hydraflow 0.16.1__tar.gz → 0.17.0__tar.gz

{hydraflow-0.16.1 → hydraflow-0.17.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: hydraflow
-Version: 0.16.1
+Version: 0.17.0
 Summary: HydraFlow seamlessly integrates Hydra and MLflow to streamline ML experiment management, combining Hydra's configuration management with MLflow's tracking capabilities.
 Project-URL: Documentation, https://daizutabi.github.io/hydraflow/
 Project-URL: Source, https://github.com/daizutabi/hydraflow
@@ -194,10 +194,6 @@ For detailed documentation, visit our [documentation site](https://daizutabi.git
 - [User Guide](https://daizutabi.github.io/hydraflow/part1-applications/) - Detailed documentation of HydraFlow's capabilities
 - [API Reference](https://daizutabi.github.io/hydraflow/api/hydraflow/) - Complete API documentation
 
-## Contributing
-
-We welcome contributions! Please see our [contributing guide](CONTRIBUTING.md) for details.
-
 ## License
 
-This project is licensed under the MIT License - see the [LICENSE](LICENSE) file for details.
+This project is licensed under the MIT License.

{hydraflow-0.16.1 → hydraflow-0.17.0}/README.md

@@ -141,10 +141,6 @@ For detailed documentation, visit our [documentation site](https://daizutabi.git
 - [User Guide](https://daizutabi.github.io/hydraflow/part1-applications/) - Detailed documentation of HydraFlow's capabilities
 - [API Reference](https://daizutabi.github.io/hydraflow/api/hydraflow/) - Complete API documentation
 
-## Contributing
-
-We welcome contributions! Please see our [contributing guide](CONTRIBUTING.md) for details.
-
 ## License
 
-This project is licensed under the MIT License - see the [LICENSE](LICENSE) file for details.
+This project is licensed under the MIT License.

{hydraflow-0.16.1 → hydraflow-0.17.0}/docs/part3-analysis/index.md

@@ -20,11 +20,15 @@ The main components of HydraFlow's analysis tools are:
 1. **[`Run`][hydraflow.core.run.Run] Class**: Represents a single experiment
    run, providing access to configuration and artifacts.
 
-2. **[`RunCollection`][hydraflow.core.run_collection.RunCollection] Class**:
-   A collection of `Run` instances with tools for filtering, grouping, and
-   aggregating results.
+2. **[`Collection`][hydraflow.core.collection.Collection] Class**: A generic base class
+   implementing the `Sequence` protocol with powerful filtering, grouping, and data
+   extraction capabilities.
 
-3. **Data Analysis Integration**: Tools to convert experiment data into
+3. **[`RunCollection`][hydraflow.core.run_collection.RunCollection] Class**:
+   A collection of `Run` instances with specialized tools for filtering, grouping, and
+   aggregating results, built on top of the `Collection` class.
+
+4. **Data Analysis Integration**: Tools to convert experiment data into
    Polars DataFrames for advanced analysis.
 
 ## Practical Examples
@@ -47,6 +51,12 @@ filtered_runs = runs.filter(learning_rate=0.01, model_type="transformer")
 # Group runs by a parameter
 grouped_runs = runs.group_by("batch_size")
 
+# Aggregate grouped data
+df_aggregated = grouped_runs.agg(
+    count=lambda runs: len(runs),
+    avg_accuracy=lambda runs: sum(run.get("accuracy", 0) for run in runs) / len(runs)
+)
+
 # Convert to DataFrame for analysis
 df = runs.to_frame("learning_rate", "batch_size", accuracy=lambda run: run.get("accuracy"))
 
@@ -141,4 +151,9 @@ In the following pages, we'll explore HydraFlow's analysis tools in detail:
   working with multiple runs.
 
 - [Updating Runs](updating-runs.md): Learn how to update existing runs with
-  new metrics, tags, and artifacts.
+  new metrics, tags, and artifacts.
+
+[hydraflow.core.run.Run]: ../../api/hydraflow/core/run.html#hydraflow.core.run.Run
+[hydraflow.core.run_collection.RunCollection]: ../../api/hydraflow/core/run_collection.html#hydraflow.core.run_collection.RunCollection
+[hydraflow.core.collection.Collection]: ../../api/hydraflow/core/collection.html#hydraflow.core.collection.Collection
+[hydraflow.core.io.iter_run_dirs]: ../../api/hydraflow/core/io.html#hydraflow.core.io.iter_run_dirs

{hydraflow-0.16.1 → hydraflow-0.17.0}/docs/part3-analysis/run-class.md

@@ -63,22 +63,25 @@ model_type = run.get("model__type")  # Equivalent to "model.type"
 metric_value = run.get("accuracy")  # From impl or cfg
 run_id = run.get("run_id")  # From RunInfo
 
+# Access special object keys
+cfg = run.get("cfg")    # Returns the complete configuration object
+impl = run.get("impl")  # Returns the implementation object
+info = run.get("info")  # Returns the run information object
+
 # Provide a default value if the key doesn't exist
 batch_size = run.get("batch_size", 32)
 
 # Use a callable as default to dynamically generate values based on the run
 # This is useful for derived parameters or conditional defaults
 lr = run.get("learning_rate", default=lambda r: r.get("base_lr", 0.01) / 10)
-
-# Complex default logic based on other parameters
-steps = run.get("steps", default=lambda r: r.get("epochs", 10) * r.get("steps_per_epoch", 100))
 ```
 
 The `get` method searches for values in the following order:
 
-1. First in the configuration (`cfg`)
-2. Then in the implementation instance (`impl`)
-3. Finally in the run information (`info`)
+1. In the configuration (`cfg`)
+2. In the implementation instance (`impl`)
+3. In the run information (`info`)
+4. In the run object itself (`self`)
 
 This provides a unified access interface regardless of where the data is stored.
 

{hydraflow-0.16.1 → hydraflow-0.17.0}/docs/part3-analysis/run-collection.md

@@ -5,6 +5,22 @@ powerful tool for working with multiple experiment runs. It provides methods
 for filtering, grouping, and analyzing sets of [`Run`][hydraflow.core.run.Run]
 instances, making it easy to compare and extract insights from your experiments.
 
+## Architecture
+
+`RunCollection` is built on top of the more general [`Collection`][hydraflow.core.collection.Collection]
+class, which provides a flexible foundation for working with sequences of items. This architecture offers several benefits:
+
+1. **Consistent Interface**: All collection-based classes in HydraFlow share a common interface and behavior
+2. **Code Reuse**: Core functionality is implemented once in the base class and inherited by specialized collections
+3. **Extensibility**: New collection types can easily be created for different item types
+4. **Type Safety**: Generic type parameters ensure type checking throughout the collection hierarchy
+
+The `Collection` class implements the Python `Sequence` protocol, allowing it to be used like standard Python
+collections (lists, tuples) while providing specialized methods for filtering, grouping, and data extraction.
+
+`RunCollection` extends this foundation with run-specific functionality, particularly for working with MLflow
+experiment data. This layered design separates generic collection behavior from domain-specific operations.
+
 ## Creating a Run Collection
 
 There are several ways to create a `RunCollection`:
@@ -101,7 +117,7 @@ multiple_models = runs.filter(model_type=["transformer", "lstm"])
 def is_large_image(run: Run):
     return run.get("width") + run.get("height") > 100
 
-good_runs = runs.filter(predicate=is_large_image)
+good_runs = runs.filter(is_large_image)
 ```
 
 The double underscore notation (`__`) is particularly useful for accessing nested
@@ -133,7 +149,7 @@ def has_efficient_lr(run: Run) -> bool:
     return lr * batch_size < 0.5
 
 # Apply the complex predicate
-efficient_runs = runs.filter(predicate=has_efficient_lr)
+efficient_runs = runs.filter(has_efficient_lr)
 ```
 
 The combination of predicate functions with callable defaults in `get` enables sophisticated
@@ -250,6 +266,11 @@ df = runs.to_frame()
 # DataFrame with specific configuration parameters
 df = runs.to_frame("model_type", "learning_rate", "batch_size")
 
+# Include Run, configuration, or implementation objects as columns
+df = runs.to_frame("model_type", "learning_rate", "run")  # Include Run objects
+df = runs.to_frame("model_type", "cfg")  # Include configuration objects
+df = runs.to_frame("run_id", "run", "cfg", "impl")  # Include all objects
+
 # Specify default values for missing parameters using the defaults parameter
 df = runs.to_frame(
     "model_type",
@@ -258,17 +279,6 @@ df = runs.to_frame(
     defaults={"learning_rate": 0.01, "batch_size": 32}
 )
 
-# Use callable defaults for dynamic values based on each run
-df = runs.to_frame(
-    "model_type",
-    "learning_rate",
-    "epochs",
-    defaults={
-        "learning_rate": lambda run: run.get("base_lr", 0.01) * run.get("lr_multiplier", 1.0),
-        "epochs": lambda run: int(run.get("max_steps", 1000) / run.get("steps_per_epoch", 100))
-    }
-)
-
 # Missing values without defaults are represented as None (null) in the DataFrame
 # This allows for standard handling of missing data in Polars
 missing_values_df = runs.to_frame("model_type", "parameter_that_might_be_missing")
@@ -281,24 +291,6 @@ valid_rows = missing_values_df.filter(pl.col("parameter_that_might_be_missing").
 filled_df = missing_values_df.with_columns(
     pl.col("parameter_that_might_be_missing").fill_null("default_value")
 )
-
-# Using a custom function that returns multiple columns as keyword arguments
-def get_metrics(run: Run) -> dict[str, float]:
-    return {
-        "accuracy": run.get("accuracy", default=lambda r: r.get("val_accuracy", 0.0) * 0.9),
-        "precision": run.get("precision", default=lambda r: r.get("val_precision", 0.0) * 0.9),
-    }
-
-# Add custom columns using a function
-df = runs.to_frame("model_type", metrics=get_metrics)
-
-# Combine defaults with custom column generator functions
-df = runs.to_frame(
-    "model_type",
-    "learning_rate",
-    defaults={"learning_rate": 0.01},
-    metrics=get_metrics
-)
 ```
 
 The `to_frame` method provides several ways to handle missing data:
@@ -313,12 +305,10 @@ The `to_frame` method provides several ways to handle missing data:
      - Fill nulls: `df.with_columns(pl.col("param").fill_null(value))`
      - Aggregations: Most aggregation functions handle nulls appropriately
 
-3. **Custom column generators**: Use keyword argument functions to compute complex columns
-   - These functions receive each Run instance and can implement custom logic
-   - They can use `run.get()` with defaults to handle missing parameters
-
-These approaches can be combined to create flexible and robust data extraction pipelines
-that handle different experiment configurations and parameter evolution over time.
+3. **Special object keys**: Use the special keys `"run"`, `"cfg"`, and `"impl"` to include the actual
+   Run objects, configuration objects, or implementation objects in the DataFrame
+   - This allows direct access to the original objects for further operations
+   - You can combine regular data columns with object columns as needed
 
 ## Grouping Runs
 
@@ -331,6 +321,12 @@ model_groups = runs.group_by("model_type")
 # Group by nested parameter using dot notation
 architecture_groups = runs.group_by("model.architecture")
 
+# Group by and include Run objects in the result DataFrame
+model_groups_df = runs.group_by("model_type", "run")
+
+# Include multiple object types in the result
+grouped_df = runs.group_by("model_type", "batch_size", "run", "cfg")
+
 # Iterate through groups
 for model_type, group in model_groups.items():
     print(f"Model type: {model_type}, Runs: {len(group)}")
@@ -343,75 +339,28 @@ param_groups = runs.group_by("model_type", "model__hidden_size", "optimizer__lea
 
 # Access a specific group
 transformer_001_group = param_groups[("transformer", 0.001)]
+
+# Aggregating grouped runs using the agg method
+# This returns a DataFrame with the aggregated results
+model_counts = model_groups.agg(count=lambda runs: len(runs))
+model_avg_loss = model_groups.agg(
+    avg_loss=lambda runs: sum(run.get("loss", 0) for run in runs) / len(runs),
+    min_loss=lambda runs: min(run.get("loss", float("inf")) for run in runs)
+)
 ```
 
-When no aggregation functions are provided, `group_by` returns a dictionary mapping keys to `RunCollection` instances. This intentional design allows you to:
+The `group_by` method returns a `GroupBy` instance that maps keys to `RunCollection` instances. This design allows you to:
 
 - Work with each group as a separate `RunCollection` with all the filtering, sorting, and analysis capabilities
 - Perform custom operations on each group that might not be expressible as simple aggregation functions
 - Chain additional operations on specific groups that interest you
 - Implement multi-stage analysis workflows where you need to maintain the full run information at each step
 
-This approach preserves all information in each group, giving you maximum flexibility for downstream analysis.
-
-## Aggregation with Group By
-
-Combine `group_by` with aggregation for powerful analysis:
-
-```python
-# Simple aggregation function using get method with callable defaults
-def mean_accuracy(runs: RunCollection) -> float:
-    return runs.to_numpy(
-        "accuracy",
-        default=lambda run: run.get("val_accuracy", 0.0) * 0.9
-    ).mean()
-
-# Complex aggregation from implementation or configuration with fallbacks
-def combined_metric(runs: RunCollection) -> float:
-    # Use callable defaults to handle missing values consistently
-    accuracies = runs.to_numpy("accuracy", default=lambda r: r.get("val_accuracy", 0.0))
-    precisions = runs.to_numpy("precision", default=lambda r: r.get("val_precision", 0.0))
-    return (accuracies.mean() + precisions.mean()) / 2
-
-
-# Group by model type and calculate average accuracy
-model_accuracies = runs.group_by(
-    "model_type",
-    accuracy=mean_accuracy
-)
-
-# Group by multiple parameters with multiple aggregations
-results = runs.group_by(
-    "model_type",
-    "learning_rate",
-    count=len,
-    accuracy=mean_accuracy,
-    combined=combined_metric
-)
-
-# Group by parameters that might be missing in some runs using callable defaults
-def normalize_architecture(run: Run) -> str:
-    # Get architecture with a fallback to model type if not available
-    arch = run.get("architecture", default=lambda r: r.get("model_type", "unknown"))
-    return arch.lower()  # Normalize to lowercase
-
-# Group by the normalized architecture
-arch_results = runs.group_by(normalize_architecture, accuracy=mean_accuracy)
-```
-
-With the enhanced `get` method and callable defaults support throughout the API, writing aggregation
-functions becomes more straightforward and robust. You can handle missing values consistently and
-implement complex transformations that work across heterogeneous runs.
-
-When aggregation functions are provided as keyword arguments, `group_by` returns a Polars DataFrame with the group keys and aggregated values. This design choice offers several advantages:
+To perform aggregations on the grouped data, use the `agg` method on the GroupBy instance. This transforms the grouped data into a DataFrame with aggregated results. You can define multiple aggregation functions to compute different metrics across each group.
 
-- Directly produces analysis-ready results with all aggregations computed in a single operation
-- Enables efficient downstream analysis using Polars' powerful DataFrame operations
-- Simplifies visualization and reporting workflows
-- Reduces memory usage by computing only the requested aggregations rather than maintaining full RunCollections
-- Creates a clean interface that separates grouping from additional analysis steps
+When special object keys (`"run"`, `"cfg"`, `"impl"`) are included in the `group_by` call, it returns a DataFrame with those objects included as columns, making it easy to access the original objects for further processing.
 
-The DataFrame output is particularly useful for final analysis steps where you need to summarize results across many runs or prepare data for visualization.
+This approach preserves all information in each group, giving you maximum flexibility for downstream analysis.
 
 ## Type-Safe Run Collections
 
@@ -483,7 +432,7 @@ for run in runs:
    type checking.
 
 3. **Chain Operations**: Combine filtering, grouping,
-   and aggregation for efficient analysis workflows.
+   and object extraction for efficient analysis workflows.
 
 4. **Use DataFrame Integration**: Convert to DataFrames
    for complex analysis and visualization needs.
@@ -492,6 +441,8 @@ for run in runs:
 
 The [`RunCollection`][hydraflow.core.run_collection.RunCollection] class is a
 powerful tool for comparative analysis of machine learning experiments. Its
-filtering, grouping, and aggregation capabilities enable efficient extraction
+filtering, grouping, and data extraction capabilities enable efficient extraction
 of insights from large sets of experiments, helping you identify optimal
-configurations and understand performance trends.
+configurations and understand performance trends.
+
+[hydraflow.core.collection.Collection]: ../../api/hydraflow/core/collection.html#hydraflow.core.collection.Collection

{hydraflow-0.16.1 → hydraflow-0.17.0}/docs/practical-tutorials/advanced.md

@@ -61,7 +61,7 @@ Where:
 - `[overrides]` are optional Hydra-style parameter overrides
 
 For more details on the CLI,
-see the [Job Configuration](../part2-advanced/job-configuration.md#command-line-interface)
+see the [Job Configuration](../part2-advanced/job-configuration.md)
 documentation.
 
 ## Previewing Execution with Dry Run

{hydraflow-0.16.1 → hydraflow-0.17.0}/docs/practical-tutorials/analysis.md

@@ -288,7 +288,7 @@ Or dictionaries for multiple named columns:
 
 ### Grouping Runs
 
-The [`group_by`][hydraflow.core.run_collection.RunCollection.group_by] method organizes runs by common attributes:
+The [`group_by`][hydraflow.core.collection.Collection.group_by] method organizes runs by common attributes:
 
 ```pycon exec="1" source="console" session="results" workdir="examples"
 >>> grouped = rc.group_by("width")
@@ -304,10 +304,11 @@ You can group by multiple keys:
 ...     print(key, group)
 ```
 
-Adding aggregation functions transforms the result into a DataFrame:
+Adding aggregation functions using the `agg` method transforms the result into a DataFrame:
 
 ```pycon exec="1" source="console" session="results" workdir="examples"
->>> df = rc.group_by("width", n=lambda runs: len(runs))
+>>> grouped = rc.group_by("width")
+>>> df = grouped.agg(n=lambda runs: len(runs))
 >>> print(df)
 ```
 

{hydraflow-0.16.1 → hydraflow-0.17.0}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "hydraflow"
-version = "0.16.1"
+version = "0.17.0"
 description = "HydraFlow seamlessly integrates Hydra and MLflow to streamline ML experiment management, combining Hydra's configuration management with MLflow's tracking capabilities."
 readme = "README.md"
 license = { file = "LICENSE" }