PyPI - igvf-catalog-client - Versions diffs - 1.3.0__tar.gz - Mend

igvf-catalog-client 1.3.0__tar.gz

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igvf_catalog_client-1.3.0/LICENSE ADDED Viewed

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+MIT License
+Copyright (c) 2026 IGVF-DACC
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

igvf_catalog_client-1.3.0/PKG-INFO ADDED Viewed

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+Metadata-Version: 2.4
+Name: igvf_catalog_client
+Version: 1.3.0
+Summary: IGVF Catalog
+Home-page: https://github.com/IGVF-DACC/igvf-catalog-python-client
+Author: IGVF DACC
+Author-email: IGVF DACC <encode-help@lists.stanford.edu>
+License-Expression: MIT
+Project-URL: Repository, https://github.com/IGVF-DACC/igvf-catalog-python-client
+Keywords: OpenAPI,OpenAPI-Generator,IGVF Catalog
+Requires-Python: >=3.9
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: urllib3<3.0.0,>=2.1.0
+Requires-Dist: python-dateutil>=2.8.2
+Requires-Dist: pydantic>=2
+Requires-Dist: typing-extensions>=4.7.1
+Dynamic: author
+Dynamic: home-page
+Dynamic: license-file
+# igvf-catalog-client
+Python client for the [IGVF Catalog API](https://api.catalogkg.igvf.org/).
+IGVF Catalog OpenAPI compliant REST API built using tRPC with Express.
+Our database uses 0-based, half-open coordinates for genomic coordinates in the GRCh38 (human) and GRCm39 (mouse) reference genomes.
+Data is licensed under the <a href=https://creativecommons.org/licenses/by/4.0/ target=\"_blank\">Creative Commons license</a> and the software is licensed under the <a href=https://spdx.org/licenses/MIT.html target=\"_blank\">MIT license</a>.
+- API version: 1.3.0
+- Package version: 1.3.0
+- Generator version: 7.14.0
+This package is generated with [OpenAPI Generator](https://openapi-generator.tech) by
+[igvf-catalog-client-openapi-spec](https://github.com/IGVF-DACC/igvf-catalog-client-openapi-spec)
+whenever the IGVF Catalog changes. Don't edit generated files by hand; change
+`templates/` here or the pipeline in that repo instead.
+## Requirements
+Python 3.9+
+## Installation
+Releases follow IGVF Catalog releases and are published to PyPI:
+```sh
+pip install igvf-catalog-client
+```
+Development builds track the catalog's `dev` branch and are installed from this repo's `dev` branch:
+```sh
+pip install "git+https://github.com/IGVF-DACC/igvf-catalog-python-client.git@dev"
+```
+The default host is the API the package was generated against: releases use
+`https://api.catalogkg.igvf.org/api` and dev builds use
+`https://catalog-api-dev.demo.igvf.org/api`. Pass `Configuration(host=...)` to use another.
+## Quick start
+```python
+import igvf_catalog_client
+configuration = igvf_catalog_client.Configuration(host="https://api.catalogkg.igvf.org/api")
+with igvf_catalog_client.ApiClient(configuration) as api_client:
+    api = igvf_catalog_client.IgvfCatalogApi(api_client)
+    genes = api.genes(name="ATF3")
+    print(genes[0].to_dict())
+```
+Every endpoint is a method on `IgvfCatalogApi`, listed below. The interactive API documentation is at
+[api.catalogkg.igvf.org](https://api.catalogkg.igvf.org/).
+## Getting Started
+```python
+import igvf_catalog_client
+from igvf_catalog_client.rest import ApiException
+from pprint import pprint
+# Defining the host is optional and defaults to https://api.catalogkg.igvf.org/api
+# See configuration.py for a list of all supported configuration parameters.
+configuration = igvf_catalog_client.Configuration(
+    host = "https://api.catalogkg.igvf.org/api"
+)
+# Enter a context with an instance of the API client
+with igvf_catalog_client.ApiClient(configuration) as api_client:
+    # Create an instance of the API class
+    api_instance = igvf_catalog_client.IgvfCatalogApi(api_client)
+    gene_id = 'gene_id_example' # str |
+    dataset = 'dataset_example' # str |
+    page = 0 # float |  (optional) (default to 0)
+    limit = 3.4 # float |  (optional)
+    try:
+        api_response = api_instance.all_coding_variants_from_genes(gene_id, dataset, page=page, limit=limit)
+        print("The response of IgvfCatalogApi->all_coding_variants_from_genes:\n")
+        pprint(api_response)
+    except ApiException as e:
+        print("Exception when calling IgvfCatalogApi->all_coding_variants_from_genes: %s\n" % e)
+```
+## Documentation for API Endpoints
+All URIs are relative to *https://api.catalogkg.igvf.org/api*
+Class | Method | HTTP request | Description
+------------ | ------------- | ------------- | -------------
+*IgvfCatalogApi* | [**variants**](docs/IgvfCatalogApi.md#variants) | **GET** /variants |
+*IgvfCatalogApi* | [**coding_variants**](docs/IgvfCatalogApi.md#coding_variants) | **GET** /coding-variants |
+*IgvfCatalogApi* | [**genomic_elements**](docs/IgvfCatalogApi.md#genomic_elements) | **GET** /genomic-elements |
+*IgvfCatalogApi* | [**genes**](docs/IgvfCatalogApi.md#genes) | **GET** /genes |
+*IgvfCatalogApi* | [**genes_structure**](docs/IgvfCatalogApi.md#genes_structure) | **GET** /genes-structure |
+*IgvfCatalogApi* | [**transcripts**](docs/IgvfCatalogApi.md#transcripts) | **GET** /transcripts |
+*IgvfCatalogApi* | [**proteins**](docs/IgvfCatalogApi.md#proteins) | **GET** /proteins |
+*IgvfCatalogApi* | [**complexes**](docs/IgvfCatalogApi.md#complexes) | **GET** /complexes |
+*IgvfCatalogApi* | [**pathways**](docs/IgvfCatalogApi.md#pathways) | **GET** /pathways |
+*IgvfCatalogApi* | [**motifs**](docs/IgvfCatalogApi.md#motifs) | **GET** /motifs |
+*IgvfCatalogApi* | [**drugs**](docs/IgvfCatalogApi.md#drugs) | **GET** /drugs |
+*IgvfCatalogApi* | [**ontology_term**](docs/IgvfCatalogApi.md#ontology_term) | **GET** /ontology-terms |
+*IgvfCatalogApi* | [**studies**](docs/IgvfCatalogApi.md#studies) | **GET** /studies |
+*IgvfCatalogApi* | [**genomic_elements_from_variants**](docs/IgvfCatalogApi.md#genomic_elements_from_variants) | **GET** /variants/genomic-elements |
+*IgvfCatalogApi* | [**genes_from_variants**](docs/IgvfCatalogApi.md#genes_from_variants) | **GET** /variants/genes |
+*IgvfCatalogApi* | [**proteins_from_variants**](docs/IgvfCatalogApi.md#proteins_from_variants) | **GET** /variants/proteins |
+*IgvfCatalogApi* | [**phenotypes_from_variants**](docs/IgvfCatalogApi.md#phenotypes_from_variants) | **GET** /variants/phenotypes |
+*IgvfCatalogApi* | [**biosamples_from_variants**](docs/IgvfCatalogApi.md#biosamples_from_variants) | **GET** /variants/biosamples |
+*IgvfCatalogApi* | [**variants_from_proteins**](docs/IgvfCatalogApi.md#variants_from_proteins) | **GET** /proteins/variants |
+*IgvfCatalogApi* | [**proteins_proteins**](docs/IgvfCatalogApi.md#proteins_proteins) | **GET** /proteins/proteins |
+*IgvfCatalogApi* | [**variants_from_phenotypes**](docs/IgvfCatalogApi.md#variants_from_phenotypes) | **GET** /phenotypes/variants |
+*IgvfCatalogApi* | [**coding_variants_from_phenotypes**](docs/IgvfCatalogApi.md#coding_variants_from_phenotypes) | **GET** /phenotypes/coding-variants |
+*IgvfCatalogApi* | [**genomic_elements_from_phenotypes**](docs/IgvfCatalogApi.md#genomic_elements_from_phenotypes) | **GET** /phenotypes/genomic-elements |
+*IgvfCatalogApi* | [**variants_from_genomic_elements**](docs/IgvfCatalogApi.md#variants_from_genomic_elements) | **GET** /genomic-elements/variants |
+*IgvfCatalogApi* | [**genes_from_genomic_elements**](docs/IgvfCatalogApi.md#genes_from_genomic_elements) | **GET** /genomic-elements/genes |
+*IgvfCatalogApi* | [**phenotypes_from_genomic_elements**](docs/IgvfCatalogApi.md#phenotypes_from_genomic_elements) | **GET** /genomic-elements/phenotypes |
+*IgvfCatalogApi* | [**biosamples_from_genomic_elements**](docs/IgvfCatalogApi.md#biosamples_from_genomic_elements) | **GET** /genomic-elements/biosamples |
+*IgvfCatalogApi* | [**genomic_elements_from_genomic_elements**](docs/IgvfCatalogApi.md#genomic_elements_from_genomic_elements) | **GET** /genomic-elements/genomic-elements |
+*IgvfCatalogApi* | [**variants_from_genes**](docs/IgvfCatalogApi.md#variants_from_genes) | **GET** /genes/variants |
+*IgvfCatalogApi* | [**genomic_elements_from_genes**](docs/IgvfCatalogApi.md#genomic_elements_from_genes) | **GET** /genes/genomic-elements |
+*IgvfCatalogApi* | [**phenotypes_from_coding_variants**](docs/IgvfCatalogApi.md#phenotypes_from_coding_variants) | **GET** /coding-variants/phenotypes |
+*IgvfCatalogApi* | [**variants_from_biosamples**](docs/IgvfCatalogApi.md#variants_from_biosamples) | **GET** /biosamples/variants |
+*IgvfCatalogApi* | [**genomic_elements_from_biosamples**](docs/IgvfCatalogApi.md#genomic_elements_from_biosamples) | **GET** /biosamples/genomic-elements |
+*IgvfCatalogApi* | [**variant_by_frequency_source**](docs/IgvfCatalogApi.md#variant_by_frequency_source) | **GET** /variants/freq |
+*IgvfCatalogApi* | [**grn**](docs/IgvfCatalogApi.md#grn) | **GET** /gene-regulatory-network |
+*IgvfCatalogApi* | [**enhancer_gene_predictions**](docs/IgvfCatalogApi.md#enhancer_gene_predictions) | **GET** /enhancer-gene-predictions |
+*IgvfCatalogApi* | [**qtls**](docs/IgvfCatalogApi.md#qtls) | **GET** /qtls |
+*IgvfCatalogApi* | [**variant_summary**](docs/IgvfCatalogApi.md#variant_summary) | **GET** /variants/summary |
+*IgvfCatalogApi* | [**variants_from_variant_id_summary**](docs/IgvfCatalogApi.md#variants_from_variant_id_summary) | **GET** /variants/variant-ld/summary |
+*IgvfCatalogApi* | [**variants_region_summary**](docs/IgvfCatalogApi.md#variants_region_summary) | **GET** /variants/region-summary |
+*IgvfCatalogApi* | [**qtl_summary_endpoint**](docs/IgvfCatalogApi.md#qtl_summary_endpoint) | **GET** /variants/genes/summary |
+*IgvfCatalogApi* | [**genomic_elements_from_variants_count**](docs/IgvfCatalogApi.md#genomic_elements_from_variants_count) | **GET** /variants/predictions-count |
+*IgvfCatalogApi* | [**predictions_from_variants**](docs/IgvfCatalogApi.md#predictions_from_variants) | **GET** /variants/predictions |
+*IgvfCatalogApi* | [**deprecated_coding_variants_summary**](docs/IgvfCatalogApi.md#deprecated_coding_variants_summary) | **GET** /variants/phenotypes/score-summary |
+*IgvfCatalogApi* | [**nearest_genes**](docs/IgvfCatalogApi.md#nearest_genes) | **GET** /variants/nearest-genes |
+*IgvfCatalogApi* | [**variants_alleles**](docs/IgvfCatalogApi.md#variants_alleles) | **GET** /variants/gnomad-alleles |
+*IgvfCatalogApi* | [**variants_genomic_elements_genes**](docs/IgvfCatalogApi.md#variants_genomic_elements_genes) | **GET** /variants/genomic-elements/genes |
+*IgvfCatalogApi* | [**genomic_elements_predictions_from_variant**](docs/IgvfCatalogApi.md#genomic_elements_predictions_from_variant) | **GET** /variants/genomic-elements/cell-gene-predictions |
+*IgvfCatalogApi* | [**genes_proteins_from_variants**](docs/IgvfCatalogApi.md#genes_proteins_from_variants) | **GET** /variants/genes-proteins |
+*IgvfCatalogApi* | [**coding_variants_from_genes**](docs/IgvfCatalogApi.md#coding_variants_from_genes) | **GET** /genes/coding-variants/scores |
+*IgvfCatalogApi* | [**all_coding_variants_from_genes**](docs/IgvfCatalogApi.md#all_coding_variants_from_genes) | **GET** /genes/coding-variants/all-scores |
+*IgvfCatalogApi* | [**variants_from_gene_proteins**](docs/IgvfCatalogApi.md#variants_from_gene_proteins) | **GET** /genes-proteins/variants |
+*IgvfCatalogApi* | [**genes_proteins_genes_proteins**](docs/IgvfCatalogApi.md#genes_proteins_genes_proteins) | **GET** /genes-proteins/genes-proteins |
+*IgvfCatalogApi* | [**coding_variants_summary**](docs/IgvfCatalogApi.md#coding_variants_summary) | **GET** /coding-variants/phenotypes/score-summary |
+*IgvfCatalogApi* | [**coding_variants_count_from_gene**](docs/IgvfCatalogApi.md#coding_variants_count_from_gene) | **GET** /coding-variants/phenotypes-count |
+*IgvfCatalogApi* | [**ontology_term_parents**](docs/IgvfCatalogApi.md#ontology_term_parents) | **GET** /ontology-terms/{ontology_term_id}/parents |
+*IgvfCatalogApi* | [**ontology_term_children**](docs/IgvfCatalogApi.md#ontology_term_children) | **GET** /ontology-terms/{ontology_term_id}/children |
+*IgvfCatalogApi* | [**ontology_term_transitive_closure**](docs/IgvfCatalogApi.md#ontology_term_transitive_closure) | **GET** /ontology-terms/{ontology_term_id_start}/transitive-closure/{ontology_term_id_end} |
+*IgvfCatalogApi* | [**variants_from_variant_id**](docs/IgvfCatalogApi.md#variants_from_variant_id) | **GET** /variants/variant-ld |
+*IgvfCatalogApi* | [**coding_variants_from_variants**](docs/IgvfCatalogApi.md#coding_variants_from_variants) | **GET** /variants/coding-variants |
+*IgvfCatalogApi* | [**drugs_from_variants**](docs/IgvfCatalogApi.md#drugs_from_variants) | **GET** /variants/drugs |
+*IgvfCatalogApi* | [**disease_from_variants**](docs/IgvfCatalogApi.md#disease_from_variants) | **GET** /variants/diseases |
+*IgvfCatalogApi* | [**variants_from_coding_variants**](docs/IgvfCatalogApi.md#variants_from_coding_variants) | **GET** /coding-variants/variants |
+*IgvfCatalogApi* | [**transcripts_from_genes**](docs/IgvfCatalogApi.md#transcripts_from_genes) | **GET** /genes/transcripts |
+*IgvfCatalogApi* | [**genes_transcripts_genes**](docs/IgvfCatalogApi.md#genes_transcripts_genes) | **GET** /genes/transcripts/genes |
+*IgvfCatalogApi* | [**proteins_from_genes**](docs/IgvfCatalogApi.md#proteins_from_genes) | **GET** /genes/proteins |
+*IgvfCatalogApi* | [**pathways_from_genes**](docs/IgvfCatalogApi.md#pathways_from_genes) | **GET** /genes/pathways |
+*IgvfCatalogApi* | [**genes_genes**](docs/IgvfCatalogApi.md#genes_genes) | **GET** /genes/genes |
+*IgvfCatalogApi* | [**diseases_from_genes**](docs/IgvfCatalogApi.md#diseases_from_genes) | **GET** /genes/diseases |
+*IgvfCatalogApi* | [**genes_from_transcripts**](docs/IgvfCatalogApi.md#genes_from_transcripts) | **GET** /transcripts/genes |
+*IgvfCatalogApi* | [**proteins_from_transcripts**](docs/IgvfCatalogApi.md#proteins_from_transcripts) | **GET** /transcripts/proteins |
+*IgvfCatalogApi* | [**transcripts_from_proteins**](docs/IgvfCatalogApi.md#transcripts_from_proteins) | **GET** /proteins/transcripts |
+*IgvfCatalogApi* | [**genes_from_proteins**](docs/IgvfCatalogApi.md#genes_from_proteins) | **GET** /proteins/genes |
+*IgvfCatalogApi* | [**complexes_from_proteins**](docs/IgvfCatalogApi.md#complexes_from_proteins) | **GET** /proteins/complexes |
+*IgvfCatalogApi* | [**proteins_from_complexes**](docs/IgvfCatalogApi.md#proteins_from_complexes) | **GET** /complexes/proteins |
+*IgvfCatalogApi* | [**motifs_from_proteins**](docs/IgvfCatalogApi.md#motifs_from_proteins) | **GET** /proteins/motifs |
+*IgvfCatalogApi* | [**proteins_from_motifs**](docs/IgvfCatalogApi.md#proteins_from_motifs) | **GET** /motifs/proteins |
+*IgvfCatalogApi* | [**genes_from_pathways**](docs/IgvfCatalogApi.md#genes_from_pathways) | **GET** /pathways/genes |
+*IgvfCatalogApi* | [**pathways_from_pathways**](docs/IgvfCatalogApi.md#pathways_from_pathways) | **GET** /pathways/pathways |
+*IgvfCatalogApi* | [**annotations_from_go_terms**](docs/IgvfCatalogApi.md#annotations_from_go_terms) | **GET** /go-terms/gene-products |
+*IgvfCatalogApi* | [**go_terms_from_annotations**](docs/IgvfCatalogApi.md#go_terms_from_annotations) | **GET** /gene-products/go-terms |
+*IgvfCatalogApi* | [**variants_from_diseases**](docs/IgvfCatalogApi.md#variants_from_diseases) | **GET** /diseases/variants |
+*IgvfCatalogApi* | [**genes_from_diseases**](docs/IgvfCatalogApi.md#genes_from_diseases) | **GET** /diseases/genes |
+*IgvfCatalogApi* | [**variants_from_drugs**](docs/IgvfCatalogApi.md#variants_from_drugs) | **GET** /drugs/variants |
+*IgvfCatalogApi* | [**files_filesets**](docs/IgvfCatalogApi.md#files_filesets) | **GET** /files-filesets |
+*IgvfCatalogApi* | [**llm_query**](docs/IgvfCatalogApi.md#llm_query) | **POST** /llm-query |
+## Documentation For Models
+ - [AccessibleGenomicElement](docs/AccessibleGenomicElement.md)
+ - [AccessibleGenomicElementPromoterOf](docs/AccessibleGenomicElementPromoterOf.md)
+ - [Annotations](docs/Annotations.md)
+ - [AnnotationsFromGoTerms](docs/AnnotationsFromGoTerms.md)
+ - [Biosamples](docs/Biosamples.md)
+ - [BiosamplesFromGenomicElements](docs/BiosamplesFromGenomicElements.md)
+ - [BiosamplesFromGenomicElementsBiosample](docs/BiosamplesFromGenomicElementsBiosample.md)
+ - [BiosamplesFromGenomicElementsGenomicElement](docs/BiosamplesFromGenomicElementsGenomicElement.md)
+ - [BiosamplesFromVariants](docs/BiosamplesFromVariants.md)
+ - [BiosamplesFromVariantsGenomicElement](docs/BiosamplesFromVariantsGenomicElement.md)
+ - [BiosamplesFromVariantsVariant](docs/BiosamplesFromVariantsVariant.md)
+ - [CaddScores](docs/CaddScores.md)
+ - [CellTypes](docs/CellTypes.md)
+ - [CellTypes2](docs/CellTypes2.md)
+ - [CodingVariant](docs/CodingVariant.md)
+ - [CodingVariants](docs/CodingVariants.md)
+ - [CodingVariantsFromGenes](docs/CodingVariantsFromGenes.md)
+ - [CodingVariantsFromPhenotypes](docs/CodingVariantsFromPhenotypes.md)
+ - [CodingVariantsSummary](docs/CodingVariantsSummary.md)
+ - [Complex](docs/Complex.md)
+ - [ComplexComplexAssembly](docs/ComplexComplexAssembly.md)
+ - [ComplexesFromProteins](docs/ComplexesFromProteins.md)
+ - [ComplexesFromProteinsComplex](docs/ComplexesFromProteinsComplex.md)
+ - [ComplexesFromProteinsProtein](docs/ComplexesFromProteinsProtein.md)
+ - [DiseaseFromVariants](docs/DiseaseFromVariants.md)
+ - [DiseaseFromVariantsSequenceVariant](docs/DiseaseFromVariantsSequenceVariant.md)
+ - [DiseasesFromGenes](docs/DiseasesFromGenes.md)
+ - [DiseasesFromGenesGene](docs/DiseasesFromGenesGene.md)
+ - [Drug](docs/Drug.md)
+ - [DrugsFromVariants](docs/DrugsFromVariants.md)
+ - [DrugsFromVariantsDrug](docs/DrugsFromVariantsDrug.md)
+ - [Elements](docs/Elements.md)
+ - [EnhancerGenePredictions](docs/EnhancerGenePredictions.md)
+ - [EnhancerGenePredictionsElements](docs/EnhancerGenePredictionsElements.md)
+ - [FilesFilesets](docs/FilesFilesets.md)
+ - [Gene](docs/Gene.md)
+ - [Gene4](docs/Gene4.md)
+ - [Gene6](docs/Gene6.md)
+ - [GeneCompact](docs/GeneCompact.md)
+ - [GeneNoSynonyms](docs/GeneNoSynonyms.md)
+ - [GeneRef](docs/GeneRef.md)
+ - [Genes](docs/Genes.md)
+ - [Genes2](docs/Genes2.md)
+ - [GenesFromGenomicElements](docs/GenesFromGenomicElements.md)
+ - [GenesFromGenomicElementsGene](docs/GenesFromGenomicElementsGene.md)
+ - [GenesFromGenomicElementsGenomicElement](docs/GenesFromGenomicElementsGenomicElement.md)
+ - [GenesFromGenomicElementsPValue](docs/GenesFromGenomicElementsPValue.md)
+ - [GenesFromPathways](docs/GenesFromPathways.md)
+ - [GenesFromPathwaysPathway](docs/GenesFromPathwaysPathway.md)
+ - [GenesFromProteins](docs/GenesFromProteins.md)
+ - [GenesFromTranscripts](docs/GenesFromTranscripts.md)
+ - [GenesFromTranscriptsTranscript](docs/GenesFromTranscriptsTranscript.md)
+ - [GenesFromVariants](docs/GenesFromVariants.md)
+ - [GenesFromVariantsSequenceVariant](docs/GenesFromVariantsSequenceVariant.md)
+ - [GenesFromVariantsStudy](docs/GenesFromVariantsStudy.md)
+ - [GenesGenes](docs/GenesGenes.md)
+ - [GenesGenesGene1](docs/GenesGenesGene1.md)
+ - [GenesProteinsFromVariants](docs/GenesProteinsFromVariants.md)
+ - [GenesProteinsGenesProteins](docs/GenesProteinsGenesProteins.md)
+ - [GenesStructure](docs/GenesStructure.md)
+ - [GenesTranscriptsGenes](docs/GenesTranscriptsGenes.md)
+ - [GenesTranscriptsGenesTranscript](docs/GenesTranscriptsGenesTranscript.md)
+ - [GenomicElement](docs/GenomicElement.md)
+ - [GenomicElement2](docs/GenomicElement2.md)
+ - [GenomicElement4](docs/GenomicElement4.md)
+ - [GenomicElement5](docs/GenomicElement5.md)
+ - [GenomicElement7](docs/GenomicElement7.md)
+ - [GenomicElement9](docs/GenomicElement9.md)
+ - [GenomicElementFull](docs/GenomicElementFull.md)
+ - [GenomicElementsFromGenomicElements](docs/GenomicElementsFromGenomicElements.md)
+ - [GenomicElementsFromGenomicElementsPerturbedGenomicElement](docs/GenomicElementsFromGenomicElementsPerturbedGenomicElement.md)
+ - [GenomicElementsFromPhenotypes](docs/GenomicElementsFromPhenotypes.md)
+ - [GenomicElementsFromPhenotypesPhenotype](docs/GenomicElementsFromPhenotypesPhenotype.md)
+ - [GenomicElementsFromVariants](docs/GenomicElementsFromVariants.md)
+ - [GenomicElementsPredictionsFromVariant](docs/GenomicElementsPredictionsFromVariant.md)
+ - [Grn](docs/Grn.md)
+ - [IdName](docs/IdName.md)
+ - [InlineObject](docs/InlineObject.md)
+ - [InlineObjectIssuesInner](docs/InlineObjectIssuesInner.md)
+ - [LinkedFeature](docs/LinkedFeature.md)
+ - [LlmQuery](docs/LlmQuery.md)
+ - [LlmQueryRequest](docs/LlmQueryRequest.md)
+ - [MethodCount](docs/MethodCount.md)
+ - [MethodsAndContexts](docs/MethodsAndContexts.md)
+ - [Motif](docs/Motif.md)
+ - [MotifsFromProteins](docs/MotifsFromProteins.md)
+ - [MotifsFromProteinsMotif](docs/MotifsFromProteinsMotif.md)
+ - [NearestGene](docs/NearestGene.md)
+ - [NearestGenes](docs/NearestGenes.md)
+ - [OntologyTerm](docs/OntologyTerm.md)
+ - [OntologyTermBasic](docs/OntologyTermBasic.md)
+ - [OntologyTermChildren](docs/OntologyTermChildren.md)
+ - [OntologyTermTransitiveClosure](docs/OntologyTermTransitiveClosure.md)
+ - [Paths](docs/Paths.md)
+ - [Pathway](docs/Pathway.md)
+ - [PathwaysFromPathways](docs/PathwaysFromPathways.md)
+ - [Phenotype](docs/Phenotype.md)
+ - [PhenotypeRef](docs/PhenotypeRef.md)
+ - [PhenotypesFromVariants](docs/PhenotypesFromVariants.md)
+ - [PhenotypesFromVariants37](docs/PhenotypesFromVariants37.md)
+ - [PhenotypesFromVariantsStudy](docs/PhenotypesFromVariantsStudy.md)
+ - [PhenotypesFromVariantsVariant](docs/PhenotypesFromVariantsVariant.md)
+ - [Predictions](docs/Predictions.md)
+ - [Predictions2](docs/Predictions2.md)
+ - [PredictionsFromVariants](docs/PredictionsFromVariants.md)
+ - [Protein](docs/Protein.md)
+ - [ProteinBasic](docs/ProteinBasic.md)
+ - [ProteinChange](docs/ProteinChange.md)
+ - [ProteinCompact](docs/ProteinCompact.md)
+ - [ProteinComplexOption](docs/ProteinComplexOption.md)
+ - [ProteinsFromTranscripts](docs/ProteinsFromTranscripts.md)
+ - [ProteinsFromTranscriptsProtein](docs/ProteinsFromTranscriptsProtein.md)
+ - [ProteinsFromVariants](docs/ProteinsFromVariants.md)
+ - [ProteinsFromVariantsBiosampleTerm](docs/ProteinsFromVariantsBiosampleTerm.md)
+ - [ProteinsFromVariantsProteinComplex](docs/ProteinsFromVariantsProteinComplex.md)
+ - [ProteinsProteins](docs/ProteinsProteins.md)
+ - [ProteinsProteinsProtein1](docs/ProteinsProteinsProtein1.md)
+ - [QtlSummaryEndpoint](docs/QtlSummaryEndpoint.md)
+ - [Qtls](docs/Qtls.md)
+ - [Qtls3](docs/Qtls3.md)
+ - [Related](docs/Related.md)
+ - [RelatedGene](docs/RelatedGene.md)
+ - [RelatedItem](docs/RelatedItem.md)
+ - [RelatedSources](docs/RelatedSources.md)
+ - [Scores](docs/Scores.md)
+ - [SequenceVariant](docs/SequenceVariant.md)
+ - [SequenceVariant9](docs/SequenceVariant9.md)
+ - [Sources](docs/Sources.md)
+ - [Sources4](docs/Sources4.md)
+ - [Study](docs/Study.md)
+ - [Study2](docs/Study2.md)
+ - [StudyParameters](docs/StudyParameters.md)
+ - [Summary](docs/Summary.md)
+ - [TargetGene](docs/TargetGene.md)
+ - [TfBinding](docs/TfBinding.md)
+ - [Transcript](docs/Transcript.md)
+ - [Variant](docs/Variant.md)
+ - [VariantAnnotations](docs/VariantAnnotations.md)
+ - [VariantBasic](docs/VariantBasic.md)
+ - [VariantMinimal](docs/VariantMinimal.md)
+ - [VariantRef](docs/VariantRef.md)
+ - [VariantSummary](docs/VariantSummary.md)
+ - [Variants](docs/Variants.md)
+ - [VariantsAllelesValue](docs/VariantsAllelesValue.md)
+ - [VariantsFromDrugs](docs/VariantsFromDrugs.md)
+ - [VariantsFromPhenotypesItem](docs/VariantsFromPhenotypesItem.md)
+ - [VariantsFromVariantID](docs/VariantsFromVariantID.md)
+ - [VariantsFromVariantIDSequenceVariant](docs/VariantsFromVariantIDSequenceVariant.md)
+ - [VariantsFromVariantIDSummary](docs/VariantsFromVariantIDSummary.md)
+ - [VariantsGenomicElementsGenes](docs/VariantsGenomicElementsGenes.md)
+ - [VariantsRegionSummary](docs/VariantsRegionSummary.md)
+<a id="documentation-for-authorization"></a>
+## Documentation For Authorization
+Authentication schemes defined for the API:
+<a id="Authorization"></a>
+### Authorization
+- **Type**: Bearer authentication
+## Author
+encode-help@lists.stanford.edu