iints-sdk-python35 0.1.14__tar.gz → 0.1.15__tar.gz

{iints_sdk_python35-0.1.14/src/iints_sdk_python35.egg-info → iints_sdk_python35-0.1.15}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: iints-sdk-python35
-Version: 0.1.14
+Version: 0.1.15
 Summary: A pre-clinical Edge-AI SDK for diabetes management validation.
 Author-email: Rune Bobbaers <rune.bobbaers@gmail.com>
 Project-URL: Homepage, https://github.com/python35/IINTS-SDK
@@ -39,6 +39,8 @@ Dynamic: license-file
 [![PyPI version](https://badge.fury.io/py/iints-sdk-python35.svg)](https://badge.fury.io/py/iints-sdk-python35)
 [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/python35/IINTS-SDK/blob/main/examples/notebooks/00_Quickstart.ipynb)
 [![Python Package CI](https://github.com/python35/IINTS-SDK/actions/workflows/python-package.yml/badge.svg)](https://github.com/python35/IINTS-SDK/actions/workflows/python-package.yml)
+[![Coverage](https://raw.githubusercontent.com/python35/IINTS-SDK/main/badges/coverage.svg)](https://github.com/python35/IINTS-SDK/actions/workflows/health-badges.yml)
+[![Docs Coverage](https://raw.githubusercontent.com/python35/IINTS-SDK/main/badges/docs.svg)](https://github.com/python35/IINTS-SDK/actions/workflows/health-badges.yml)
 
 <div style="text-align:center;">
   <img src="Ontwerp zonder titel.png" alt="" style="display:block; margin:0 auto;">

{iints_sdk_python35-0.1.14 → iints_sdk_python35-0.1.15}/README.md

@@ -2,6 +2,8 @@
 [![PyPI version](https://badge.fury.io/py/iints-sdk-python35.svg)](https://badge.fury.io/py/iints-sdk-python35)
 [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/python35/IINTS-SDK/blob/main/examples/notebooks/00_Quickstart.ipynb)
 [![Python Package CI](https://github.com/python35/IINTS-SDK/actions/workflows/python-package.yml/badge.svg)](https://github.com/python35/IINTS-SDK/actions/workflows/python-package.yml)
+[![Coverage](https://raw.githubusercontent.com/python35/IINTS-SDK/main/badges/coverage.svg)](https://github.com/python35/IINTS-SDK/actions/workflows/health-badges.yml)
+[![Docs Coverage](https://raw.githubusercontent.com/python35/IINTS-SDK/main/badges/docs.svg)](https://github.com/python35/IINTS-SDK/actions/workflows/health-badges.yml)
 
 <div style="text-align:center;">
   <img src="Ontwerp zonder titel.png" alt="" style="display:block; margin:0 auto;">

{iints_sdk_python35-0.1.14 → iints_sdk_python35-0.1.15}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "iints-sdk-python35" 
-version = "0.1.14"
+version = "0.1.15"
 authors = [
   { name="Rune Bobbaers", email="rune.bobbaers@gmail.com" },
 ]

{iints_sdk_python35-0.1.14 → iints_sdk_python35-0.1.15}/src/iints/__init__.py

@@ -3,7 +3,7 @@
 import pandas as pd # Required for type hints like pd.DataFrame
 from typing import Optional
 
-__version__ = "0.1.14"
+__version__ = "0.1.15"
 
 # API Components for Algorithm Development
 from .api.base_algorithm import (

{iints_sdk_python35-0.1.14 → iints_sdk_python35-0.1.15}/src/iints/cli/cli.py

@@ -516,7 +516,7 @@ def presets_run(
         simulator.add_stress_event(event)
 
     if output_dir is None:
-        output_dir = algo.parent / "results" / "presets"
+        output_dir = Path.cwd() / "results" / "presets"
     output_dir = output_dir.expanduser()
     if not output_dir.is_absolute():
         output_dir = (Path.cwd() / output_dir).resolve()
@@ -528,7 +528,8 @@ def presets_run(
     algo_name = algorithm_instance.get_algorithm_metadata().name.replace(" ", "_").lower()
     results_file = output_dir / f"preset_{name}_{algo_name}.csv"
     results_df.to_csv(results_file, index=False)
-    console.print(f"Results saved to: [link=file://{results_file}]{results_file}[/link]")
+    results_link = results_file.as_uri()
+    console.print(f"Results saved to: [link={results_link}]{results_file}[/link]")
 
     audit_dir = output_dir / "audit"
     try:
@@ -554,7 +555,8 @@ def presets_run(
 
     report_path = output_dir / f"preset_{name}_{algo_name}.pdf"
     iints.generate_report(results_df, str(report_path), safety_report)
-    console.print(f"PDF report saved to: [link=file://{report_path}]{report_path}[/link]")
+    report_link = report_path.as_uri()
+    console.print(f"PDF report saved to: [link={report_link}]{report_path}[/link]")
 
 
 @presets_app.command("create")

{iints_sdk_python35-0.1.14 → iints_sdk_python35-0.1.15}/src/iints/data/registry.py

@@ -5,20 +5,16 @@ import urllib.request
 import zipfile
 import hashlib
 import shutil
-from dataclasses import dataclass
 from pathlib import Path
-from typing import Any, Dict, List, Optional
+from typing import Any, Dict, List, Optional, IO, cast
 
 try:  # Python 3.9+
     from importlib.resources import files
-    from importlib.resources.abc import Traversable
 except Exception:  # pragma: no cover
-    from importlib import resources as files  # type: ignore
-    try:
-        from importlib.abc import Traversable  # type: ignore
-    except Exception:  # Python 3.14 moved Traversable
-        class Traversable:  # type: ignore
-            pass
+    files = None  # type: ignore
+    from importlib import resources
+else:
+    from importlib import resources
 
 
 class DatasetRegistryError(RuntimeError):
@@ -29,16 +25,17 @@ class DatasetFetchError(RuntimeError):
     pass
 
 
-def _registry_path() -> Traversable:
+def _read_registry_text() -> str:
     try:
-        return files("iints.data").joinpath("datasets.json")  # type: ignore[attr-defined]
+        if files is not None:
+            return files("iints.data").joinpath("datasets.json").read_text()  # type: ignore[call-arg]
+        return resources.read_text("iints.data", "datasets.json")
     except Exception as exc:
         raise DatasetRegistryError(f"Unable to locate datasets.json: {exc}") from exc
 
 
 def load_dataset_registry() -> List[Dict[str, Any]]:
-    registry_path = _registry_path()
-    return json.loads(registry_path.read_text())
+    return json.loads(_read_registry_text())
 
 
 def get_dataset(dataset_id: str) -> Dict[str, Any]:
@@ -95,6 +92,17 @@ def _maybe_extract_zip(path: Path, output_dir: Path) -> None:
         raise DatasetFetchError(f"Failed to extract {path.name}: {exc}") from exc
 
 
+def _open_bundled_binary(bundled_path: str) -> IO[bytes]:
+    if files is not None:
+        return cast(IO[bytes], files("iints.data").joinpath(bundled_path).open("rb"))  # type: ignore[call-arg]
+    parts = bundled_path.split("/")
+    if len(parts) > 1:
+        package = ".".join(["iints", "data", *parts[:-1]])
+        resource = parts[-1]
+        return cast(IO[bytes], resources.open_binary(package, resource))
+    return cast(IO[bytes], resources.open_binary("iints.data", bundled_path))
+
+
 def fetch_dataset(
     dataset_id: str,
     output_dir: Path,
@@ -109,15 +117,14 @@ def fetch_dataset(
         bundled_path = dataset.get("bundled_path")
         if not bundled_path:
             raise DatasetFetchError("Bundled dataset missing bundled_path entry.")
-        try:
-            source_path = files("iints.data").joinpath(bundled_path)  # type: ignore[attr-defined]
-        except Exception as exc:
-            raise DatasetFetchError(f"Unable to locate bundled dataset: {exc}") from exc
         output_dir.mkdir(parents=True, exist_ok=True)
         target = output_dir / Path(bundled_path).name
         # Traversable may not be a real filesystem path; stream bytes instead.
-        with source_path.open("rb") as src, target.open("wb") as dst:
-            shutil.copyfileobj(src, dst)
+        try:
+            with _open_bundled_binary(bundled_path) as src, target.open("wb") as dst:
+                shutil.copyfileobj(src, dst)
+        except Exception as exc:
+            raise DatasetFetchError(f"Unable to locate bundled dataset: {exc}") from exc
         expected = _get_expected_hash(dataset, 0)
         if verify and expected:
             actual = _sha256(target)

{iints_sdk_python35-0.1.14 → iints_sdk_python35-0.1.15/src/iints_sdk_python35.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: iints-sdk-python35
-Version: 0.1.14
+Version: 0.1.15
 Summary: A pre-clinical Edge-AI SDK for diabetes management validation.
 Author-email: Rune Bobbaers <rune.bobbaers@gmail.com>
 Project-URL: Homepage, https://github.com/python35/IINTS-SDK
@@ -39,6 +39,8 @@ Dynamic: license-file
 [![PyPI version](https://badge.fury.io/py/iints-sdk-python35.svg)](https://badge.fury.io/py/iints-sdk-python35)
 [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/python35/IINTS-SDK/blob/main/examples/notebooks/00_Quickstart.ipynb)
 [![Python Package CI](https://github.com/python35/IINTS-SDK/actions/workflows/python-package.yml/badge.svg)](https://github.com/python35/IINTS-SDK/actions/workflows/python-package.yml)
+[![Coverage](https://raw.githubusercontent.com/python35/IINTS-SDK/main/badges/coverage.svg)](https://github.com/python35/IINTS-SDK/actions/workflows/health-badges.yml)
+[![Docs Coverage](https://raw.githubusercontent.com/python35/IINTS-SDK/main/badges/docs.svg)](https://github.com/python35/IINTS-SDK/actions/workflows/health-badges.yml)
 
 <div style="text-align:center;">
   <img src="Ontwerp zonder titel.png" alt="" style="display:block; margin:0 auto;">