iints-sdk-python35 0.1.21__tar.gz → 0.1.22__tar.gz

{iints_sdk_python35-0.1.21/src/iints_sdk_python35.egg-info → iints_sdk_python35-0.1.22}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: iints-sdk-python35
-Version: 0.1.21
+Version: 0.1.22
 Summary: A pre-clinical Edge-AI SDK for diabetes management validation.
 Author-email: Rune Bobbaers <rune.bobbaers@gmail.com>
 Project-URL: Homepage, https://github.com/python35/IINTS-SDK
@@ -50,6 +50,7 @@ Dynamic: license-file
 # IINTS-AF SDK
 [![PyPI version](https://badge.fury.io/py/iints-sdk-python35.svg)](https://badge.fury.io/py/iints-sdk-python35)
 [![Python Package CI](https://github.com/python35/IINTS-SDK/actions/workflows/python-package.yml/badge.svg)](https://github.com/python35/IINTS-SDK/actions/workflows/python-package.yml)
+[![Docs Site](https://github.com/python35/IINTS-SDK/actions/workflows/docs-site.yml/badge.svg)](https://github.com/python35/IINTS-SDK/actions/workflows/docs-site.yml)
 [![Site](https://img.shields.io/badge/site-IINTS--AF-0a66c2?style=flat&logo=firefox-browser&logoColor=white)](https://python35.github.io/IINTS-Site/index.html)
 
 IINTS-AF is a safety-first simulation SDK for insulin algorithm research.
@@ -92,6 +93,16 @@ cd iints_quickstart
 iints presets run --name baseline_t1d --algo algorithms/example_algorithm.py
 ```
 
+Clinical-trial scaffold (MDMP-ready):
+```bash
+iints init --project-name iints_trial --template clinical-trial
+cd iints_trial
+iints data contract-run contracts/clinical_mdmp_contract.yaml data/demo/diabetes_cgm.csv \
+  --output-json audit/contract_data_report.json \
+  --min-mdmp-grade research_grade --fail-on-noncompliant
+iints data mdmp-visualizer audit/contract_data_report.json --output-html audit/mdmp_dashboard.html
+```
+
 One full run with artifacts:
 ```bash
 iints run-full \
@@ -128,9 +139,19 @@ outputs = iints.run_simulation(
 ```bash
 # Environment and validation checks
 iints doctor --smoke-run
+iints study-ready --algo algorithms/example_algorithm.py --output-dir results/study_ready
 iints validation-profiles
 iints validate-run --results-csv results/run_full/results.csv --profile research_default
 iints contract-verify --output-json results/contract_report.json
+iints data contract-template --output-path data_contract.yaml
+iints data contract-run data_contract.yaml data/my_cgm.csv --output-json results/contract_data_report.json
+iints data contract-run data_contract.yaml data/my_cgm.csv --min-mdmp-grade research_grade --fail-on-noncompliant
+iints data synthetic-mirror data/my_cgm.csv data_contract.yaml --output-csv data/synthetic_mirror.csv --output-json results/synthetic_mirror_report.json
+iints data mdmp-visualizer results/contract_data_report.json --output-html results/mdmp_dashboard.html
+iints mdmp template --output-path mdmp_contract.yaml
+iints mdmp validate mdmp_contract.yaml data/my_cgm.csv --output-json results/mdmp_report.json
+iints mdmp synthetic-mirror data/my_cgm.csv mdmp_contract.yaml --output-csv data/synthetic_mirror.csv --output-json results/synthetic_mirror_report.json
+iints mdmp visualizer results/mdmp_report.json --output-html results/mdmp_dashboard.html
 iints replay-check --algo algorithms/example_algorithm.py --output-json results/replay_check.json
 iints golden-benchmark --algo algorithms/example_algorithm.py --output-json results/golden_benchmark.json
 
@@ -145,15 +166,50 @@ iints research registry-list --registry models/registry.json
 iints research registry-promote --registry models/registry.json --run-id <run-id> --stage validated
 ```
 
+`iints study-ready` produces a complete bundle by default:
+- simulation outputs
+- `validation_report.json`
+- `sources_manifest.json`
+- `SUMMARY.md` (human-readable quick review)
+
+`iints data contract-run` writes deterministic fingerprints plus an MDMP grade:
+- `draft`
+- `research_grade`
+- `clinical_grade`
+
+`iints data mdmp-visualizer` turns a contract report JSON into a shareable single-file HTML dashboard for audit review.
+
+`iints data synthetic-mirror` generates a privacy-safe synthetic dataset that keeps schema and broad statistical behavior, then validates it with the same MDMP gates.
+
+## MDMP as Separate Protocol Surface
+
+MDMP now has a dedicated namespace:
+- Python imports: `iints.mdmp`
+- CLI commands: `iints mdmp ...`
+
+The older `iints data ...` MDMP commands remain supported for backward compatibility.
+
+MDMP Auto-Guardians enforce quality gates directly in Python pipelines:
+```python
+import pandas as pd
+from iints import mdmp_gate
+
+@mdmp_gate("contracts/clinical_mdmp_contract.yaml", min_grade="clinical_grade")
+def process(df: pd.DataFrame) -> int:
+    return len(df)
+```
+
 ## Demos and Notebooks
 - Demo scripts: [examples/demos](https://github.com/python35/IINTS-SDK/tree/main/examples/demos)
 - Notebook tutorials: [examples/notebooks](https://github.com/python35/IINTS-SDK/tree/main/examples/notebooks)
 
 ## Documentation
+- Docs site (GitHub Pages): [https://python35.github.io/IINTS-SDK/](https://python35.github.io/IINTS-SDK/)
 - Manual (PDF): [docs/manuals/IINTS-AF_SDK_Manual.pdf](https://github.com/python35/IINTS-SDK/blob/main/docs/manuals/IINTS-AF_SDK_Manual.pdf)
 - Comprehensive guide: [docs/COMPREHENSIVE_GUIDE.md](https://github.com/python35/IINTS-SDK/blob/main/docs/COMPREHENSIVE_GUIDE.md)
 - Technical README: [docs/TECHNICAL_README.md](https://github.com/python35/IINTS-SDK/blob/main/docs/TECHNICAL_README.md)
 - Plain-language guide: [docs/PLAIN_LANGUAGE_GUIDE.md](https://github.com/python35/IINTS-SDK/blob/main/docs/PLAIN_LANGUAGE_GUIDE.md)
+- MDMP (draft): [docs/MDMP.md](https://github.com/python35/IINTS-SDK/blob/main/docs/MDMP.md)
 - Evidence base (peer-reviewed sources): [docs/EVIDENCE_BASE.md](https://github.com/python35/IINTS-SDK/blob/main/docs/EVIDENCE_BASE.md)
 - Research track: [research/README.md](https://github.com/python35/IINTS-SDK/blob/main/research/README.md)
 

{iints_sdk_python35-0.1.21 → iints_sdk_python35-0.1.22}/README.md

@@ -1,6 +1,7 @@
 # IINTS-AF SDK
 [![PyPI version](https://badge.fury.io/py/iints-sdk-python35.svg)](https://badge.fury.io/py/iints-sdk-python35)
 [![Python Package CI](https://github.com/python35/IINTS-SDK/actions/workflows/python-package.yml/badge.svg)](https://github.com/python35/IINTS-SDK/actions/workflows/python-package.yml)
+[![Docs Site](https://github.com/python35/IINTS-SDK/actions/workflows/docs-site.yml/badge.svg)](https://github.com/python35/IINTS-SDK/actions/workflows/docs-site.yml)
 [![Site](https://img.shields.io/badge/site-IINTS--AF-0a66c2?style=flat&logo=firefox-browser&logoColor=white)](https://python35.github.io/IINTS-Site/index.html)
 
 IINTS-AF is a safety-first simulation SDK for insulin algorithm research.
@@ -43,6 +44,16 @@ cd iints_quickstart
 iints presets run --name baseline_t1d --algo algorithms/example_algorithm.py
 ```
 
+Clinical-trial scaffold (MDMP-ready):
+```bash
+iints init --project-name iints_trial --template clinical-trial
+cd iints_trial
+iints data contract-run contracts/clinical_mdmp_contract.yaml data/demo/diabetes_cgm.csv \
+  --output-json audit/contract_data_report.json \
+  --min-mdmp-grade research_grade --fail-on-noncompliant
+iints data mdmp-visualizer audit/contract_data_report.json --output-html audit/mdmp_dashboard.html
+```
+
 One full run with artifacts:
 ```bash
 iints run-full \
@@ -79,9 +90,19 @@ outputs = iints.run_simulation(
 ```bash
 # Environment and validation checks
 iints doctor --smoke-run
+iints study-ready --algo algorithms/example_algorithm.py --output-dir results/study_ready
 iints validation-profiles
 iints validate-run --results-csv results/run_full/results.csv --profile research_default
 iints contract-verify --output-json results/contract_report.json
+iints data contract-template --output-path data_contract.yaml
+iints data contract-run data_contract.yaml data/my_cgm.csv --output-json results/contract_data_report.json
+iints data contract-run data_contract.yaml data/my_cgm.csv --min-mdmp-grade research_grade --fail-on-noncompliant
+iints data synthetic-mirror data/my_cgm.csv data_contract.yaml --output-csv data/synthetic_mirror.csv --output-json results/synthetic_mirror_report.json
+iints data mdmp-visualizer results/contract_data_report.json --output-html results/mdmp_dashboard.html
+iints mdmp template --output-path mdmp_contract.yaml
+iints mdmp validate mdmp_contract.yaml data/my_cgm.csv --output-json results/mdmp_report.json
+iints mdmp synthetic-mirror data/my_cgm.csv mdmp_contract.yaml --output-csv data/synthetic_mirror.csv --output-json results/synthetic_mirror_report.json
+iints mdmp visualizer results/mdmp_report.json --output-html results/mdmp_dashboard.html
 iints replay-check --algo algorithms/example_algorithm.py --output-json results/replay_check.json
 iints golden-benchmark --algo algorithms/example_algorithm.py --output-json results/golden_benchmark.json
 
@@ -96,15 +117,50 @@ iints research registry-list --registry models/registry.json
 iints research registry-promote --registry models/registry.json --run-id <run-id> --stage validated
 ```
 
+`iints study-ready` produces a complete bundle by default:
+- simulation outputs
+- `validation_report.json`
+- `sources_manifest.json`
+- `SUMMARY.md` (human-readable quick review)
+
+`iints data contract-run` writes deterministic fingerprints plus an MDMP grade:
+- `draft`
+- `research_grade`
+- `clinical_grade`
+
+`iints data mdmp-visualizer` turns a contract report JSON into a shareable single-file HTML dashboard for audit review.
+
+`iints data synthetic-mirror` generates a privacy-safe synthetic dataset that keeps schema and broad statistical behavior, then validates it with the same MDMP gates.
+
+## MDMP as Separate Protocol Surface
+
+MDMP now has a dedicated namespace:
+- Python imports: `iints.mdmp`
+- CLI commands: `iints mdmp ...`
+
+The older `iints data ...` MDMP commands remain supported for backward compatibility.
+
+MDMP Auto-Guardians enforce quality gates directly in Python pipelines:
+```python
+import pandas as pd
+from iints import mdmp_gate
+
+@mdmp_gate("contracts/clinical_mdmp_contract.yaml", min_grade="clinical_grade")
+def process(df: pd.DataFrame) -> int:
+    return len(df)
+```
+
 ## Demos and Notebooks
 - Demo scripts: [examples/demos](https://github.com/python35/IINTS-SDK/tree/main/examples/demos)
 - Notebook tutorials: [examples/notebooks](https://github.com/python35/IINTS-SDK/tree/main/examples/notebooks)
 
 ## Documentation
+- Docs site (GitHub Pages): [https://python35.github.io/IINTS-SDK/](https://python35.github.io/IINTS-SDK/)
 - Manual (PDF): [docs/manuals/IINTS-AF_SDK_Manual.pdf](https://github.com/python35/IINTS-SDK/blob/main/docs/manuals/IINTS-AF_SDK_Manual.pdf)
 - Comprehensive guide: [docs/COMPREHENSIVE_GUIDE.md](https://github.com/python35/IINTS-SDK/blob/main/docs/COMPREHENSIVE_GUIDE.md)
 - Technical README: [docs/TECHNICAL_README.md](https://github.com/python35/IINTS-SDK/blob/main/docs/TECHNICAL_README.md)
 - Plain-language guide: [docs/PLAIN_LANGUAGE_GUIDE.md](https://github.com/python35/IINTS-SDK/blob/main/docs/PLAIN_LANGUAGE_GUIDE.md)
+- MDMP (draft): [docs/MDMP.md](https://github.com/python35/IINTS-SDK/blob/main/docs/MDMP.md)
 - Evidence base (peer-reviewed sources): [docs/EVIDENCE_BASE.md](https://github.com/python35/IINTS-SDK/blob/main/docs/EVIDENCE_BASE.md)
 - Research track: [research/README.md](https://github.com/python35/IINTS-SDK/blob/main/research/README.md)
 

{iints_sdk_python35-0.1.21 → iints_sdk_python35-0.1.22}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "iints-sdk-python35" 
-version = "0.1.21"
+version = "0.1.22"
 authors = [
   { name="Rune Bobbaers", email="rune.bobbaers@gmail.com" },
 ]

{iints_sdk_python35-0.1.21 → iints_sdk_python35-0.1.22}/src/iints/__init__.py

@@ -3,7 +3,7 @@
 import pandas as pd # Required for type hints like pd.DataFrame
 from typing import Optional
 
-__version__ = "0.1.21"
+__version__ = "0.1.22"
 
 # Note to developers: this SDK is currently maintained by a single author.
 # Please report bugs via GitHub issues and feel free to contribute fixes via PRs.
@@ -56,6 +56,8 @@ from .data.importer import (
 )
 from .data.nightscout import NightscoutConfig, import_nightscout
 from .data.tidepool import TidepoolClient, load_openapi_spec
+from .data.guardians import mdmp_gate, MDMPGateError
+from .data.synthetic_mirror import generate_synthetic_mirror, SyntheticMirrorArtifact
 from .analysis.metrics import generate_benchmark_metrics # Added for benchmark
 from .analysis.reporting import ClinicalReportGenerator
 from .analysis.edge_efficiency import EnergyEstimate, estimate_energy_per_decision
@@ -158,6 +160,10 @@ __all__ = [
     "import_nightscout",
     "TidepoolClient",
     "load_openapi_spec",
+    "mdmp_gate",
+    "MDMPGateError",
+    "generate_synthetic_mirror",
+    "SyntheticMirrorArtifact",
     # Analysis Metrics
     "generate_benchmark_metrics",
     "ClinicalReportGenerator",