igvf-client 62.0.0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- igvf_client-62.0.0/LICENSE +21 -0
- igvf_client-62.0.0/PKG-INFO +25 -0
- igvf_client-62.0.0/README.md +296 -0
- igvf_client-62.0.0/igvf_client/__init__.py +160 -0
- igvf_client-62.0.0/igvf_client/api/__init__.py +5 -0
- igvf_client-62.0.0/igvf_client/api/igvf_api.py +73592 -0
- igvf_client-62.0.0/igvf_client/api_client.py +772 -0
- igvf_client-62.0.0/igvf_client/api_response.py +21 -0
- igvf_client-62.0.0/igvf_client/configuration.py +461 -0
- igvf_client-62.0.0/igvf_client/exceptions.py +199 -0
- igvf_client-62.0.0/igvf_client/models/__init__.py +143 -0
- igvf_client-62.0.0/igvf_client/models/access_key.py +166 -0
- igvf_client-62.0.0/igvf_client/models/access_key_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/alignment_file.py +321 -0
- igvf_client-62.0.0/igvf_client/models/alignment_file_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/analysis_set.py +253 -0
- igvf_client-62.0.0/igvf_client/models/analysis_set_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/analysis_step.py +237 -0
- igvf_client-62.0.0/igvf_client/models/analysis_step_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/analysis_step_version.py +170 -0
- igvf_client-62.0.0/igvf_client/models/analysis_step_version_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/assay_term.py +217 -0
- igvf_client-62.0.0/igvf_client/models/assay_term_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/attachment.py +110 -0
- igvf_client-62.0.0/igvf_client/models/attachment1.py +110 -0
- igvf_client-62.0.0/igvf_client/models/auxiliary_set.py +233 -0
- igvf_client-62.0.0/igvf_client/models/auxiliary_set_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/award.py +230 -0
- igvf_client-62.0.0/igvf_client/models/award_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/biomarker.py +200 -0
- igvf_client-62.0.0/igvf_client/models/biomarker_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/configuration_file.py +285 -0
- igvf_client-62.0.0/igvf_client/models/configuration_file_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/construct_library_set.py +387 -0
- igvf_client-62.0.0/igvf_client/models/construct_library_set_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/crispr_modification.py +262 -0
- igvf_client-62.0.0/igvf_client/models/crispr_modification_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/curated_set.py +245 -0
- igvf_client-62.0.0/igvf_client/models/curated_set_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/degron_modification.py +238 -0
- igvf_client-62.0.0/igvf_client/models/degron_modification_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/document.py +211 -0
- igvf_client-62.0.0/igvf_client/models/document_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/gene.py +245 -0
- igvf_client-62.0.0/igvf_client/models/gene_location.py +121 -0
- igvf_client-62.0.0/igvf_client/models/gene_location1.py +108 -0
- igvf_client-62.0.0/igvf_client/models/gene_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/genome_browser_annotation_file.py +321 -0
- igvf_client-62.0.0/igvf_client/models/genome_browser_annotation_file_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/human_donor.py +269 -0
- igvf_client-62.0.0/igvf_client/models/human_donor_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/image.py +187 -0
- igvf_client-62.0.0/igvf_client/models/image_file.py +283 -0
- igvf_client-62.0.0/igvf_client/models/image_file_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/image_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/in_vitro_system.py +449 -0
- igvf_client-62.0.0/igvf_client/models/in_vitro_system_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/index_file.py +295 -0
- igvf_client-62.0.0/igvf_client/models/index_file_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/institutional_certificate.py +209 -0
- igvf_client-62.0.0/igvf_client/models/institutional_certificate_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/item.py +1125 -0
- igvf_client-62.0.0/igvf_client/models/item_type.py +87 -0
- igvf_client-62.0.0/igvf_client/models/lab.py +192 -0
- igvf_client-62.0.0/igvf_client/models/lab_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/limit.py +158 -0
- igvf_client-62.0.0/igvf_client/models/locus.py +121 -0
- igvf_client-62.0.0/igvf_client/models/locus1.py +108 -0
- igvf_client-62.0.0/igvf_client/models/matrix_file.py +312 -0
- igvf_client-62.0.0/igvf_client/models/matrix_file_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/measurement_set.py +292 -0
- igvf_client-62.0.0/igvf_client/models/measurement_set_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/model_file.py +291 -0
- igvf_client-62.0.0/igvf_client/models/model_file_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/model_set.py +278 -0
- igvf_client-62.0.0/igvf_client/models/model_set_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/multiplexed_sample.py +324 -0
- igvf_client-62.0.0/igvf_client/models/multiplexed_sample_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/no_results_response.py +161 -0
- igvf_client-62.0.0/igvf_client/models/no_results_response_columns_value.py +87 -0
- igvf_client-62.0.0/igvf_client/models/no_results_response_facet_groups_inner.py +91 -0
- igvf_client-62.0.0/igvf_client/models/no_results_response_facets_inner.py +107 -0
- igvf_client-62.0.0/igvf_client/models/no_results_response_facets_inner_terms_inner.py +89 -0
- igvf_client-62.0.0/igvf_client/models/no_results_response_filters_inner.py +91 -0
- igvf_client-62.0.0/igvf_client/models/no_results_response_sort_value.py +89 -0
- igvf_client-62.0.0/igvf_client/models/open_reading_frame.py +200 -0
- igvf_client-62.0.0/igvf_client/models/open_reading_frame_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/output_content_type.py +272 -0
- igvf_client-62.0.0/igvf_client/models/output_content_type_any_of.py +158 -0
- igvf_client-62.0.0/igvf_client/models/page.py +203 -0
- igvf_client-62.0.0/igvf_client/models/page_layout.py +95 -0
- igvf_client-62.0.0/igvf_client/models/page_layout_components.py +93 -0
- igvf_client-62.0.0/igvf_client/models/page_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/phenotype_term.py +198 -0
- igvf_client-62.0.0/igvf_client/models/phenotype_term_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/phenotypic_feature.py +196 -0
- igvf_client-62.0.0/igvf_client/models/phenotypic_feature_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/platform_term.py +223 -0
- igvf_client-62.0.0/igvf_client/models/platform_term_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/prediction_set.py +274 -0
- igvf_client-62.0.0/igvf_client/models/prediction_set_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/primary_cell.py +402 -0
- igvf_client-62.0.0/igvf_client/models/primary_cell_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/publication.py +232 -0
- igvf_client-62.0.0/igvf_client/models/publication_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/reference_file.py +329 -0
- igvf_client-62.0.0/igvf_client/models/reference_file_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/related_donor.py +96 -0
- igvf_client-62.0.0/igvf_client/models/rodent_donor.py +277 -0
- igvf_client-62.0.0/igvf_client/models/rodent_donor_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/sample_term.py +208 -0
- igvf_client-62.0.0/igvf_client/models/sample_term_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/search_facet.py +91 -0
- igvf_client-62.0.0/igvf_client/models/search_result_item.py +1125 -0
- igvf_client-62.0.0/igvf_client/models/search_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/sequence_file.py +371 -0
- igvf_client-62.0.0/igvf_client/models/sequence_file_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/signal_file.py +341 -0
- igvf_client-62.0.0/igvf_client/models/signal_file_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/software.py +209 -0
- igvf_client-62.0.0/igvf_client/models/software_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/software_version.py +188 -0
- igvf_client-62.0.0/igvf_client/models/software_version_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/source.py +188 -0
- igvf_client-62.0.0/igvf_client/models/source_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/tabular_file.py +327 -0
- igvf_client-62.0.0/igvf_client/models/tabular_file_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/technical_sample.py +321 -0
- igvf_client-62.0.0/igvf_client/models/technical_sample_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/tile.py +102 -0
- igvf_client-62.0.0/igvf_client/models/tissue.py +415 -0
- igvf_client-62.0.0/igvf_client/models/tissue_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/treatment.py +294 -0
- igvf_client-62.0.0/igvf_client/models/treatment_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/user.py +220 -0
- igvf_client-62.0.0/igvf_client/models/user_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/whole_organism.py +387 -0
- igvf_client-62.0.0/igvf_client/models/whole_organism_results.py +111 -0
- igvf_client-62.0.0/igvf_client/models/workflow.py +233 -0
- igvf_client-62.0.0/igvf_client/models/workflow_results.py +111 -0
- igvf_client-62.0.0/igvf_client/py.typed +0 -0
- igvf_client-62.0.0/igvf_client/rest.py +257 -0
- igvf_client-62.0.0/igvf_client.egg-info/PKG-INFO +25 -0
- igvf_client-62.0.0/igvf_client.egg-info/SOURCES.txt +149 -0
- igvf_client-62.0.0/igvf_client.egg-info/dependency_links.txt +1 -0
- igvf_client-62.0.0/igvf_client.egg-info/requires.txt +4 -0
- igvf_client-62.0.0/igvf_client.egg-info/top_level.txt +1 -0
- igvf_client-62.0.0/pyproject.toml +71 -0
- igvf_client-62.0.0/setup.cfg +7 -0
- igvf_client-62.0.0/setup.py +49 -0
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MIT License
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Copyright (c) 2024 IGVF-DACC
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in all
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copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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SOFTWARE.
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Metadata-Version: 2.2
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Name: igvf-client
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Version: 62.0.0
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Summary: IGVF Project API
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Home-page: https://github.com/iGVF-DACC/igvf-python-client
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Author: IGVF DACC
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Author-email: encode-help@lists.stanford.edu
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Keywords: OpenAPI,OpenAPI-Generator,IGVF Project API
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Description-Content-Type: text/markdown
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License-File: LICENSE
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Requires-Dist: urllib3<2.1.0,>=1.25.3
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Requires-Dist: python-dateutil
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Requires-Dist: pydantic>=2
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Dynamic: author
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Dynamic: description
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Autogenerated Python client for the IGVF API
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# igvf-client
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The Python client is autogenerated based on this [IGVF OpenAPI specification](https://igvf-dacc.github.io/igvf-client-openapi-spec/), which exposes `search`, `collection`, and other read endpoints from the [IGVF Data Portal](https://data.igvf.org).
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*Note while the API endpoints are relatively stable, the underlying data model is still evolving, and changing fields/types can cause breaking changes. The latest version of the client reflects the latest version of the schema used by the API.*
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- API version: 62.0.0
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- Package version: 62.0.0
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- Generator version: 7.7.0
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- Build package: org.openapitools.codegen.languages.PythonClientCodegen
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## Requirements.
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Python 3.9+
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## Installation & Usage
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Pip install:
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```sh
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$ pip install igvf-client
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```
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Or clone the repo and and install:
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```sh
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$ git clone https://github.com/IGVF-DACC/igvf-python-client
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$ cd igvf-python-client
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$ pip install -e .
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```
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Then import the package:
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```python
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$ python
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>>> import igvf_client
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```
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## Examples
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```python
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from igvf_client import IgvfApi
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api = IgvfApi()
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# Search for Software that matches query `abc`.
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r = api.search(query='abc', type=['Software'])
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# Print total number of results and list of results in `@graph`.
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print(r.graph)
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# Pull first item, unwrap to underlying Software item with `actual_instance`.
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# Print Software item and specific fields.
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print(software_item)
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print(software_item.id)
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print(software_item.description)
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# Get the Lab item based on the lab @id in the Software item.
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# Print lab and specific field.
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print(lab)
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print(lab.title)
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```
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### Optional authorization
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You can make authenticated requests (e.g. to view unreleased data) if you pass the access key/secret key associated with your user when instantiating the client.
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```python
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from igvf_client import Configuration
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from igvf_client import ApiClient
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from igvf_client import IgvfApi
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config = Configuration(
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access_key = os.environ["IGVF_ACCESS_KEY"],
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secret_access_key = os.environ["IGVF_SECRET_ACCESS_KEY"]
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)
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client = ApiClient(config)
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api = IgvfApi(client)
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api.sequence_files(status=['in progress']).total # 8878
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```
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### More examples
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See other examples in [examples.ipynb](examples.ipynb) and [test_endpoints.py](test/e2e/test_endpoints.py)
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Refer to the documentation for a full specification of endpoint inputs and outputs and model fields.
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## Documentation for API Endpoints
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### **General Endpoints**
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Class | Method | HTTP request | Description
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------------ | ------------- | ------------- | -------------
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*IgvfApi* | [**get_by_id**](docs/IgvfApi.md#get_by_id) | **GET** /{resource_id} | Get item information
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*IgvfApi* | [**search**](docs/IgvfApi.md#search) | **GET** /search | Search for items on the IGVF Data Portal.
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*IgvfApi* | [**schemas**](docs/IgvfApi.md#schemas) | **GET** /profiles | Retrieve JSON schemas for all item types
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*IgvfApi* | [**schema_for_item_type**](docs/IgvfApi.md#schema_for_item_type) | **GET** /profiles/{item_type} | Retrieve JSON schema for item type
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*IgvfApi* | [**report**](docs/IgvfApi.md#report) | **GET** /multireport.tsv | Generate a TSV file report based on search query. All results are returned.
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*IgvfApi* | [**download**](docs/IgvfApi.md#download) | **GET** /{file_id}/@@download | Download file.
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*IgvfApi* | [**batch_download**](docs/IgvfApi.md#batch_download) | **GET** /batch-download | List files to download based on search query. All results are returned.
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### **Collection Endpoints**
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Class | Method | HTTP request | Description
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*IgvfApi* | [**access_keys**](docs/IgvfApi.md#access_keys) | **GET** /access-keys/@@listing | List items in the AccessKey collection.
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*IgvfApi* | [**alignment_files**](docs/IgvfApi.md#alignment_files) | **GET** /alignment-files/@@listing | List items in the AlignmentFile collection.
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*IgvfApi* | [**analysis_sets**](docs/IgvfApi.md#analysis_sets) | **GET** /analysis-sets/@@listing | List items in the AnalysisSet collection.
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*IgvfApi* | [**analysis_step_versions**](docs/IgvfApi.md#analysis_step_versions) | **GET** /analysis-step-versions/@@listing | List items in the AnalysisStepVersion collection.
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*IgvfApi* | [**analysis_steps**](docs/IgvfApi.md#analysis_steps) | **GET** /analysis-steps/@@listing | List items in the AnalysisStep collection.
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*IgvfApi* | [**assay_terms**](docs/IgvfApi.md#assay_terms) | **GET** /assay-terms/@@listing | List items in the AssayTerm collection.
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*IgvfApi* | [**auxiliary_sets**](docs/IgvfApi.md#auxiliary_sets) | **GET** /auxiliary-sets/@@listing | List items in the AuxiliarySet collection.
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*IgvfApi* | [**awards**](docs/IgvfApi.md#awards) | **GET** /awards/@@listing | List items in the Award collection.
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*IgvfApi* | [**biomarkers**](docs/IgvfApi.md#biomarkers) | **GET** /biomarkers/@@listing | List items in the Biomarker collection.
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*IgvfApi* | [**configuration_files**](docs/IgvfApi.md#configuration_files) | **GET** /configuration-files/@@listing | List items in the ConfigurationFile collection.
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*IgvfApi* | [**construct_library_sets**](docs/IgvfApi.md#construct_library_sets) | **GET** /construct-library-sets/@@listing | List items in the ConstructLibrarySet collection.
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*IgvfApi* | [**crispr_modifications**](docs/IgvfApi.md#crispr_modifications) | **GET** /crispr-modifications/@@listing | List items in the CrisprModification collection.
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*IgvfApi* | [**curated_sets**](docs/IgvfApi.md#curated_sets) | **GET** /curated-sets/@@listing | List items in the CuratedSet collection.
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*IgvfApi* | [**degron_modifications**](docs/IgvfApi.md#degron_modifications) | **GET** /degron-modifications/@@listing | List items in the DegronModification collection.
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*IgvfApi* | [**documents**](docs/IgvfApi.md#documents) | **GET** /documents/@@listing | List items in the Document collection.
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*IgvfApi* | [**genes**](docs/IgvfApi.md#genes) | **GET** /genes/@@listing | List items in the Gene collection.
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*IgvfApi* | [**genome_browser_annotation_files**](docs/IgvfApi.md#genome_browser_annotation_files) | **GET** /genome-browser-annotation-files/@@listing | List items in the GenomeBrowserAnnotationFile collection.
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*IgvfApi* | [**human_donors**](docs/IgvfApi.md#human_donors) | **GET** /human-donors/@@listing | List items in the HumanDonor collection.
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*IgvfApi* | [**image_files**](docs/IgvfApi.md#image_files) | **GET** /image-files/@@listing | List items in the ImageFile collection.
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*IgvfApi* | [**images**](docs/IgvfApi.md#images) | **GET** /images/@@listing | List items in the Image collection.
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*IgvfApi* | [**in_vitro_systems**](docs/IgvfApi.md#in_vitro_systems) | **GET** /in-vitro-systems/@@listing | List items in the InVitroSystem collection.
|
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|
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*IgvfApi* | [**index_files**](docs/IgvfApi.md#index_files) | **GET** /index-files/@@listing | List items in the IndexFile collection.
|
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|
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*IgvfApi* | [**institutional_certificates**](docs/IgvfApi.md#institutional_certificates) | **GET** /institutional-certificates/@@listing | List items in the InstitutionalCertificate collection.
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*IgvfApi* | [**labs**](docs/IgvfApi.md#labs) | **GET** /labs/@@listing | List items in the Lab collection.
|
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|
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*IgvfApi* | [**matrix_files**](docs/IgvfApi.md#matrix_files) | **GET** /matrix-files/@@listing | List items in the MatrixFile collection.
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*IgvfApi* | [**measurement_sets**](docs/IgvfApi.md#measurement_sets) | **GET** /measurement-sets/@@listing | List items in the MeasurementSet collection.
|
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|
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*IgvfApi* | [**model_files**](docs/IgvfApi.md#model_files) | **GET** /model-files/@@listing | List items in the ModelFile collection.
|
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|
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*IgvfApi* | [**model_sets**](docs/IgvfApi.md#model_sets) | **GET** /model-sets/@@listing | List items in the ModelSet collection.
|
|
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|
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*IgvfApi* | [**multiplexed_samples**](docs/IgvfApi.md#multiplexed_samples) | **GET** /multiplexed-samples/@@listing | List items in the MultiplexedSample collection.
|
|
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|
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*IgvfApi* | [**open_reading_frames**](docs/IgvfApi.md#open_reading_frames) | **GET** /open-reading-frames/@@listing | List items in the OpenReadingFrame collection.
|
|
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|
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*IgvfApi* | [**pages**](docs/IgvfApi.md#pages) | **GET** /pages/@@listing | List items in the Page collection.
|
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|
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*IgvfApi* | [**phenotype_terms**](docs/IgvfApi.md#phenotype_terms) | **GET** /phenotype-terms/@@listing | List items in the PhenotypeTerm collection.
|
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|
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*IgvfApi* | [**phenotypic_features**](docs/IgvfApi.md#phenotypic_features) | **GET** /phenotypic-features/@@listing | List items in the PhenotypicFeature collection.
|
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|
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*IgvfApi* | [**platform_terms**](docs/IgvfApi.md#platform_terms) | **GET** /platform-terms/@@listing | List items in the PlatformTerm collection.
|
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|
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*IgvfApi* | [**prediction_sets**](docs/IgvfApi.md#prediction_sets) | **GET** /prediction-sets/@@listing | List items in the PredictionSet collection.
|
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*IgvfApi* | [**primary_cells**](docs/IgvfApi.md#primary_cells) | **GET** /primary-cells/@@listing | List items in the PrimaryCell collection.
|
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151
|
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*IgvfApi* | [**publications**](docs/IgvfApi.md#publications) | **GET** /publications/@@listing | List items in the Publication collection.
|
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|
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*IgvfApi* | [**reference_files**](docs/IgvfApi.md#reference_files) | **GET** /reference-files/@@listing | List items in the ReferenceFile collection.
|
|
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|
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*IgvfApi* | [**rodent_donors**](docs/IgvfApi.md#rodent_donors) | **GET** /rodent-donors/@@listing | List items in the RodentDonor collection.
|
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|
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*IgvfApi* | [**sample_terms**](docs/IgvfApi.md#sample_terms) | **GET** /sample-terms/@@listing | List items in the SampleTerm collection.
|
|
155
|
+
*IgvfApi* | [**sequence_files**](docs/IgvfApi.md#sequence_files) | **GET** /sequence-files/@@listing | List items in the SequenceFile collection.
|
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156
|
+
*IgvfApi* | [**signal_files**](docs/IgvfApi.md#signal_files) | **GET** /signal-files/@@listing | List items in the SignalFile collection.
|
|
157
|
+
*IgvfApi* | [**software**](docs/IgvfApi.md#software) | **GET** /software/@@listing | List items in the Software collection.
|
|
158
|
+
*IgvfApi* | [**software_versions**](docs/IgvfApi.md#software_versions) | **GET** /software-versions/@@listing | List items in the SoftwareVersion collection.
|
|
159
|
+
*IgvfApi* | [**sources**](docs/IgvfApi.md#sources) | **GET** /sources/@@listing | List items in the Source collection.
|
|
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|
+
*IgvfApi* | [**tabular_files**](docs/IgvfApi.md#tabular_files) | **GET** /tabular-files/@@listing | List items in the TabularFile collection.
|
|
161
|
+
*IgvfApi* | [**technical_samples**](docs/IgvfApi.md#technical_samples) | **GET** /technical-samples/@@listing | List items in the TechnicalSample collection.
|
|
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|
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*IgvfApi* | [**tissues**](docs/IgvfApi.md#tissues) | **GET** /tissues/@@listing | List items in the Tissue collection.
|
|
163
|
+
*IgvfApi* | [**treatments**](docs/IgvfApi.md#treatments) | **GET** /treatments/@@listing | List items in the Treatment collection.
|
|
164
|
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*IgvfApi* | [**users**](docs/IgvfApi.md#users) | **GET** /users/@@listing | List items in the User collection.
|
|
165
|
+
*IgvfApi* | [**whole_organisms**](docs/IgvfApi.md#whole_organisms) | **GET** /whole-organisms/@@listing | List items in the WholeOrganism collection.
|
|
166
|
+
*IgvfApi* | [**workflows**](docs/IgvfApi.md#workflows) | **GET** /workflows/@@listing | List items in the Workflow collection.
|
|
167
|
+
|
|
168
|
+
## Documentation for Models
|
|
169
|
+
|
|
170
|
+
- [AccessKey](docs/AccessKey.md)
|
|
171
|
+
- [AccessKeyResults](docs/AccessKeyResults.md)
|
|
172
|
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- [AlignmentFile](docs/AlignmentFile.md)
|
|
173
|
+
- [AlignmentFileResults](docs/AlignmentFileResults.md)
|
|
174
|
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- [AnalysisSet](docs/AnalysisSet.md)
|
|
175
|
+
- [AnalysisSetResults](docs/AnalysisSetResults.md)
|
|
176
|
+
- [AnalysisStep](docs/AnalysisStep.md)
|
|
177
|
+
- [AnalysisStepResults](docs/AnalysisStepResults.md)
|
|
178
|
+
- [AnalysisStepVersion](docs/AnalysisStepVersion.md)
|
|
179
|
+
- [AnalysisStepVersionResults](docs/AnalysisStepVersionResults.md)
|
|
180
|
+
- [AssayTerm](docs/AssayTerm.md)
|
|
181
|
+
- [AssayTermResults](docs/AssayTermResults.md)
|
|
182
|
+
- [Attachment](docs/Attachment.md)
|
|
183
|
+
- [Attachment1](docs/Attachment1.md)
|
|
184
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+
- [AuxiliarySet](docs/AuxiliarySet.md)
|
|
185
|
+
- [AuxiliarySetResults](docs/AuxiliarySetResults.md)
|
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186
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+
- [Award](docs/Award.md)
|
|
187
|
+
- [AwardResults](docs/AwardResults.md)
|
|
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|
+
- [Biomarker](docs/Biomarker.md)
|
|
189
|
+
- [BiomarkerResults](docs/BiomarkerResults.md)
|
|
190
|
+
- [ConfigurationFile](docs/ConfigurationFile.md)
|
|
191
|
+
- [ConfigurationFileResults](docs/ConfigurationFileResults.md)
|
|
192
|
+
- [ConstructLibrarySet](docs/ConstructLibrarySet.md)
|
|
193
|
+
- [ConstructLibrarySetResults](docs/ConstructLibrarySetResults.md)
|
|
194
|
+
- [CrisprModification](docs/CrisprModification.md)
|
|
195
|
+
- [CrisprModificationResults](docs/CrisprModificationResults.md)
|
|
196
|
+
- [CuratedSet](docs/CuratedSet.md)
|
|
197
|
+
- [CuratedSetResults](docs/CuratedSetResults.md)
|
|
198
|
+
- [DegronModification](docs/DegronModification.md)
|
|
199
|
+
- [DegronModificationResults](docs/DegronModificationResults.md)
|
|
200
|
+
- [Document](docs/Document.md)
|
|
201
|
+
- [DocumentResults](docs/DocumentResults.md)
|
|
202
|
+
- [Gene](docs/Gene.md)
|
|
203
|
+
- [GeneLocation](docs/GeneLocation.md)
|
|
204
|
+
- [GeneLocation1](docs/GeneLocation1.md)
|
|
205
|
+
- [GeneResults](docs/GeneResults.md)
|
|
206
|
+
- [GenomeBrowserAnnotationFile](docs/GenomeBrowserAnnotationFile.md)
|
|
207
|
+
- [GenomeBrowserAnnotationFileResults](docs/GenomeBrowserAnnotationFileResults.md)
|
|
208
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- [HumanDonor](docs/HumanDonor.md)
|
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209
|
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- [HumanDonorResults](docs/HumanDonorResults.md)
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- [Image](docs/Image.md)
|
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- [ImageFile](docs/ImageFile.md)
|
|
212
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- [ImageFileResults](docs/ImageFileResults.md)
|
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213
|
+
- [ImageResults](docs/ImageResults.md)
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214
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- [InVitroSystem](docs/InVitroSystem.md)
|
|
215
|
+
- [InVitroSystemResults](docs/InVitroSystemResults.md)
|
|
216
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+
- [IndexFile](docs/IndexFile.md)
|
|
217
|
+
- [IndexFileResults](docs/IndexFileResults.md)
|
|
218
|
+
- [InstitutionalCertificate](docs/InstitutionalCertificate.md)
|
|
219
|
+
- [InstitutionalCertificateResults](docs/InstitutionalCertificateResults.md)
|
|
220
|
+
- [Item](docs/Item.md)
|
|
221
|
+
- [ItemType](docs/ItemType.md)
|
|
222
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- [Lab](docs/Lab.md)
|
|
223
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- [LabResults](docs/LabResults.md)
|
|
224
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+
- [Limit](docs/Limit.md)
|
|
225
|
+
- [Locus](docs/Locus.md)
|
|
226
|
+
- [Locus1](docs/Locus1.md)
|
|
227
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+
- [MatrixFile](docs/MatrixFile.md)
|
|
228
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+
- [MatrixFileResults](docs/MatrixFileResults.md)
|
|
229
|
+
- [MeasurementSet](docs/MeasurementSet.md)
|
|
230
|
+
- [MeasurementSetResults](docs/MeasurementSetResults.md)
|
|
231
|
+
- [ModelFile](docs/ModelFile.md)
|
|
232
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+
- [ModelFileResults](docs/ModelFileResults.md)
|
|
233
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+
- [ModelSet](docs/ModelSet.md)
|
|
234
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+
- [ModelSetResults](docs/ModelSetResults.md)
|
|
235
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+
- [MultiplexedSample](docs/MultiplexedSample.md)
|
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236
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- [MultiplexedSampleResults](docs/MultiplexedSampleResults.md)
|
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237
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- [NoResultsResponse](docs/NoResultsResponse.md)
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|
238
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- [NoResultsResponseColumnsValue](docs/NoResultsResponseColumnsValue.md)
|
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- [NoResultsResponseFacetGroupsInner](docs/NoResultsResponseFacetGroupsInner.md)
|
|
240
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+
- [NoResultsResponseFacetsInner](docs/NoResultsResponseFacetsInner.md)
|
|
241
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+
- [NoResultsResponseFacetsInnerTermsInner](docs/NoResultsResponseFacetsInnerTermsInner.md)
|
|
242
|
+
- [NoResultsResponseFiltersInner](docs/NoResultsResponseFiltersInner.md)
|
|
243
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+
- [NoResultsResponseSortValue](docs/NoResultsResponseSortValue.md)
|
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244
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+
- [OpenReadingFrame](docs/OpenReadingFrame.md)
|
|
245
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+
- [OpenReadingFrameResults](docs/OpenReadingFrameResults.md)
|
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246
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- [Page](docs/Page.md)
|
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247
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+
- [PageLayout](docs/PageLayout.md)
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248
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- [PageLayoutComponents](docs/PageLayoutComponents.md)
|
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249
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+
- [PageResults](docs/PageResults.md)
|
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250
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+
- [PhenotypeTerm](docs/PhenotypeTerm.md)
|
|
251
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+
- [PhenotypeTermResults](docs/PhenotypeTermResults.md)
|
|
252
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+
- [PhenotypicFeature](docs/PhenotypicFeature.md)
|
|
253
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+
- [PhenotypicFeatureResults](docs/PhenotypicFeatureResults.md)
|
|
254
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- [PlatformTerm](docs/PlatformTerm.md)
|
|
255
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+
- [PlatformTermResults](docs/PlatformTermResults.md)
|
|
256
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+
- [PredictionSet](docs/PredictionSet.md)
|
|
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+
- [PredictionSetResults](docs/PredictionSetResults.md)
|
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258
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- [PrimaryCell](docs/PrimaryCell.md)
|
|
259
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- [PrimaryCellResults](docs/PrimaryCellResults.md)
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- [Publication](docs/Publication.md)
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- [PublicationResults](docs/PublicationResults.md)
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- [ReferenceFile](docs/ReferenceFile.md)
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- [ReferenceFileResults](docs/ReferenceFileResults.md)
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264
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- [RelatedDonor](docs/RelatedDonor.md)
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- [RodentDonor](docs/RodentDonor.md)
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266
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- [RodentDonorResults](docs/RodentDonorResults.md)
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- [SampleTerm](docs/SampleTerm.md)
|
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268
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- [SampleTermResults](docs/SampleTermResults.md)
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- [SearchFacet](docs/SearchFacet.md)
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- [SearchResultItem](docs/SearchResultItem.md)
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- [SearchResults](docs/SearchResults.md)
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- [SequenceFile](docs/SequenceFile.md)
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- [SequenceFileResults](docs/SequenceFileResults.md)
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- [SignalFile](docs/SignalFile.md)
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- [SignalFileResults](docs/SignalFileResults.md)
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- [Software](docs/Software.md)
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- [SoftwareResults](docs/SoftwareResults.md)
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278
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- [SoftwareVersion](docs/SoftwareVersion.md)
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279
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- [SoftwareVersionResults](docs/SoftwareVersionResults.md)
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- [Source](docs/Source.md)
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- [SourceResults](docs/SourceResults.md)
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- [TabularFile](docs/TabularFile.md)
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- [TabularFileResults](docs/TabularFileResults.md)
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284
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- [TechnicalSample](docs/TechnicalSample.md)
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- [TechnicalSampleResults](docs/TechnicalSampleResults.md)
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- [Tile](docs/Tile.md)
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- [Tissue](docs/Tissue.md)
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- [TissueResults](docs/TissueResults.md)
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- [Treatment](docs/Treatment.md)
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- [TreatmentResults](docs/TreatmentResults.md)
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- [User](docs/User.md)
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- [UserResults](docs/UserResults.md)
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- [WholeOrganism](docs/WholeOrganism.md)
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- [WholeOrganismResults](docs/WholeOrganismResults.md)
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- [Workflow](docs/Workflow.md)
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- [WorkflowResults](docs/WorkflowResults.md)
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IGVF Project API
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Do not edit the class manually.
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""" # noqa: E501
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__version__ = "62.0.0"
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# import apis into sdk package
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from igvf_client.api.igvf_api import IgvfApi
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# import ApiClient
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from igvf_client.api_response import ApiResponse
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from igvf_client.api_client import ApiClient
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from igvf_client.configuration import Configuration
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from igvf_client.exceptions import OpenApiException
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from igvf_client.exceptions import ApiTypeError
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from igvf_client.exceptions import ApiValueError
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from igvf_client.exceptions import ApiKeyError
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from igvf_client.exceptions import ApiAttributeError
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from igvf_client.exceptions import ApiException
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# import models into sdk package
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from igvf_client.models.access_key import AccessKey
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from igvf_client.models.access_key_results import AccessKeyResults
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from igvf_client.models.alignment_file import AlignmentFile
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from igvf_client.models.alignment_file_results import AlignmentFileResults
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from igvf_client.models.analysis_set import AnalysisSet
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from igvf_client.models.analysis_set_results import AnalysisSetResults
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from igvf_client.models.analysis_step import AnalysisStep
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from igvf_client.models.analysis_step_results import AnalysisStepResults
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from igvf_client.models.analysis_step_version import AnalysisStepVersion
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from igvf_client.models.analysis_step_version_results import AnalysisStepVersionResults
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from igvf_client.models.assay_term import AssayTerm
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from igvf_client.models.assay_term_results import AssayTermResults
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from igvf_client.models.attachment import Attachment
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from igvf_client.models.attachment1 import Attachment1
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from igvf_client.models.auxiliary_set import AuxiliarySet
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from igvf_client.models.auxiliary_set_results import AuxiliarySetResults
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from igvf_client.models.award import Award
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from igvf_client.models.award_results import AwardResults
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from igvf_client.models.biomarker import Biomarker
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from igvf_client.models.biomarker_results import BiomarkerResults
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from igvf_client.models.configuration_file import ConfigurationFile
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from igvf_client.models.configuration_file_results import ConfigurationFileResults
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from igvf_client.models.construct_library_set import ConstructLibrarySet
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from igvf_client.models.construct_library_set_results import ConstructLibrarySetResults
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from igvf_client.models.crispr_modification import CrisprModification
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from igvf_client.models.crispr_modification_results import CrisprModificationResults
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from igvf_client.models.curated_set import CuratedSet
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from igvf_client.models.curated_set_results import CuratedSetResults
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from igvf_client.models.degron_modification import DegronModification
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from igvf_client.models.degron_modification_results import DegronModificationResults
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from igvf_client.models.document import Document
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from igvf_client.models.document_results import DocumentResults
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from igvf_client.models.gene import Gene
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from igvf_client.models.gene_location import GeneLocation
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from igvf_client.models.gene_location1 import GeneLocation1
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from igvf_client.models.gene_results import GeneResults
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from igvf_client.models.genome_browser_annotation_file import GenomeBrowserAnnotationFile
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from igvf_client.models.genome_browser_annotation_file_results import GenomeBrowserAnnotationFileResults
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from igvf_client.models.human_donor import HumanDonor
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from igvf_client.models.human_donor_results import HumanDonorResults
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from igvf_client.models.image import Image
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from igvf_client.models.image_file import ImageFile
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from igvf_client.models.image_file_results import ImageFileResults
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from igvf_client.models.image_results import ImageResults
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from igvf_client.models.in_vitro_system import InVitroSystem
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from igvf_client.models.in_vitro_system_results import InVitroSystemResults
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from igvf_client.models.index_file import IndexFile
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from igvf_client.models.index_file_results import IndexFileResults
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from igvf_client.models.institutional_certificate import InstitutionalCertificate
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from igvf_client.models.institutional_certificate_results import InstitutionalCertificateResults
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from igvf_client.models.item import Item
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from igvf_client.models.item_type import ItemType
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from igvf_client.models.lab import Lab
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from igvf_client.models.lab_results import LabResults
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from igvf_client.models.limit import Limit
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from igvf_client.models.locus import Locus
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from igvf_client.models.locus1 import Locus1
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from igvf_client.models.matrix_file import MatrixFile
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from igvf_client.models.matrix_file_results import MatrixFileResults
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from igvf_client.models.measurement_set import MeasurementSet
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from igvf_client.models.measurement_set_results import MeasurementSetResults
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from igvf_client.models.model_file import ModelFile
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from igvf_client.models.model_file_results import ModelFileResults
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from igvf_client.models.model_set import ModelSet
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from igvf_client.models.model_set_results import ModelSetResults
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from igvf_client.models.multiplexed_sample import MultiplexedSample
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from igvf_client.models.multiplexed_sample_results import MultiplexedSampleResults
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from igvf_client.models.no_results_response import NoResultsResponse
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from igvf_client.models.no_results_response_columns_value import NoResultsResponseColumnsValue
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from igvf_client.models.no_results_response_facet_groups_inner import NoResultsResponseFacetGroupsInner
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from igvf_client.models.no_results_response_facets_inner import NoResultsResponseFacetsInner
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from igvf_client.models.no_results_response_facets_inner_terms_inner import NoResultsResponseFacetsInnerTermsInner
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from igvf_client.models.no_results_response_filters_inner import NoResultsResponseFiltersInner
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from igvf_client.models.no_results_response_sort_value import NoResultsResponseSortValue
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from igvf_client.models.open_reading_frame import OpenReadingFrame
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from igvf_client.models.open_reading_frame_results import OpenReadingFrameResults
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from igvf_client.models.page import Page
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from igvf_client.models.page_layout import PageLayout
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from igvf_client.models.page_layout_components import PageLayoutComponents
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from igvf_client.models.page_results import PageResults
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from igvf_client.models.phenotype_term import PhenotypeTerm
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from igvf_client.models.phenotype_term_results import PhenotypeTermResults
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from igvf_client.models.phenotypic_feature import PhenotypicFeature
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from igvf_client.models.phenotypic_feature_results import PhenotypicFeatureResults
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from igvf_client.models.platform_term import PlatformTerm
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from igvf_client.models.platform_term_results import PlatformTermResults
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from igvf_client.models.prediction_set import PredictionSet
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from igvf_client.models.prediction_set_results import PredictionSetResults
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from igvf_client.models.primary_cell import PrimaryCell
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from igvf_client.models.primary_cell_results import PrimaryCellResults
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from igvf_client.models.publication import Publication
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from igvf_client.models.publication_results import PublicationResults
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from igvf_client.models.reference_file import ReferenceFile
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from igvf_client.models.reference_file_results import ReferenceFileResults
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from igvf_client.models.related_donor import RelatedDonor
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from igvf_client.models.rodent_donor import RodentDonor
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from igvf_client.models.rodent_donor_results import RodentDonorResults
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from igvf_client.models.sample_term import SampleTerm
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from igvf_client.models.sample_term_results import SampleTermResults
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from igvf_client.models.search_facet import SearchFacet
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from igvf_client.models.search_result_item import SearchResultItem
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from igvf_client.models.search_results import SearchResults
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from igvf_client.models.sequence_file import SequenceFile
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from igvf_client.models.sequence_file_results import SequenceFileResults
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from igvf_client.models.signal_file import SignalFile
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from igvf_client.models.signal_file_results import SignalFileResults
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from igvf_client.models.software import Software
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from igvf_client.models.software_results import SoftwareResults
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from igvf_client.models.software_version import SoftwareVersion
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from igvf_client.models.software_version_results import SoftwareVersionResults
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from igvf_client.models.source import Source
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from igvf_client.models.source_results import SourceResults
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from igvf_client.models.tabular_file import TabularFile
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from igvf_client.models.tabular_file_results import TabularFileResults
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from igvf_client.models.technical_sample import TechnicalSample
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from igvf_client.models.technical_sample_results import TechnicalSampleResults
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from igvf_client.models.tile import Tile
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from igvf_client.models.tissue import Tissue
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from igvf_client.models.tissue_results import TissueResults
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from igvf_client.models.treatment import Treatment
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from igvf_client.models.treatment_results import TreatmentResults
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from igvf_client.models.user import User
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from igvf_client.models.user_results import UserResults
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from igvf_client.models.whole_organism import WholeOrganism
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from igvf_client.models.whole_organism_results import WholeOrganismResults
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from igvf_client.models.workflow import Workflow
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from igvf_client.models.workflow_results import WorkflowResults
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