iints-sdk-python35 1.5.3__tar.gz → 1.5.5__tar.gz

{iints_sdk_python35-1.5.3 → iints_sdk_python35-1.5.5}/LICENSE

@@ -164,8 +164,8 @@ the Work or Derivative Works thereof, You may choose to offer,
 and charge a fee for, acceptance of support, warranty, indemnity,
 or other liability obligations and/or rights consistent with this
 License. However, in accepting such obligations, You may act only
-on Your own behalf and on Your sole responsibility, not on behalf
-of any other Contributor, and only if You agree to indemnify,
+on Your own behalf and on Your sole responsibility, not on behalf of
+any other Contributor, and only if You agree to indemnify,
 defend, and hold each Contributor harmless for any liability
 incurred by, or claims asserted against, such Contributor by reason
 of your accepting any such warranty or additional liability.

iints_sdk_python35-1.5.5/PKG-INFO

@@ -0,0 +1,131 @@
+Metadata-Version: 2.4
+Name: iints-sdk-python35
+Version: 1.5.5
+Summary: A pre-clinical Edge-AI SDK for diabetes management validation.
+Author-email: Rune Bobbaers <rune.bobbaers@gmail.com>
+License-Expression: Apache-2.0
+Project-URL: Homepage, https://github.com/python35/IINTS-SDK
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
+Classifier: Operating System :: OS Independent
+Classifier: Development Status :: 5 - Production/Stable
+Requires-Python: <3.15,>=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+License-File: NOTICE
+License-File: LICENSE-MIT-IINTS-LEGACY
+Requires-Dist: fastapi<1.0.0,>=0.115.0
+Requires-Dist: numpy<3.0.0,>=1.24.0
+Requires-Dist: pandas<3.0.0,>=2.0.0
+Requires-Dist: pydantic<3.0.0,>=2.0.0
+Requires-Dist: PyYAML<7.0.0,>=6.0.0
+Requires-Dist: rich<16.0.0,>=12.0.0
+Requires-Dist: scipy<2.0.0,>=1.9.0
+Requires-Dist: typer[all]<1.0.0,>=0.9.0
+Requires-Dist: uvicorn<1.0.0,>=0.30.0
+Provides-Extra: edge
+Requires-Dist: pyserial<4.0,>=3.5; extra == "edge"
+Provides-Extra: reports
+Requires-Dist: fpdf2<3.0.0,>=2.8.0; extra == "reports"
+Requires-Dist: matplotlib<4.0.0,>=3.5.0; extra == "reports"
+Requires-Dist: openpyxl<4.0.0,>=3.0.0; extra == "reports"
+Requires-Dist: pillow<13.0.0,>=12.1.1; extra == "reports"
+Requires-Dist: seaborn<1.0.0,>=0.11.0; extra == "reports"
+Provides-Extra: full
+Requires-Dist: fpdf2<3.0.0,>=2.8.0; extra == "full"
+Requires-Dist: matplotlib<4.0.0,>=3.5.0; extra == "full"
+Requires-Dist: openpyxl<4.0.0,>=3.0.0; extra == "full"
+Requires-Dist: pyserial<4.0,>=3.5; extra == "full"
+Requires-Dist: pillow<13.0.0,>=12.1.1; extra == "full"
+Requires-Dist: seaborn<1.0.0,>=0.11.0; extra == "full"
+Provides-Extra: dev
+Requires-Dist: pytest<10.0.0,>=7.0.0; extra == "dev"
+Requires-Dist: hypothesis<7.0.0,>=6.0.0; extra == "dev"
+Requires-Dist: flake8<8.0.0,>=7.0.0; extra == "dev"
+Requires-Dist: httpx<1.0.0,>=0.27.0; extra == "dev"
+Requires-Dist: mypy<3.0.0,>=1.8.0; extra == "dev"
+Requires-Dist: pandas-stubs<3.0.0,>=2.0.0; extra == "dev"
+Requires-Dist: types-PyYAML<7.0.0,>=6.0.0; extra == "dev"
+Requires-Dist: types-psutil<8.0.0,>=7.0.0; extra == "dev"
+Provides-Extra: torch
+Requires-Dist: torch<3.0.0,>=1.9.0; extra == "torch"
+Provides-Extra: nightscout
+Requires-Dist: py-nightscout; extra == "nightscout"
+Provides-Extra: research
+Requires-Dist: torch<3.0.0,>=2.0.0; extra == "research"
+Requires-Dist: pyarrow<25.0.0,>=12.0.0; extra == "research"
+Requires-Dist: h5py<4.0.0,>=3.10.0; extra == "research"
+Requires-Dist: onnx<2.0.0,>=1.16.0; extra == "research"
+Requires-Dist: onnxscript<1.0.0,>=0.1.0; extra == "research"
+Provides-Extra: mdmp
+Requires-Dist: cryptography<49.0.0,>=42.0.0; extra == "mdmp"
+Dynamic: license-file
+
+# IINTS-AF SDK
+
+[![EUCYS 2026](https://img.shields.io/badge/EUCYS-2026%20Selected-gold?style=flat)](https://www.uni-kiel.de/en/eucys2026)
+[![PyPI version](https://badge.fury.io/py/iints-sdk-python35.svg)](https://badge.fury.io/py/iints-sdk-python35)
+[![CI](https://github.com/python35/IINTS-SDK/actions/workflows/python-package.yml/badge.svg)](https://github.com/python35/IINTS-SDK/actions/workflows/python-package.yml)
+[![Docs](https://img.shields.io/badge/docs-IINTS--AF-0a66c2?style=flat)](https://python35.github.io/IINTS-SDK/)
+
+> "Code shouldn't be a secret when it's managing a life."
+
+Open-source research platform for insulin delivery algorithm simulation and validation.
+
+---
+
+## What It Does
+
+- **Simulate** virtual patients across thousands of scenarios before any algorithm reaches a real device
+- **Certify** datasets cryptographically — traceable, consented, reproducible
+- **Understand** results with audit-ready reports and local AI explanation via Ministral
+
+---
+
+## Install
+
+```bash
+pip install "iints-sdk-python35[full,mdmp]"
+iints doctor --smoke-run
+```
+
+**Raspberry Pi / Arduino UNO Q:**
+```bash
+pip install "iints-sdk-python35[edge,mdmp]"
+iints edge quickstart --board raspberry_pi
+iints edge quickstart --board uno_q
+```
+
+---
+
+## Quick Start
+
+```bash
+iints quickstart --project-name my_study
+cd my_study
+iints presets run --name baseline_t1d --algo algorithms/example_algorithm.py
+iints ai report results/<run_id>
+```
+
+Full documentation: [python35.github.io/IINTS-SDK](https://python35.github.io/IINTS-SDK/)
+
+---
+
+## Live Demo
+
+For a Zoom call, jury walkthrough, or sponsor demo where you want to show both the code and the generated outputs in one terminal flow:
+
+```bash
+iints demo-live --output-dir results/live_demo
+```
+
+That exports the showable demo script, prints the key SDK calls, runs the demo, and lists the poster plus proof artifacts to open next.
+
+---
+
+> Research software. Not a medical device. MIT Licensed.  
+> *Built by a 17-year-old with type 1 diabetes.*

iints_sdk_python35-1.5.5/README.md

@@ -0,0 +1,64 @@
+# IINTS-AF SDK
+
+[![EUCYS 2026](https://img.shields.io/badge/EUCYS-2026%20Selected-gold?style=flat)](https://www.uni-kiel.de/en/eucys2026)
+[![PyPI version](https://badge.fury.io/py/iints-sdk-python35.svg)](https://badge.fury.io/py/iints-sdk-python35)
+[![CI](https://github.com/python35/IINTS-SDK/actions/workflows/python-package.yml/badge.svg)](https://github.com/python35/IINTS-SDK/actions/workflows/python-package.yml)
+[![Docs](https://img.shields.io/badge/docs-IINTS--AF-0a66c2?style=flat)](https://python35.github.io/IINTS-SDK/)
+
+> "Code shouldn't be a secret when it's managing a life."
+
+Open-source research platform for insulin delivery algorithm simulation and validation.
+
+---
+
+## What It Does
+
+- **Simulate** virtual patients across thousands of scenarios before any algorithm reaches a real device
+- **Certify** datasets cryptographically — traceable, consented, reproducible
+- **Understand** results with audit-ready reports and local AI explanation via Ministral
+
+---
+
+## Install
+
+```bash
+pip install "iints-sdk-python35[full,mdmp]"
+iints doctor --smoke-run
+```
+
+**Raspberry Pi / Arduino UNO Q:**
+```bash
+pip install "iints-sdk-python35[edge,mdmp]"
+iints edge quickstart --board raspberry_pi
+iints edge quickstart --board uno_q
+```
+
+---
+
+## Quick Start
+
+```bash
+iints quickstart --project-name my_study
+cd my_study
+iints presets run --name baseline_t1d --algo algorithms/example_algorithm.py
+iints ai report results/<run_id>
+```
+
+Full documentation: [python35.github.io/IINTS-SDK](https://python35.github.io/IINTS-SDK/)
+
+---
+
+## Live Demo
+
+For a Zoom call, jury walkthrough, or sponsor demo where you want to show both the code and the generated outputs in one terminal flow:
+
+```bash
+iints demo-live --output-dir results/live_demo
+```
+
+That exports the showable demo script, prints the key SDK calls, runs the demo, and lists the poster plus proof artifacts to open next.
+
+---
+
+> Research software. Not a medical device. MIT Licensed.  
+> *Built by a 17-year-old with type 1 diabetes.*

{iints_sdk_python35-1.5.3 → iints_sdk_python35-1.5.5}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "iints-sdk-python35" 
-version = "1.5.3"
+version = "1.5.5"
 authors = [
   { name="Rune Bobbaers", email="rune.bobbaers@gmail.com" },
 ]
@@ -12,72 +12,73 @@ description = "A pre-clinical Edge-AI SDK for diabetes management validation."
 readme = "README.md"
 license = "Apache-2.0"
 license-files = ["LICENSE", "NOTICE", "LICENSE-MIT-IINTS-LEGACY"]
-requires-python = ">=3.10"
+requires-python = ">=3.10,<3.15"
 classifiers = [
     "Programming Language :: Python :: 3",
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
     "Programming Language :: Python :: 3.13",
+    "Programming Language :: Python :: 3.14",
     "Operating System :: OS Independent",
     "Development Status :: 5 - Production/Stable",
 ]
 dependencies = [
-    "fastapi>=0.115.0",
-    "numpy>=1.24.0",
-    "pandas>=2.0.0",
-    "pydantic>=2.0.0",
-    "PyYAML",
-    "rich>=12.0.0",
-    "scipy>=1.9.0",
-    "typer[all]",
-    "uvicorn>=0.30.0",
+    "fastapi>=0.115.0,<1.0.0",
+    "numpy>=1.24.0,<3.0.0",
+    "pandas>=2.0.0,<3.0.0",
+    "pydantic>=2.0.0,<3.0.0",
+    "PyYAML>=6.0.0,<7.0.0",
+    "rich>=12.0.0,<16.0.0",
+    "scipy>=1.9.0,<2.0.0",
+    "typer[all]>=0.9.0,<1.0.0",
+    "uvicorn>=0.30.0,<1.0.0",
 ]
 
 [project.optional-dependencies]
 edge = [
-  "pyserial>=3.5",
+  "pyserial>=3.5,<4.0",
 ]
 reports = [
-  "fpdf2>=2.8.0",
-  "matplotlib>=3.5.0",
-  "openpyxl>=3.0.0",
-  "pillow>=12.1.1",
-  "seaborn>=0.11.0",
+  "fpdf2>=2.8.0,<3.0.0",
+  "matplotlib>=3.5.0,<4.0.0",
+  "openpyxl>=3.0.0,<4.0.0",
+  "pillow>=12.1.1,<13.0.0",
+  "seaborn>=0.11.0,<1.0.0",
 ]
 full = [
-  "fpdf2>=2.8.0",
-  "matplotlib>=3.5.0",
-  "openpyxl>=3.0.0",
-  "pyserial>=3.5",
-  "pillow>=12.1.1",
-  "seaborn>=0.11.0",
+  "fpdf2>=2.8.0,<3.0.0",
+  "matplotlib>=3.5.0,<4.0.0",
+  "openpyxl>=3.0.0,<4.0.0",
+  "pyserial>=3.5,<4.0",
+  "pillow>=12.1.1,<13.0.0",
+  "seaborn>=0.11.0,<1.0.0",
 ]
 dev = [
-  "pytest>=7.0.0",
-  "hypothesis>=6.0.0",
-  "flake8",
-  "httpx>=0.27.0",
-  "mypy",
-  "pandas-stubs",
-  "types-PyYAML",
-  "types-psutil",
+  "pytest>=7.0.0,<10.0.0",
+  "hypothesis>=6.0.0,<7.0.0",
+  "flake8>=7.0.0,<8.0.0",
+  "httpx>=0.27.0,<1.0.0",
+  "mypy>=1.8.0,<3.0.0",
+  "pandas-stubs>=2.0.0,<3.0.0",
+  "types-PyYAML>=6.0.0,<7.0.0",
+  "types-psutil>=7.0.0,<8.0.0",
 ]
 torch = [
-  "torch>=1.9.0",
+  "torch>=1.9.0,<3.0.0",
 ]
 nightscout = [
   "py-nightscout",
 ]
 research = [
-  "torch>=2.0.0",
-  "pyarrow>=12.0.0",
-  "h5py>=3.10.0",
-  "onnx>=1.16.0",
-  "onnxscript>=0.1.0",
+  "torch>=2.0.0,<3.0.0",
+  "pyarrow>=12.0.0,<25.0.0",
+  "h5py>=3.10.0,<4.0.0",
+  "onnx>=1.16.0,<2.0.0",
+  "onnxscript>=0.1.0,<1.0.0",
 ]
 mdmp = [
-  "cryptography>=42.0.0",
+  "cryptography>=42.0.0,<49.0.0",
 ]
 
 [project.scripts]
@@ -87,7 +88,7 @@ iints-sdk-doctor = "iints_sdk_python35_doctor:main"
 [project.entry-points."iints.algorithms"]
 "PID Controller" = "iints.core.algorithms.pid_controller:PIDController"
 "Fixed Basal Bolus" = "iints.core.algorithms.fixed_basal_bolus:FixedBasalBolus"
-"Correction Bolus" = "iints.core.algorithms.correction_bolus:CorrectionBolusAlgorithm"
+"Correction Bolus" = "iints.core.algorithms.correction_bolus:CorrectionBolus"
 "Standard Pump" = "iints.core.algorithms.standard_pump_algo:StandardPumpAlgorithm"
 "Mock Constant Dose" = "iints.core.algorithms.mock_algorithms:ConstantDoseAlgorithm"
 "Mock Random Dose" = "iints.core.algorithms.mock_algorithms:RandomDoseAlgorithm"

{iints_sdk_python35-1.5.3 → iints_sdk_python35-1.5.5}/src/iints/__init__.py

@@ -11,7 +11,7 @@ except ImportError:  # pragma: no cover - Python < 3.8 fallback
 try:
     __version__ = version("iints-sdk-python35")
 except PackageNotFoundError:  # pragma: no cover - source tree fallback
-    __version__ = "1.5.3"
+    __version__ = "1.5.5"
 
 # Note to developers: this SDK is currently maintained by a single author.
 # Please report bugs via GitHub issues and feel free to contribute fixes via PRs.
@@ -47,7 +47,7 @@ except Exception:  # pragma: no cover - fallback if torch/device manager import
         def get_device(self):
             return self._device
 from .core.safety import SafetyConfig, SafetySupervisor
-from .core.devices.models import SensorModel, PumpModel
+from .core.devices.models import SENSOR_PROFILES, SensorModel, PumpModel, create_sensor_model
 from .core.algorithms.standard_pump_algo import StandardPumpAlgorithm
 from .core.algorithms.mock_algorithms import (
     ConstantDoseAlgorithm,
@@ -74,7 +74,7 @@ from .data.importer import (
     summarize_carelink_csv,
 )
 from .data.nightscout import NightscoutConfig, import_nightscout
-from .data.tidepool import TidepoolClient, load_openapi_spec
+from .data.tidepool import TidepoolClient, TidepoolConfig, import_tidepool, load_openapi_spec
 from .data.guardians import mdmp_gate, MDMPGateError
 from .data.synthetic_mirror import generate_synthetic_mirror, SyntheticMirrorArtifact
 from .data.study_corruption import AVAILABLE_STUDY_CORRUPTIONS, apply_study_corruptions, write_corrupted_study_csv
@@ -224,6 +224,8 @@ __all__ = [
     "SafetyConfig",
     "SensorModel",
     "PumpModel",
+    "SENSOR_PROFILES",
+    "create_sensor_model",
     "StandardPumpAlgorithm",
     "ConstantDoseAlgorithm",
     "RandomDoseAlgorithm",
@@ -247,6 +249,8 @@ __all__ = [
     "NightscoutConfig",
     "import_nightscout",
     "TidepoolClient",
+    "TidepoolConfig",
+    "import_tidepool",
     "load_openapi_spec",
     "mdmp_gate",
     "MDMPGateError",

{iints_sdk_python35-1.5.3 → iints_sdk_python35-1.5.5}/src/iints/ai/cli.py

@@ -160,7 +160,7 @@ def _render_local_check(console: Console, status: dict[str, object]) -> None:
         console.print("[bold red]Ollama is too old for the open Ministral 3 runtime.[/bold red]")
 
 
-@app.command("models")
+@app.command(name="models")
 def models() -> None:
     console = Console()
     table = Table(title="IINTS AI Local Mistral Model Guide")
@@ -189,7 +189,7 @@ def models() -> None:
     )
 
 
-@app.command("prepare")
+@app.command(name="prepare")
 def prepare(
     run_dir: Annotated[Path, typer.Argument(help="Run output directory containing results.csv and run_metadata.json.")],
     create_dev_mdmp_cert: Annotated[
@@ -254,7 +254,7 @@ def _build_assistant(
     )
 
 
-@app.command("local-check")
+@app.command(name="local-check")
 def local_check(
     model: Annotated[str, typer.Option(help="Ollama model name to validate locally.")] = DEFAULT_MINISTRAL_MODEL,
     ollama_host: Annotated[Optional[str], typer.Option(help="Override the Ollama base URL.")] = None,
@@ -294,7 +294,7 @@ def local_check(
         raise typer.Exit(code=1)
 
 
-@app.command("explain")
+@app.command(name="explain")
 def explain(
     input_json: Annotated[Path, typer.Argument(help="Prepared run directory or JSON file with a single simulation step or decision context.")],
     mdmp_cert: Annotated[Optional[Path], typer.Option(help="Signed MDMP artifact required before AI analysis can run.")] = None,
@@ -335,7 +335,7 @@ def explain(
         raise typer.Exit(code=1)
 
 
-@app.command("trends")
+@app.command(name="trends")
 def trends(
     input_json: Annotated[Path, typer.Argument(help="Prepared run directory or JSON file with glucose trace data or a run payload.")],
     mdmp_cert: Annotated[Optional[Path], typer.Option(help="Signed MDMP artifact required before AI analysis can run.")] = None,
@@ -376,7 +376,7 @@ def trends(
         raise typer.Exit(code=1)
 
 
-@app.command("anomalies")
+@app.command(name="anomalies")
 def anomalies(
     input_json: Annotated[Path, typer.Argument(help="Prepared run directory or JSON file with simulation results or run summary.")],
     mdmp_cert: Annotated[Optional[Path], typer.Option(help="Signed MDMP artifact required before AI analysis can run.")] = None,
@@ -417,7 +417,7 @@ def anomalies(
         raise typer.Exit(code=1)
 
 
-@app.command("report")
+@app.command(name="report")
 def report(
     input_json: Annotated[Path, typer.Argument(help="Prepared run directory or JSON file with run-level simulation outputs.")],
     mdmp_cert: Annotated[Optional[Path], typer.Option(help="Signed MDMP artifact required before AI analysis can run.")] = None,
@@ -458,7 +458,7 @@ def report(
         raise typer.Exit(code=1)
 
 
-@app.command("review")
+@app.command(name="review")
 def review(
     input_json: Annotated[Path, typer.Argument(help="Prepared run directory or JSON file with run-level simulation outputs.")],
     mdmp_cert: Annotated[Optional[Path], typer.Option(help="Signed MDMP artifact required before AI analysis can run.")] = None,

{iints_sdk_python35-1.5.3 → iints_sdk_python35-1.5.5}/src/iints/analysis/__init__.py

@@ -15,6 +15,12 @@ from .study_protocol import (
     render_study_protocol_markdown,
     write_study_protocol_bundle,
 )
+from .study_experiment import (
+    StudyExperimentConfig,
+    build_study_experiment_template,
+    load_study_experiment_config,
+    render_study_experiment_yaml,
+)
 from .study_analysis import (
     analyze_run_directory,
     analyze_study_directory,
@@ -112,8 +118,11 @@ __all__ = [
     "build_algorithm_registry",
     "build_study_design_payload",
     "build_study_protocol_payload",
+    "build_study_experiment_template",
     "render_study_protocol_markdown",
+    "render_study_experiment_yaml",
     "write_study_protocol_bundle",
+    "load_study_experiment_config",
     "load_study_summary",
     "quality_badges_for_metrics",
     "run_baseline_comparison",
@@ -121,6 +130,7 @@ __all__ = [
     "StudyArmSpec",
     "StudyComparison",
     "StudyDesignPayload",
+    "StudyExperimentConfig",
     "StudyMatrixRow",
     "StudyProfileSpec",
     "StudyRunSummary",

{iints_sdk_python35-1.5.3 → iints_sdk_python35-1.5.5}/src/iints/analysis/baseline.py

@@ -8,6 +8,7 @@ import pandas as pd
 
 from iints.analysis.clinical_metrics import ClinicalMetricsCalculator
 from iints.api.base_algorithm import InsulinAlgorithm
+from iints.core.algorithms.clinical_baseline import ClinicalBaselineAlgorithm
 from iints.core.algorithms.pid_controller import PIDController
 from iints.core.algorithms.standard_pump_algo import StandardPumpAlgorithm
 from iints.core.patient.models import PatientModel
@@ -51,7 +52,10 @@ def run_baseline_comparison(
         }
     )
 
-    baselines: List[Tuple[str, InsulinAlgorithm]] = [("Standard PID", PIDController())]
+    baselines: List[Tuple[str, InsulinAlgorithm]] = [
+        ("Clinical Baseline", ClinicalBaselineAlgorithm()),
+        ("Standard PID", PIDController()),
+    ]
     if compare_standard_pump:
         baselines.append(("Standard Pump", StandardPumpAlgorithm()))
 

{iints_sdk_python35-1.5.3 → iints_sdk_python35-1.5.5}/src/iints/analysis/carelink_workbench.py

@@ -43,7 +43,7 @@ def _round(value: Any, digits: int = 2) -> float | int | None:
         return None
     try:
         number = float(value)
-    except Exception:
+    except (TypeError, ValueError, OverflowError):
         return None
     if math.isnan(number) or math.isinf(number):
         return None

{iints_sdk_python35-1.5.3 → iints_sdk_python35-1.5.5}/src/iints/analysis/eucys_results.py

@@ -70,7 +70,7 @@ def build_eucys_abstract_draft_markdown() -> str:
             "",
             "The central research question is whether a transparent, safety-first benchmark can evaluate candidate insulin-decision algorithms more rigorously than isolated demo runs or single-metric comparisons. "
             "The platform combines virtual patient simulation, baseline comparison, safety-layer analysis, protocol bundles, subgroup summaries, and exportable study artifacts. "
-            "Instead of showing one favorable run, IINTS-AF compares a candidate algorithm against classical baselines such as `PID Controller`, `Standard Pump`, and `Correction Bolus` across predefined patient profiles, scenario families, and random seeds.",
+            "Instead of showing one favorable run, IINTS-AF compares a candidate algorithm against classical baselines such as `Clinical Baseline`, `PID Controller`, `Standard Pump`, and `Correction Bolus` across predefined patient profiles, scenario families, and random seeds.",
             "",
             "In the final benchmark bundle, the platform evaluated **[RUN_COUNT]** runs across **[PROFILE_COUNT]** patient profiles, **[SCENARIO_COUNT]** scenario families, and **[ALGORITHM_COUNT]** algorithms. "
             "The candidate algorithm achieved **[CANDIDATE_TIR]%** time in range compared with **[BASELINE_TIR]%** for the strongest baseline, while the safety analysis showed **[SAFETY_RESULT]**. "
@@ -235,7 +235,7 @@ def build_eucys_filled_abstract_markdown(
             "In this project, I developed **IINTS-AF**, a simulation-first benchmark platform for testing insulin-decision algorithms under fixed study protocols.",
             "",
             "The platform combines virtual patient simulation, baseline comparison, safety-layer analysis, protocol bundles, subgroup summaries, and exportable study artifacts. "
-            "Instead of showing a single favorable run, IINTS-AF compares a candidate algorithm against classical baselines such as `PID Controller`, `Standard Pump`, and `Correction Bolus` across predefined profiles, scenario families, and random seeds.",
+            "Instead of showing a single favorable run, IINTS-AF compares a candidate algorithm against classical baselines such as `Clinical Baseline`, `PID Controller`, `Standard Pump`, and `Correction Bolus` across predefined profiles, scenario families, and random seeds.",
             "",
             f"In the current benchmark bundle, the platform evaluated **{run_count}** runs across **{counts['profile_count']}** patient profiles, **{counts['scenario_count']}** scenario families, and **{counts['algorithm_count']}** algorithms. "
             f"In the clean certified arm, **{candidate_name}** achieved **{candidate_tir}** time in range compared with **{baseline_tir}** for **{strongest_baseline}**, while the safety layer recorded **{safety_result}**. "

{iints_sdk_python35-1.5.3 → iints_sdk_python35-1.5.5}/src/iints/analysis/hardware_benchmark.py

@@ -1,11 +1,17 @@
+from __future__ import annotations
+
+import json
+import logging
 import time
 import subprocess
 import threading
 import psutil
-import json
 from typing import Dict, List, Optional
 from dataclasses import dataclass, asdict
 
+
+logger = logging.getLogger(__name__)
+
 @dataclass
 class PerformanceMetrics:
     timestamp: float
@@ -32,7 +38,8 @@ class HardwareBenchmark:
             with open('/proc/device-tree/model', 'r') as f:
                 model = f.read().strip()
                 return 'jetson' in model.lower()
-        except:
+        except (FileNotFoundError, OSError, ValueError) as exc:
+            logger.debug("Jetson detection unavailable: %s", exc)
             return False
     
     def _get_tegrastats_metrics(self) -> Optional[Dict]:
@@ -51,8 +58,11 @@ class HardwareBenchmark:
                     line = lines[-1]  # Get last line
                     # This is a simplified parser - real implementation would be more robust
                     return {"raw_tegrastats": line}
-        except:
-            pass
+            logger.debug("tegrastats exited with non-zero status: %s", result.returncode)
+        except subprocess.TimeoutExpired as exc:
+            logger.debug("tegrastats timed out: %s", exc)
+        except (FileNotFoundError, OSError, ValueError) as exc:
+            logger.debug("tegrastats unavailable: %s", exc)
         return None
     
     def _collect_metrics(self) -> PerformanceMetrics:
@@ -82,8 +92,8 @@ class HardwareBenchmark:
                 with open('/sys/class/thermal/thermal_zone0/temp', 'r') as f:
                     temp_millicelsius = int(f.read().strip())
                     temperature = temp_millicelsius / 1000.0
-            except:
-                pass
+            except (FileNotFoundError, OSError, ValueError) as exc:
+                logger.debug("temperature probe unavailable: %s", exc)
         
         return PerformanceMetrics(
             timestamp=timestamp,
@@ -218,4 +228,4 @@ class HardwareBenchmark:
     
     def clear_metrics(self):
         """Clear collected metrics."""
-        self.metrics_history.clear()
+        self.metrics_history.clear()

{iints_sdk_python35-1.5.3 → iints_sdk_python35-1.5.5}/src/iints/analysis/reporting.py

@@ -1,5 +1,6 @@
 import os
 import tempfile
+import logging
 from pathlib import Path
 from typing import Any, Dict, Optional
 
@@ -14,6 +15,8 @@ from fpdf.enums import XPos, YPos
 from iints.analysis.clinical_metrics import ClinicalMetricsCalculator
 from iints.utils.plotting import apply_plot_style
 
+logger = logging.getLogger("iints")
+
 
 class ClinicalReportGenerator:
     """Generate a clean, publication-ready PDF report."""
@@ -41,8 +44,8 @@ class ClinicalReportGenerator:
             x_pos = pdf.w - pdf.r_margin - logo_width
             y_pos = 6
             pdf.image(str(logo_path), x=x_pos, y=y_pos, w=logo_width)
-        except Exception:
-            # Fallback silently if image fails to load
+        except (OSError, RuntimeError, ValueError) as exc:
+            logger.debug("Skipping report logo render: %s", exc)
             return
 
     def _plot_glucose(self, df: pd.DataFrame, output_path: Path) -> None:

{iints_sdk_python35-1.5.3 → iints_sdk_python35-1.5.5}/src/iints/analysis/study_engine.py

@@ -9,6 +9,7 @@ from iints.scenarios.study_pack import build_eucys_study_pack
 
 DEFAULT_PROFILE_SET = "clinic_safe_core"
 DEFAULT_BASELINE_ALGORITHMS = [
+    "Clinical Baseline",
     "PID Controller",
     "Standard Pump",
     "Correction Bolus",