igvf-client 57.0.4__tar.gz

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Files changed (148) hide show
  1. igvf_client-57.0.4/LICENSE +21 -0
  2. igvf_client-57.0.4/PKG-INFO +17 -0
  3. igvf_client-57.0.4/README.md +293 -0
  4. igvf_client-57.0.4/igvf_client/__init__.py +158 -0
  5. igvf_client-57.0.4/igvf_client/api/__init__.py +5 -0
  6. igvf_client-57.0.4/igvf_client/api/igvf_api.py +64681 -0
  7. igvf_client-57.0.4/igvf_client/api_client.py +772 -0
  8. igvf_client-57.0.4/igvf_client/api_response.py +21 -0
  9. igvf_client-57.0.4/igvf_client/configuration.py +461 -0
  10. igvf_client-57.0.4/igvf_client/exceptions.py +199 -0
  11. igvf_client-57.0.4/igvf_client/models/__init__.py +141 -0
  12. igvf_client-57.0.4/igvf_client/models/access_key.py +166 -0
  13. igvf_client-57.0.4/igvf_client/models/access_key_results.py +111 -0
  14. igvf_client-57.0.4/igvf_client/models/alignment_file.py +319 -0
  15. igvf_client-57.0.4/igvf_client/models/alignment_file_results.py +111 -0
  16. igvf_client-57.0.4/igvf_client/models/analysis_set.py +253 -0
  17. igvf_client-57.0.4/igvf_client/models/analysis_set_results.py +111 -0
  18. igvf_client-57.0.4/igvf_client/models/analysis_step.py +237 -0
  19. igvf_client-57.0.4/igvf_client/models/analysis_step_results.py +111 -0
  20. igvf_client-57.0.4/igvf_client/models/analysis_step_version.py +170 -0
  21. igvf_client-57.0.4/igvf_client/models/analysis_step_version_results.py +111 -0
  22. igvf_client-57.0.4/igvf_client/models/assay_term.py +217 -0
  23. igvf_client-57.0.4/igvf_client/models/assay_term_results.py +111 -0
  24. igvf_client-57.0.4/igvf_client/models/attachment.py +110 -0
  25. igvf_client-57.0.4/igvf_client/models/attachment1.py +110 -0
  26. igvf_client-57.0.4/igvf_client/models/auxiliary_set.py +233 -0
  27. igvf_client-57.0.4/igvf_client/models/auxiliary_set_results.py +111 -0
  28. igvf_client-57.0.4/igvf_client/models/award.py +230 -0
  29. igvf_client-57.0.4/igvf_client/models/award_results.py +111 -0
  30. igvf_client-57.0.4/igvf_client/models/biomarker.py +200 -0
  31. igvf_client-57.0.4/igvf_client/models/biomarker_results.py +111 -0
  32. igvf_client-57.0.4/igvf_client/models/configuration_file.py +283 -0
  33. igvf_client-57.0.4/igvf_client/models/configuration_file_results.py +111 -0
  34. igvf_client-57.0.4/igvf_client/models/construct_library_set.py +375 -0
  35. igvf_client-57.0.4/igvf_client/models/construct_library_set_results.py +111 -0
  36. igvf_client-57.0.4/igvf_client/models/crispr_modification.py +262 -0
  37. igvf_client-57.0.4/igvf_client/models/crispr_modification_results.py +111 -0
  38. igvf_client-57.0.4/igvf_client/models/curated_set.py +245 -0
  39. igvf_client-57.0.4/igvf_client/models/curated_set_results.py +111 -0
  40. igvf_client-57.0.4/igvf_client/models/degron_modification.py +238 -0
  41. igvf_client-57.0.4/igvf_client/models/degron_modification_results.py +111 -0
  42. igvf_client-57.0.4/igvf_client/models/document.py +211 -0
  43. igvf_client-57.0.4/igvf_client/models/document_results.py +111 -0
  44. igvf_client-57.0.4/igvf_client/models/gene.py +245 -0
  45. igvf_client-57.0.4/igvf_client/models/gene_location.py +121 -0
  46. igvf_client-57.0.4/igvf_client/models/gene_location1.py +108 -0
  47. igvf_client-57.0.4/igvf_client/models/gene_results.py +111 -0
  48. igvf_client-57.0.4/igvf_client/models/genome_browser_annotation_file.py +319 -0
  49. igvf_client-57.0.4/igvf_client/models/genome_browser_annotation_file_results.py +111 -0
  50. igvf_client-57.0.4/igvf_client/models/human_donor.py +269 -0
  51. igvf_client-57.0.4/igvf_client/models/human_donor_results.py +111 -0
  52. igvf_client-57.0.4/igvf_client/models/image.py +187 -0
  53. igvf_client-57.0.4/igvf_client/models/image_file.py +281 -0
  54. igvf_client-57.0.4/igvf_client/models/image_file_results.py +111 -0
  55. igvf_client-57.0.4/igvf_client/models/image_results.py +111 -0
  56. igvf_client-57.0.4/igvf_client/models/in_vitro_system.py +449 -0
  57. igvf_client-57.0.4/igvf_client/models/in_vitro_system_results.py +111 -0
  58. igvf_client-57.0.4/igvf_client/models/institutional_certificate.py +209 -0
  59. igvf_client-57.0.4/igvf_client/models/institutional_certificate_results.py +111 -0
  60. igvf_client-57.0.4/igvf_client/models/item.py +1106 -0
  61. igvf_client-57.0.4/igvf_client/models/item_type.py +86 -0
  62. igvf_client-57.0.4/igvf_client/models/lab.py +192 -0
  63. igvf_client-57.0.4/igvf_client/models/lab_results.py +111 -0
  64. igvf_client-57.0.4/igvf_client/models/limit.py +158 -0
  65. igvf_client-57.0.4/igvf_client/models/locus.py +121 -0
  66. igvf_client-57.0.4/igvf_client/models/locus1.py +108 -0
  67. igvf_client-57.0.4/igvf_client/models/matrix_file.py +310 -0
  68. igvf_client-57.0.4/igvf_client/models/matrix_file_results.py +111 -0
  69. igvf_client-57.0.4/igvf_client/models/measurement_set.py +292 -0
  70. igvf_client-57.0.4/igvf_client/models/measurement_set_results.py +111 -0
  71. igvf_client-57.0.4/igvf_client/models/model_file.py +289 -0
  72. igvf_client-57.0.4/igvf_client/models/model_file_results.py +111 -0
  73. igvf_client-57.0.4/igvf_client/models/model_set.py +278 -0
  74. igvf_client-57.0.4/igvf_client/models/model_set_results.py +111 -0
  75. igvf_client-57.0.4/igvf_client/models/multiplexed_sample.py +324 -0
  76. igvf_client-57.0.4/igvf_client/models/multiplexed_sample_results.py +111 -0
  77. igvf_client-57.0.4/igvf_client/models/no_results_response.py +161 -0
  78. igvf_client-57.0.4/igvf_client/models/no_results_response_columns_value.py +87 -0
  79. igvf_client-57.0.4/igvf_client/models/no_results_response_facet_groups_inner.py +91 -0
  80. igvf_client-57.0.4/igvf_client/models/no_results_response_facets_inner.py +107 -0
  81. igvf_client-57.0.4/igvf_client/models/no_results_response_facets_inner_terms_inner.py +89 -0
  82. igvf_client-57.0.4/igvf_client/models/no_results_response_filters_inner.py +91 -0
  83. igvf_client-57.0.4/igvf_client/models/no_results_response_sort_value.py +89 -0
  84. igvf_client-57.0.4/igvf_client/models/open_reading_frame.py +200 -0
  85. igvf_client-57.0.4/igvf_client/models/open_reading_frame_results.py +111 -0
  86. igvf_client-57.0.4/igvf_client/models/output_content_type.py +272 -0
  87. igvf_client-57.0.4/igvf_client/models/output_content_type_any_of.py +158 -0
  88. igvf_client-57.0.4/igvf_client/models/page.py +203 -0
  89. igvf_client-57.0.4/igvf_client/models/page_layout.py +95 -0
  90. igvf_client-57.0.4/igvf_client/models/page_layout_components.py +93 -0
  91. igvf_client-57.0.4/igvf_client/models/page_results.py +111 -0
  92. igvf_client-57.0.4/igvf_client/models/phenotype_term.py +198 -0
  93. igvf_client-57.0.4/igvf_client/models/phenotype_term_results.py +111 -0
  94. igvf_client-57.0.4/igvf_client/models/phenotypic_feature.py +196 -0
  95. igvf_client-57.0.4/igvf_client/models/phenotypic_feature_results.py +111 -0
  96. igvf_client-57.0.4/igvf_client/models/platform_term.py +223 -0
  97. igvf_client-57.0.4/igvf_client/models/platform_term_results.py +111 -0
  98. igvf_client-57.0.4/igvf_client/models/prediction_set.py +274 -0
  99. igvf_client-57.0.4/igvf_client/models/prediction_set_results.py +111 -0
  100. igvf_client-57.0.4/igvf_client/models/primary_cell.py +402 -0
  101. igvf_client-57.0.4/igvf_client/models/primary_cell_results.py +111 -0
  102. igvf_client-57.0.4/igvf_client/models/publication.py +232 -0
  103. igvf_client-57.0.4/igvf_client/models/publication_results.py +111 -0
  104. igvf_client-57.0.4/igvf_client/models/reference_file.py +327 -0
  105. igvf_client-57.0.4/igvf_client/models/reference_file_results.py +111 -0
  106. igvf_client-57.0.4/igvf_client/models/related_donor.py +96 -0
  107. igvf_client-57.0.4/igvf_client/models/rodent_donor.py +277 -0
  108. igvf_client-57.0.4/igvf_client/models/rodent_donor_results.py +111 -0
  109. igvf_client-57.0.4/igvf_client/models/sample_term.py +208 -0
  110. igvf_client-57.0.4/igvf_client/models/sample_term_results.py +111 -0
  111. igvf_client-57.0.4/igvf_client/models/search_facet.py +91 -0
  112. igvf_client-57.0.4/igvf_client/models/search_result_item.py +1106 -0
  113. igvf_client-57.0.4/igvf_client/models/search_results.py +111 -0
  114. igvf_client-57.0.4/igvf_client/models/sequence_file.py +356 -0
  115. igvf_client-57.0.4/igvf_client/models/sequence_file_results.py +111 -0
  116. igvf_client-57.0.4/igvf_client/models/signal_file.py +339 -0
  117. igvf_client-57.0.4/igvf_client/models/signal_file_results.py +111 -0
  118. igvf_client-57.0.4/igvf_client/models/software.py +209 -0
  119. igvf_client-57.0.4/igvf_client/models/software_results.py +111 -0
  120. igvf_client-57.0.4/igvf_client/models/software_version.py +188 -0
  121. igvf_client-57.0.4/igvf_client/models/software_version_results.py +111 -0
  122. igvf_client-57.0.4/igvf_client/models/source.py +188 -0
  123. igvf_client-57.0.4/igvf_client/models/source_results.py +111 -0
  124. igvf_client-57.0.4/igvf_client/models/tabular_file.py +325 -0
  125. igvf_client-57.0.4/igvf_client/models/tabular_file_results.py +111 -0
  126. igvf_client-57.0.4/igvf_client/models/technical_sample.py +321 -0
  127. igvf_client-57.0.4/igvf_client/models/technical_sample_results.py +111 -0
  128. igvf_client-57.0.4/igvf_client/models/tile.py +102 -0
  129. igvf_client-57.0.4/igvf_client/models/tissue.py +415 -0
  130. igvf_client-57.0.4/igvf_client/models/tissue_results.py +111 -0
  131. igvf_client-57.0.4/igvf_client/models/treatment.py +294 -0
  132. igvf_client-57.0.4/igvf_client/models/treatment_results.py +111 -0
  133. igvf_client-57.0.4/igvf_client/models/user.py +220 -0
  134. igvf_client-57.0.4/igvf_client/models/user_results.py +111 -0
  135. igvf_client-57.0.4/igvf_client/models/whole_organism.py +387 -0
  136. igvf_client-57.0.4/igvf_client/models/whole_organism_results.py +111 -0
  137. igvf_client-57.0.4/igvf_client/models/workflow.py +233 -0
  138. igvf_client-57.0.4/igvf_client/models/workflow_results.py +111 -0
  139. igvf_client-57.0.4/igvf_client/py.typed +0 -0
  140. igvf_client-57.0.4/igvf_client/rest.py +257 -0
  141. igvf_client-57.0.4/igvf_client.egg-info/PKG-INFO +17 -0
  142. igvf_client-57.0.4/igvf_client.egg-info/SOURCES.txt +147 -0
  143. igvf_client-57.0.4/igvf_client.egg-info/dependency_links.txt +1 -0
  144. igvf_client-57.0.4/igvf_client.egg-info/requires.txt +4 -0
  145. igvf_client-57.0.4/igvf_client.egg-info/top_level.txt +1 -0
  146. igvf_client-57.0.4/pyproject.toml +71 -0
  147. igvf_client-57.0.4/setup.cfg +7 -0
  148. igvf_client-57.0.4/setup.py +49 -0
@@ -0,0 +1,21 @@
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+ MIT License
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+
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+ Copyright (c) 2024 IGVF-DACC
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+
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+ Permission is hereby granted, free of charge, to any person obtaining a copy
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+ of this software and associated documentation files (the "Software"), to deal
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+ in the Software without restriction, including without limitation the rights
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+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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+ copies of the Software, and to permit persons to whom the Software is
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+ furnished to do so, subject to the following conditions:
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+
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+ The above copyright notice and this permission notice shall be included in all
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+ copies or substantial portions of the Software.
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+
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+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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+ SOFTWARE.
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+ Metadata-Version: 2.1
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+ Name: igvf-client
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+ Version: 57.0.4
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+ Summary: IGVF Project API
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+ Home-page: https://github.com/iGVF-DACC/igvf-python-client
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+ Author: IGVF DACC
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+ Author-email: encode-help@lists.stanford.edu
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+ Keywords: OpenAPI,OpenAPI-Generator,IGVF Project API
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+ Description-Content-Type: text/markdown
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+ License-File: LICENSE
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+ Requires-Dist: urllib3<2.1.0,>=1.25.3
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+ Requires-Dist: python-dateutil
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+ Requires-Dist: pydantic>=2
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+ Requires-Dist: typing-extensions>=4.7.1
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+
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+ Autogenerated Python client for the IGVF API
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+
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+ # igvf-client
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+
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+ The Python client is autogenerated based on this [IGVF OpenAPI specification](https://igvf-dacc.github.io/igvf-client-openapi-spec/), which exposes `search`, `collection`, and other read endpoints from the [IGVF Data Portal](https://data.igvf.org).
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+
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+ *Note while the API endpoints are relatively stable, the underlying data model is still evolving, and changing fields/types can cause breaking changes. The latest version of the client reflects the latest version of the schema used by the API.*
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+
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+ - API version: 57.0.4
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+ - Package version: 57.0.4
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+ - Generator version: 7.7.0
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+ - Build package: org.openapitools.codegen.languages.PythonClientCodegen
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+
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+ ## Requirements.
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+
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+ Python 3.9+
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+
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+ ## Installation & Usage
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+
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+ Pip install:
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+
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+ ```sh
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+ $ pip install igvf-client
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+ ```
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+
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+ Or clone the repo and and install:
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+ ```sh
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+ $ git clone https://github.com/IGVF-DACC/igvf-python-client
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+ $ cd igvf-python-client
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+ $ pip install -e .
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+ ```
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+
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+ Then import the package:
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+ ```python
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+ $ python
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+ >>> import igvf_client
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+ ```
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+
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+ ## Examples
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+
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+ ```python
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+ from igvf_client import IgvfApi
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+
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+ api = IgvfApi()
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+
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+ # Search for Software that matches query `abc`.
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+ r = api.search(query='abc', type=['Software'])
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+
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+ # Print total number of results and list of results in `@graph`.
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+ print(r.total)
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+ print(r.graph)
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+
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+ # Pull first item, unwrap to underlying Software item with `actual_instance`.
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+ software_item = r.graph[0].actual_instance
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+
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+ # Print Software item and specific fields.
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+ print(software_item)
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+ print(software_item.id)
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+ print(software_item.description)
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+
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+ # Get the Lab item based on the lab @id in the Software item.
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+ lab = api.get_by_id(software_item.lab)
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+
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+ # Print lab and specific field.
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+ print(lab)
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+ print(lab.title)
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+ ```
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+
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+ ### Optional authorization
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+
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+ You can make authenticated requests (e.g. to view unreleased data) if you pass the access key/secret key associated with your user when instantiating the client.
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+ ```python
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+ from igvf_client import Configuration
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+ from igvf_client import ApiClient
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+ from igvf_client import IgvfApi
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+
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+ config = Configuration(
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+ access_key = os.environ["IGVF_ACCESS_KEY"],
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+ secret_access_key = os.environ["IGVF_SECRET_ACCESS_KEY"]
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+ )
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+
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+ client = ApiClient(config)
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+
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+ api = IgvfApi(client)
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+
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+ api.sequence_files(status=['in progress']).total # 8878
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+ ```
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+
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+ ### More examples
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+
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+ See other examples in [examples.ipynb](examples.ipynb) and [test_endpoints.py](test/e2e/test_endpoints.py)
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+
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+ Refer to the documentation for a full specification of endpoint inputs and outputs and model fields.
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+
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+ ## Documentation for API Endpoints
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+
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+ ### **General Endpoints**
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+
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+ All URIs are relative to *https://api.data.igvf.org*
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+
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+ Class | Method | HTTP request | Description
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+ ------------ | ------------- | ------------- | -------------
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+ *IgvfApi* | [**get_by_id**](docs/IgvfApi.md#get_by_id) | **GET** /{resource_id} | Get item information
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+ *IgvfApi* | [**search**](docs/IgvfApi.md#search) | **GET** /search | Search for items on the IGVF Data Portal.
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+ *IgvfApi* | [**schemas**](docs/IgvfApi.md#schemas) | **GET** /profiles | Retrieve JSON schemas for all item types
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+ *IgvfApi* | [**schema_for_item_type**](docs/IgvfApi.md#schema_for_item_type) | **GET** /profiles/{item_type} | Retrieve JSON schema for item type
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+ *IgvfApi* | [**report**](docs/IgvfApi.md#report) | **GET** /multireport.tsv | Generate a TSV file report based on search query. All results are returned.
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+ *IgvfApi* | [**download**](docs/IgvfApi.md#download) | **GET** /{file_id}/@@download | Download file.
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+ *IgvfApi* | [**batch_download**](docs/IgvfApi.md#batch_download) | **GET** /batch-download | List files to download based on search query. All results are returned.
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+
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+ ### **Collection Endpoints**
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+
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+ All URIs are relative to *https://api.data.igvf.org*
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+
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+ Class | Method | HTTP request | Description
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+ ------------ | ------------- | ------------- | -------------
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+ *IgvfApi* | [**access_keys**](docs/IgvfApi.md#access_keys) | **GET** /access-keys/@@listing | List items in the AccessKey collection.
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+ *IgvfApi* | [**alignment_files**](docs/IgvfApi.md#alignment_files) | **GET** /alignment-files/@@listing | List items in the AlignmentFile collection.
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+ *IgvfApi* | [**analysis_sets**](docs/IgvfApi.md#analysis_sets) | **GET** /analysis-sets/@@listing | List items in the AnalysisSet collection.
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+ *IgvfApi* | [**analysis_step_versions**](docs/IgvfApi.md#analysis_step_versions) | **GET** /analysis-step-versions/@@listing | List items in the AnalysisStepVersion collection.
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+ *IgvfApi* | [**analysis_steps**](docs/IgvfApi.md#analysis_steps) | **GET** /analysis-steps/@@listing | List items in the AnalysisStep collection.
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+ *IgvfApi* | [**assay_terms**](docs/IgvfApi.md#assay_terms) | **GET** /assay-terms/@@listing | List items in the AssayTerm collection.
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+ *IgvfApi* | [**auxiliary_sets**](docs/IgvfApi.md#auxiliary_sets) | **GET** /auxiliary-sets/@@listing | List items in the AuxiliarySet collection.
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+ *IgvfApi* | [**awards**](docs/IgvfApi.md#awards) | **GET** /awards/@@listing | List items in the Award collection.
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+ *IgvfApi* | [**biomarkers**](docs/IgvfApi.md#biomarkers) | **GET** /biomarkers/@@listing | List items in the Biomarker collection.
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+ *IgvfApi* | [**configuration_files**](docs/IgvfApi.md#configuration_files) | **GET** /configuration-files/@@listing | List items in the ConfigurationFile collection.
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+ *IgvfApi* | [**construct_library_sets**](docs/IgvfApi.md#construct_library_sets) | **GET** /construct-library-sets/@@listing | List items in the ConstructLibrarySet collection.
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+ *IgvfApi* | [**crispr_modifications**](docs/IgvfApi.md#crispr_modifications) | **GET** /crispr-modifications/@@listing | List items in the CrisprModification collection.
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+ *IgvfApi* | [**curated_sets**](docs/IgvfApi.md#curated_sets) | **GET** /curated-sets/@@listing | List items in the CuratedSet collection.
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+ *IgvfApi* | [**degron_modifications**](docs/IgvfApi.md#degron_modifications) | **GET** /degron-modifications/@@listing | List items in the DegronModification collection.
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+ *IgvfApi* | [**documents**](docs/IgvfApi.md#documents) | **GET** /documents/@@listing | List items in the Document collection.
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+ *IgvfApi* | [**genes**](docs/IgvfApi.md#genes) | **GET** /genes/@@listing | List items in the Gene collection.
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+ *IgvfApi* | [**genome_browser_annotation_files**](docs/IgvfApi.md#genome_browser_annotation_files) | **GET** /genome-browser-annotation-files/@@listing | List items in the GenomeBrowserAnnotationFile collection.
132
+ *IgvfApi* | [**human_donors**](docs/IgvfApi.md#human_donors) | **GET** /human-donors/@@listing | List items in the HumanDonor collection.
133
+ *IgvfApi* | [**image_files**](docs/IgvfApi.md#image_files) | **GET** /image-files/@@listing | List items in the ImageFile collection.
134
+ *IgvfApi* | [**images**](docs/IgvfApi.md#images) | **GET** /images/@@listing | List items in the Image collection.
135
+ *IgvfApi* | [**in_vitro_systems**](docs/IgvfApi.md#in_vitro_systems) | **GET** /in-vitro-systems/@@listing | List items in the InVitroSystem collection.
136
+ *IgvfApi* | [**institutional_certificates**](docs/IgvfApi.md#institutional_certificates) | **GET** /institutional-certificates/@@listing | List items in the InstitutionalCertificate collection.
137
+ *IgvfApi* | [**labs**](docs/IgvfApi.md#labs) | **GET** /labs/@@listing | List items in the Lab collection.
138
+ *IgvfApi* | [**matrix_files**](docs/IgvfApi.md#matrix_files) | **GET** /matrix-files/@@listing | List items in the MatrixFile collection.
139
+ *IgvfApi* | [**measurement_sets**](docs/IgvfApi.md#measurement_sets) | **GET** /measurement-sets/@@listing | List items in the MeasurementSet collection.
140
+ *IgvfApi* | [**model_files**](docs/IgvfApi.md#model_files) | **GET** /model-files/@@listing | List items in the ModelFile collection.
141
+ *IgvfApi* | [**model_sets**](docs/IgvfApi.md#model_sets) | **GET** /model-sets/@@listing | List items in the ModelSet collection.
142
+ *IgvfApi* | [**multiplexed_samples**](docs/IgvfApi.md#multiplexed_samples) | **GET** /multiplexed-samples/@@listing | List items in the MultiplexedSample collection.
143
+ *IgvfApi* | [**open_reading_frames**](docs/IgvfApi.md#open_reading_frames) | **GET** /open-reading-frames/@@listing | List items in the OpenReadingFrame collection.
144
+ *IgvfApi* | [**pages**](docs/IgvfApi.md#pages) | **GET** /pages/@@listing | List items in the Page collection.
145
+ *IgvfApi* | [**phenotype_terms**](docs/IgvfApi.md#phenotype_terms) | **GET** /phenotype-terms/@@listing | List items in the PhenotypeTerm collection.
146
+ *IgvfApi* | [**phenotypic_features**](docs/IgvfApi.md#phenotypic_features) | **GET** /phenotypic-features/@@listing | List items in the PhenotypicFeature collection.
147
+ *IgvfApi* | [**platform_terms**](docs/IgvfApi.md#platform_terms) | **GET** /platform-terms/@@listing | List items in the PlatformTerm collection.
148
+ *IgvfApi* | [**prediction_sets**](docs/IgvfApi.md#prediction_sets) | **GET** /prediction-sets/@@listing | List items in the PredictionSet collection.
149
+ *IgvfApi* | [**primary_cells**](docs/IgvfApi.md#primary_cells) | **GET** /primary-cells/@@listing | List items in the PrimaryCell collection.
150
+ *IgvfApi* | [**publications**](docs/IgvfApi.md#publications) | **GET** /publications/@@listing | List items in the Publication collection.
151
+ *IgvfApi* | [**reference_files**](docs/IgvfApi.md#reference_files) | **GET** /reference-files/@@listing | List items in the ReferenceFile collection.
152
+ *IgvfApi* | [**rodent_donors**](docs/IgvfApi.md#rodent_donors) | **GET** /rodent-donors/@@listing | List items in the RodentDonor collection.
153
+ *IgvfApi* | [**sample_terms**](docs/IgvfApi.md#sample_terms) | **GET** /sample-terms/@@listing | List items in the SampleTerm collection.
154
+ *IgvfApi* | [**sequence_files**](docs/IgvfApi.md#sequence_files) | **GET** /sequence-files/@@listing | List items in the SequenceFile collection.
155
+ *IgvfApi* | [**signal_files**](docs/IgvfApi.md#signal_files) | **GET** /signal-files/@@listing | List items in the SignalFile collection.
156
+ *IgvfApi* | [**software**](docs/IgvfApi.md#software) | **GET** /software/@@listing | List items in the Software collection.
157
+ *IgvfApi* | [**software_versions**](docs/IgvfApi.md#software_versions) | **GET** /software-versions/@@listing | List items in the SoftwareVersion collection.
158
+ *IgvfApi* | [**sources**](docs/IgvfApi.md#sources) | **GET** /sources/@@listing | List items in the Source collection.
159
+ *IgvfApi* | [**tabular_files**](docs/IgvfApi.md#tabular_files) | **GET** /tabular-files/@@listing | List items in the TabularFile collection.
160
+ *IgvfApi* | [**technical_samples**](docs/IgvfApi.md#technical_samples) | **GET** /technical-samples/@@listing | List items in the TechnicalSample collection.
161
+ *IgvfApi* | [**tissues**](docs/IgvfApi.md#tissues) | **GET** /tissues/@@listing | List items in the Tissue collection.
162
+ *IgvfApi* | [**treatments**](docs/IgvfApi.md#treatments) | **GET** /treatments/@@listing | List items in the Treatment collection.
163
+ *IgvfApi* | [**users**](docs/IgvfApi.md#users) | **GET** /users/@@listing | List items in the User collection.
164
+ *IgvfApi* | [**whole_organisms**](docs/IgvfApi.md#whole_organisms) | **GET** /whole-organisms/@@listing | List items in the WholeOrganism collection.
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+ *IgvfApi* | [**workflows**](docs/IgvfApi.md#workflows) | **GET** /workflows/@@listing | List items in the Workflow collection.
166
+
167
+ ## Documentation for Models
168
+
169
+ - [AccessKey](docs/AccessKey.md)
170
+ - [AccessKeyResults](docs/AccessKeyResults.md)
171
+ - [AlignmentFile](docs/AlignmentFile.md)
172
+ - [AlignmentFileResults](docs/AlignmentFileResults.md)
173
+ - [AnalysisSet](docs/AnalysisSet.md)
174
+ - [AnalysisSetResults](docs/AnalysisSetResults.md)
175
+ - [AnalysisStep](docs/AnalysisStep.md)
176
+ - [AnalysisStepResults](docs/AnalysisStepResults.md)
177
+ - [AnalysisStepVersion](docs/AnalysisStepVersion.md)
178
+ - [AnalysisStepVersionResults](docs/AnalysisStepVersionResults.md)
179
+ - [AssayTerm](docs/AssayTerm.md)
180
+ - [AssayTermResults](docs/AssayTermResults.md)
181
+ - [Attachment](docs/Attachment.md)
182
+ - [Attachment1](docs/Attachment1.md)
183
+ - [AuxiliarySet](docs/AuxiliarySet.md)
184
+ - [AuxiliarySetResults](docs/AuxiliarySetResults.md)
185
+ - [Award](docs/Award.md)
186
+ - [AwardResults](docs/AwardResults.md)
187
+ - [Biomarker](docs/Biomarker.md)
188
+ - [BiomarkerResults](docs/BiomarkerResults.md)
189
+ - [ConfigurationFile](docs/ConfigurationFile.md)
190
+ - [ConfigurationFileResults](docs/ConfigurationFileResults.md)
191
+ - [ConstructLibrarySet](docs/ConstructLibrarySet.md)
192
+ - [ConstructLibrarySetResults](docs/ConstructLibrarySetResults.md)
193
+ - [CrisprModification](docs/CrisprModification.md)
194
+ - [CrisprModificationResults](docs/CrisprModificationResults.md)
195
+ - [CuratedSet](docs/CuratedSet.md)
196
+ - [CuratedSetResults](docs/CuratedSetResults.md)
197
+ - [DegronModification](docs/DegronModification.md)
198
+ - [DegronModificationResults](docs/DegronModificationResults.md)
199
+ - [Document](docs/Document.md)
200
+ - [DocumentResults](docs/DocumentResults.md)
201
+ - [Gene](docs/Gene.md)
202
+ - [GeneLocation](docs/GeneLocation.md)
203
+ - [GeneLocation1](docs/GeneLocation1.md)
204
+ - [GeneResults](docs/GeneResults.md)
205
+ - [GenomeBrowserAnnotationFile](docs/GenomeBrowserAnnotationFile.md)
206
+ - [GenomeBrowserAnnotationFileResults](docs/GenomeBrowserAnnotationFileResults.md)
207
+ - [HumanDonor](docs/HumanDonor.md)
208
+ - [HumanDonorResults](docs/HumanDonorResults.md)
209
+ - [Image](docs/Image.md)
210
+ - [ImageFile](docs/ImageFile.md)
211
+ - [ImageFileResults](docs/ImageFileResults.md)
212
+ - [ImageResults](docs/ImageResults.md)
213
+ - [InVitroSystem](docs/InVitroSystem.md)
214
+ - [InVitroSystemResults](docs/InVitroSystemResults.md)
215
+ - [InstitutionalCertificate](docs/InstitutionalCertificate.md)
216
+ - [InstitutionalCertificateResults](docs/InstitutionalCertificateResults.md)
217
+ - [Item](docs/Item.md)
218
+ - [ItemType](docs/ItemType.md)
219
+ - [Lab](docs/Lab.md)
220
+ - [LabResults](docs/LabResults.md)
221
+ - [Limit](docs/Limit.md)
222
+ - [Locus](docs/Locus.md)
223
+ - [Locus1](docs/Locus1.md)
224
+ - [MatrixFile](docs/MatrixFile.md)
225
+ - [MatrixFileResults](docs/MatrixFileResults.md)
226
+ - [MeasurementSet](docs/MeasurementSet.md)
227
+ - [MeasurementSetResults](docs/MeasurementSetResults.md)
228
+ - [ModelFile](docs/ModelFile.md)
229
+ - [ModelFileResults](docs/ModelFileResults.md)
230
+ - [ModelSet](docs/ModelSet.md)
231
+ - [ModelSetResults](docs/ModelSetResults.md)
232
+ - [MultiplexedSample](docs/MultiplexedSample.md)
233
+ - [MultiplexedSampleResults](docs/MultiplexedSampleResults.md)
234
+ - [NoResultsResponse](docs/NoResultsResponse.md)
235
+ - [NoResultsResponseColumnsValue](docs/NoResultsResponseColumnsValue.md)
236
+ - [NoResultsResponseFacetGroupsInner](docs/NoResultsResponseFacetGroupsInner.md)
237
+ - [NoResultsResponseFacetsInner](docs/NoResultsResponseFacetsInner.md)
238
+ - [NoResultsResponseFacetsInnerTermsInner](docs/NoResultsResponseFacetsInnerTermsInner.md)
239
+ - [NoResultsResponseFiltersInner](docs/NoResultsResponseFiltersInner.md)
240
+ - [NoResultsResponseSortValue](docs/NoResultsResponseSortValue.md)
241
+ - [OpenReadingFrame](docs/OpenReadingFrame.md)
242
+ - [OpenReadingFrameResults](docs/OpenReadingFrameResults.md)
243
+ - [Page](docs/Page.md)
244
+ - [PageLayout](docs/PageLayout.md)
245
+ - [PageLayoutComponents](docs/PageLayoutComponents.md)
246
+ - [PageResults](docs/PageResults.md)
247
+ - [PhenotypeTerm](docs/PhenotypeTerm.md)
248
+ - [PhenotypeTermResults](docs/PhenotypeTermResults.md)
249
+ - [PhenotypicFeature](docs/PhenotypicFeature.md)
250
+ - [PhenotypicFeatureResults](docs/PhenotypicFeatureResults.md)
251
+ - [PlatformTerm](docs/PlatformTerm.md)
252
+ - [PlatformTermResults](docs/PlatformTermResults.md)
253
+ - [PredictionSet](docs/PredictionSet.md)
254
+ - [PredictionSetResults](docs/PredictionSetResults.md)
255
+ - [PrimaryCell](docs/PrimaryCell.md)
256
+ - [PrimaryCellResults](docs/PrimaryCellResults.md)
257
+ - [Publication](docs/Publication.md)
258
+ - [PublicationResults](docs/PublicationResults.md)
259
+ - [ReferenceFile](docs/ReferenceFile.md)
260
+ - [ReferenceFileResults](docs/ReferenceFileResults.md)
261
+ - [RelatedDonor](docs/RelatedDonor.md)
262
+ - [RodentDonor](docs/RodentDonor.md)
263
+ - [RodentDonorResults](docs/RodentDonorResults.md)
264
+ - [SampleTerm](docs/SampleTerm.md)
265
+ - [SampleTermResults](docs/SampleTermResults.md)
266
+ - [SearchFacet](docs/SearchFacet.md)
267
+ - [SearchResultItem](docs/SearchResultItem.md)
268
+ - [SearchResults](docs/SearchResults.md)
269
+ - [SequenceFile](docs/SequenceFile.md)
270
+ - [SequenceFileResults](docs/SequenceFileResults.md)
271
+ - [SignalFile](docs/SignalFile.md)
272
+ - [SignalFileResults](docs/SignalFileResults.md)
273
+ - [Software](docs/Software.md)
274
+ - [SoftwareResults](docs/SoftwareResults.md)
275
+ - [SoftwareVersion](docs/SoftwareVersion.md)
276
+ - [SoftwareVersionResults](docs/SoftwareVersionResults.md)
277
+ - [Source](docs/Source.md)
278
+ - [SourceResults](docs/SourceResults.md)
279
+ - [TabularFile](docs/TabularFile.md)
280
+ - [TabularFileResults](docs/TabularFileResults.md)
281
+ - [TechnicalSample](docs/TechnicalSample.md)
282
+ - [TechnicalSampleResults](docs/TechnicalSampleResults.md)
283
+ - [Tile](docs/Tile.md)
284
+ - [Tissue](docs/Tissue.md)
285
+ - [TissueResults](docs/TissueResults.md)
286
+ - [Treatment](docs/Treatment.md)
287
+ - [TreatmentResults](docs/TreatmentResults.md)
288
+ - [User](docs/User.md)
289
+ - [UserResults](docs/UserResults.md)
290
+ - [WholeOrganism](docs/WholeOrganism.md)
291
+ - [WholeOrganismResults](docs/WholeOrganismResults.md)
292
+ - [Workflow](docs/Workflow.md)
293
+ - [WorkflowResults](docs/WorkflowResults.md)
@@ -0,0 +1,158 @@
1
+ # coding: utf-8
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+
3
+ # flake8: noqa
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+
5
+ """
6
+ IGVF Project API
7
+
8
+ No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator)
9
+
10
+ The version of the OpenAPI document: 57.0.4
11
+ Generated by OpenAPI Generator (https://openapi-generator.tech)
12
+
13
+ Do not edit the class manually.
14
+ """ # noqa: E501
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+
16
+
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+ __version__ = "57.0.4"
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+
19
+ # import apis into sdk package
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+ from igvf_client.api.igvf_api import IgvfApi
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+
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+ # import ApiClient
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+ from igvf_client.api_response import ApiResponse
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+ from igvf_client.api_client import ApiClient
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+ from igvf_client.configuration import Configuration
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+ from igvf_client.exceptions import OpenApiException
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+ from igvf_client.exceptions import ApiTypeError
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+ from igvf_client.exceptions import ApiValueError
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+ from igvf_client.exceptions import ApiKeyError
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+ from igvf_client.exceptions import ApiAttributeError
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+ from igvf_client.exceptions import ApiException
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+
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+ # import models into sdk package
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+ from igvf_client.models.access_key import AccessKey
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+ from igvf_client.models.access_key_results import AccessKeyResults
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+ from igvf_client.models.alignment_file import AlignmentFile
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+ from igvf_client.models.alignment_file_results import AlignmentFileResults
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+ from igvf_client.models.analysis_set import AnalysisSet
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+ from igvf_client.models.analysis_set_results import AnalysisSetResults
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+ from igvf_client.models.analysis_step import AnalysisStep
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+ from igvf_client.models.analysis_step_results import AnalysisStepResults
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+ from igvf_client.models.analysis_step_version import AnalysisStepVersion
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+ from igvf_client.models.analysis_step_version_results import AnalysisStepVersionResults
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+ from igvf_client.models.assay_term import AssayTerm
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+ from igvf_client.models.assay_term_results import AssayTermResults
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+ from igvf_client.models.attachment import Attachment
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+ from igvf_client.models.attachment1 import Attachment1
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+ from igvf_client.models.auxiliary_set import AuxiliarySet
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+ from igvf_client.models.auxiliary_set_results import AuxiliarySetResults
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+ from igvf_client.models.award import Award
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+ from igvf_client.models.award_results import AwardResults
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+ from igvf_client.models.biomarker import Biomarker
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+ from igvf_client.models.biomarker_results import BiomarkerResults
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+ from igvf_client.models.configuration_file import ConfigurationFile
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+ from igvf_client.models.configuration_file_results import ConfigurationFileResults
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+ from igvf_client.models.construct_library_set import ConstructLibrarySet
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+ from igvf_client.models.construct_library_set_results import ConstructLibrarySetResults
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+ from igvf_client.models.crispr_modification import CrisprModification
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+ from igvf_client.models.crispr_modification_results import CrisprModificationResults
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+ from igvf_client.models.curated_set import CuratedSet
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+ from igvf_client.models.curated_set_results import CuratedSetResults
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+ from igvf_client.models.degron_modification import DegronModification
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+ from igvf_client.models.degron_modification_results import DegronModificationResults
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+ from igvf_client.models.document import Document
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+ from igvf_client.models.document_results import DocumentResults
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+ from igvf_client.models.gene import Gene
67
+ from igvf_client.models.gene_location import GeneLocation
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+ from igvf_client.models.gene_location1 import GeneLocation1
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+ from igvf_client.models.gene_results import GeneResults
70
+ from igvf_client.models.genome_browser_annotation_file import GenomeBrowserAnnotationFile
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+ from igvf_client.models.genome_browser_annotation_file_results import GenomeBrowserAnnotationFileResults
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+ from igvf_client.models.human_donor import HumanDonor
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+ from igvf_client.models.human_donor_results import HumanDonorResults
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+ from igvf_client.models.image import Image
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+ from igvf_client.models.image_file import ImageFile
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+ from igvf_client.models.image_file_results import ImageFileResults
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+ from igvf_client.models.image_results import ImageResults
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+ from igvf_client.models.in_vitro_system import InVitroSystem
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+ from igvf_client.models.in_vitro_system_results import InVitroSystemResults
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+ from igvf_client.models.institutional_certificate import InstitutionalCertificate
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+ from igvf_client.models.institutional_certificate_results import InstitutionalCertificateResults
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+ from igvf_client.models.item import Item
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+ from igvf_client.models.item_type import ItemType
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+ from igvf_client.models.lab import Lab
85
+ from igvf_client.models.lab_results import LabResults
86
+ from igvf_client.models.limit import Limit
87
+ from igvf_client.models.locus import Locus
88
+ from igvf_client.models.locus1 import Locus1
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+ from igvf_client.models.matrix_file import MatrixFile
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+ from igvf_client.models.matrix_file_results import MatrixFileResults
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+ from igvf_client.models.measurement_set import MeasurementSet
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+ from igvf_client.models.measurement_set_results import MeasurementSetResults
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+ from igvf_client.models.model_file import ModelFile
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+ from igvf_client.models.model_file_results import ModelFileResults
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+ from igvf_client.models.model_set import ModelSet
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+ from igvf_client.models.model_set_results import ModelSetResults
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+ from igvf_client.models.multiplexed_sample import MultiplexedSample
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+ from igvf_client.models.multiplexed_sample_results import MultiplexedSampleResults
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+ from igvf_client.models.no_results_response import NoResultsResponse
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+ from igvf_client.models.no_results_response_columns_value import NoResultsResponseColumnsValue
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+ from igvf_client.models.no_results_response_facet_groups_inner import NoResultsResponseFacetGroupsInner
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+ from igvf_client.models.no_results_response_facets_inner import NoResultsResponseFacetsInner
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+ from igvf_client.models.no_results_response_facets_inner_terms_inner import NoResultsResponseFacetsInnerTermsInner
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+ from igvf_client.models.no_results_response_filters_inner import NoResultsResponseFiltersInner
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+ from igvf_client.models.no_results_response_sort_value import NoResultsResponseSortValue
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+ from igvf_client.models.open_reading_frame import OpenReadingFrame
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+ from igvf_client.models.open_reading_frame_results import OpenReadingFrameResults
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+ from igvf_client.models.page import Page
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+ from igvf_client.models.page_layout import PageLayout
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+ from igvf_client.models.page_layout_components import PageLayoutComponents
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+ from igvf_client.models.page_results import PageResults
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+ from igvf_client.models.phenotype_term import PhenotypeTerm
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+ from igvf_client.models.phenotype_term_results import PhenotypeTermResults
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+ from igvf_client.models.phenotypic_feature import PhenotypicFeature
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+ from igvf_client.models.phenotypic_feature_results import PhenotypicFeatureResults
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+ from igvf_client.models.platform_term import PlatformTerm
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+ from igvf_client.models.platform_term_results import PlatformTermResults
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+ from igvf_client.models.prediction_set import PredictionSet
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+ from igvf_client.models.prediction_set_results import PredictionSetResults
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+ from igvf_client.models.primary_cell import PrimaryCell
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+ from igvf_client.models.primary_cell_results import PrimaryCellResults
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+ from igvf_client.models.publication import Publication
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+ from igvf_client.models.publication_results import PublicationResults
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+ from igvf_client.models.reference_file import ReferenceFile
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+ from igvf_client.models.reference_file_results import ReferenceFileResults
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+ from igvf_client.models.related_donor import RelatedDonor
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+ from igvf_client.models.rodent_donor import RodentDonor
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+ from igvf_client.models.rodent_donor_results import RodentDonorResults
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+ from igvf_client.models.sample_term import SampleTerm
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+ from igvf_client.models.sample_term_results import SampleTermResults
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+ from igvf_client.models.search_facet import SearchFacet
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+ from igvf_client.models.search_result_item import SearchResultItem
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+ from igvf_client.models.search_results import SearchResults
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+ from igvf_client.models.sequence_file import SequenceFile
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+ from igvf_client.models.sequence_file_results import SequenceFileResults
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+ from igvf_client.models.signal_file import SignalFile
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+ from igvf_client.models.signal_file_results import SignalFileResults
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+ from igvf_client.models.software import Software
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+ from igvf_client.models.software_results import SoftwareResults
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+ from igvf_client.models.software_version import SoftwareVersion
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+ from igvf_client.models.software_version_results import SoftwareVersionResults
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+ from igvf_client.models.source import Source
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+ from igvf_client.models.source_results import SourceResults
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+ from igvf_client.models.tabular_file import TabularFile
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+ from igvf_client.models.tabular_file_results import TabularFileResults
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+ from igvf_client.models.technical_sample import TechnicalSample
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+ from igvf_client.models.technical_sample_results import TechnicalSampleResults
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+ from igvf_client.models.tile import Tile
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+ from igvf_client.models.tissue import Tissue
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+ from igvf_client.models.tissue_results import TissueResults
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+ from igvf_client.models.treatment import Treatment
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+ from igvf_client.models.treatment_results import TreatmentResults
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+ from igvf_client.models.user import User
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+ from igvf_client.models.user_results import UserResults
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+ from igvf_client.models.whole_organism import WholeOrganism
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+ from igvf_client.models.whole_organism_results import WholeOrganismResults
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+ from igvf_client.models.workflow import Workflow
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+ from igvf_client.models.workflow_results import WorkflowResults
@@ -0,0 +1,5 @@
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+ # flake8: noqa
2
+
3
+ # import apis into api package
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+ from igvf_client.api.igvf_api import IgvfApi
5
+