0,<3.0.0",
+  "types-PyYAML>=6.0.0,<7.0.0",
+  "types-psutil>=7.0.0,<8.0.0",
 ]
 torch = [
-  "torch>=1.9.0",
+  "torch>=1.9.0,<3.0.0",
 ]
 nightscout = [
   "py-nightscout",
 ]
 research = [
-  "torch>=2.0.0",
-  "pyarrow>=12.0.0",
-  "h5py>=3.10.0",
-  "onnx>=1.16.0",
-  "onnxscript>=0.1.0",
+  "torch>=2.0.0,<3.0.0",
+  "pyarrow>=12.0.0,<25.0.0",
+  "h5py>=3.10.0,<4.0.0",
+  "onnx>=1.16.0,<2.0.0",
+  "onnxscript>=0.1.0,<1.0.0",
 ]
 mdmp = [
-  "cryptography>=42.0.0",
+  "cryptography>=42.0.0,<49.0.0",
 ]
 
 [project.scripts]
@@ -87,7 +88,7 @@ iints-sdk-doctor = "iints_sdk_python35_doctor:main"
 [project.entry-points."iints.algorithms"]
 "PID Controller" = "iints.core.algorithms.pid_controller:PIDController"
 "Fixed Basal Bolus" = "iints.core.algorithms.fixed_basal_bolus:FixedBasalBolus"
-"Correction Bolus" = "iints.core.algorithms.correction_bolus:CorrectionBolusAlgorithm"
+"Correction Bolus" = "iints.core.algorithms.correction_bolus:CorrectionBolus"
 "Standard Pump" = "iints.core.algorithms.standard_pump_algo:StandardPumpAlgorithm"
 "Mock Constant Dose" = "iints.core.algorithms.mock_algorithms:ConstantDoseAlgorithm"
 "Mock Random Dose" = "iints.core.algorithms.mock_algorithms:RandomDoseAlgorithm"

{iints_sdk_python35-1.5.4 → iints_sdk_python35-1.5.6}/src/iints/__init__.py

@@ -11,7 +11,7 @@ except ImportError:  # pragma: no cover - Python < 3.8 fallback
 try:
     __version__ = version("iints-sdk-python35")
 except PackageNotFoundError:  # pragma: no cover - source tree fallback
-    __version__ = "1.5.4"
+    __version__ = "1.5.6"
 
 # Note to developers: this SDK is currently maintained by a single author.
 # Please report bugs via GitHub issues and feel free to contribute fixes via PRs.
@@ -47,7 +47,7 @@ except Exception:  # pragma: no cover - fallback if torch/device manager import
         def get_device(self):
             return self._device
 from .core.safety import SafetyConfig, SafetySupervisor
-from .core.devices.models import SensorModel, PumpModel
+from .core.devices.models import SENSOR_PROFILES, SensorModel, PumpModel, create_sensor_model
 from .core.algorithms.standard_pump_algo import StandardPumpAlgorithm
 from .core.algorithms.mock_algorithms import (
     ConstantDoseAlgorithm,
@@ -74,7 +74,7 @@ from .data.importer import (
     summarize_carelink_csv,
 )
 from .data.nightscout import NightscoutConfig, import_nightscout
-from .data.tidepool import TidepoolClient, load_openapi_spec
+from .data.tidepool import TidepoolClient, TidepoolConfig, import_tidepool, load_openapi_spec
 from .data.guardians import mdmp_gate, MDMPGateError
 from .data.synthetic_mirror import generate_synthetic_mirror, SyntheticMirrorArtifact
 from .data.study_corruption import AVAILABLE_STUDY_CORRUPTIONS, apply_study_corruptions, write_corrupted_study_csv
@@ -224,6 +224,8 @@ __all__ = [
     "SafetyConfig",
     "SensorModel",
     "PumpModel",
+    "SENSOR_PROFILES",
+    "create_sensor_model",
     "StandardPumpAlgorithm",
     "ConstantDoseAlgorithm",
     "RandomDoseAlgorithm",
@@ -247,6 +249,8 @@ __all__ = [
     "NightscoutConfig",
     "import_nightscout",
     "TidepoolClient",
+    "TidepoolConfig",
+    "import_tidepool",
     "load_openapi_spec",
     "mdmp_gate",
     "MDMPGateError",

{iints_sdk_python35-1.5.4 → iints_sdk_python35-1.5.6}/src/iints/analysis/baseline.py

@@ -27,6 +27,32 @@ def compute_metrics(results_df: pd.DataFrame) -> Dict[str, float]:
     return metrics.to_dict()
 
 
+def _run_context(
+    *,
+    requested_duration_minutes: int,
+    safety_report: Dict[str, Any],
+) -> Dict[str, Any]:
+    terminated_early = bool(safety_report.get("terminated_early", False))
+    termination = safety_report.get("termination_reason", {})
+    completed_duration_minutes = requested_duration_minutes
+    termination_reason = ""
+    if isinstance(termination, dict):
+        completed_duration_minutes = int(
+            termination.get("current_time_minutes", requested_duration_minutes)
+        )
+        termination_reason = str(termination.get("reason", ""))
+    return {
+        "requested_duration_minutes": int(requested_duration_minutes),
+        "completed_duration_minutes": int(completed_duration_minutes),
+        "completion_ratio_pct": round(
+            (completed_duration_minutes / max(requested_duration_minutes, 1)) * 100.0,
+            2,
+        ),
+        "terminated_early": terminated_early,
+        "termination_reason": termination_reason,
+    }
+
+
 def run_baseline_comparison(
     patient_params: Dict[str, Any],
     stress_event_payloads: List[Dict[str, Any]],
@@ -44,6 +70,10 @@ def run_baseline_comparison(
     rows.append(
         {
             "algorithm": primary_label,
+            **_run_context(
+                requested_duration_minutes=duration,
+                safety_report=primary_safety,
+            ),
             "tir_70_180": primary_metrics.get("tir_70_180", 0.0),
             "tir_below_70": primary_metrics.get("tir_below_70", 0.0),
             "tir_above_180": primary_metrics.get("tir_above_180", 0.0),
@@ -74,6 +104,10 @@ def run_baseline_comparison(
         rows.append(
             {
                 "algorithm": label,
+                **_run_context(
+                    requested_duration_minutes=duration,
+                    safety_report=safety_report,
+                ),
                 "tir_70_180": metrics.get("tir_70_180", 0.0),
                 "tir_below_70": metrics.get("tir_below_70", 0.0),
                 "tir_above_180": metrics.get("tir_above_180", 0.0),