httomo-backends 0.8.0__tar.gz → 0.9.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (164) hide show
  1. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/PKG-INFO +1 -1
  2. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/httomolib/httomolib.yaml +8 -0
  3. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/httomolib/httomolib_modules.yaml +1 -0
  4. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/httomolibgpu/httomolibgpu.yaml +30 -2
  5. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/httomolibgpu/httomolibgpu_modules.yaml +1 -0
  6. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/prep/normalize.py +2 -2
  7. httomo_backends-0.9.1/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/prep/phase.py +47 -0
  8. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/query.py +10 -0
  9. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/pipelines_full/FBP2d_astra_directive.yaml +4 -2
  10. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/pipelines_full/FBP3d_tomobar_denoising_directive.yaml +5 -3
  11. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/pipelines_full/FBP3d_tomobar_directive.yaml +5 -3
  12. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/pipelines_full/FBP3d_tomobar_noimagesaving_directive.yaml +5 -3
  13. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/pipelines_full/FISTA3d_tomobar_directive.yaml +4 -2
  14. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/pipelines_full/LPRec3d_tomobar_directive.yaml +5 -3
  15. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/pipelines_full/deg360_distortion_FBP3d_tomobar_directive.yaml +5 -3
  16. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/pipelines_full/deg360_paganin_FBP3d_tomobar_directive.yaml +3 -3
  17. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/pipelines_full/sweep_center_FBP3d_tomobar_directive.yaml +3 -1
  18. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/pipelines_full/sweep_paganin_FBP3d_tomobar_directive.yaml +2 -2
  19. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/pipelines_full/titaren_center_pc_FBP3d_resample_directive.yaml +4 -2
  20. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/scripts/yaml_pipelines_generator.py +9 -5
  21. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/scripts/yaml_templates_generator.py +5 -0
  22. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomo/httomo.data.hdf.loaders/standard_tomo.yaml +1 -0
  23. httomo_backends-0.9.1/httomo_backends/yaml_templates/httomolib/httomolib.misc.utils/data_checker.yaml +7 -0
  24. httomo_backends-0.9.1/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.utils/data_checker.yaml +7 -0
  25. httomo_backends-0.8.0/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.normalize/normalize.yaml → httomo_backends-0.9.1/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.normalize/dark_flat_field_correction.yaml +1 -4
  26. httomo_backends-0.9.1/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.normalize/minus_log.yaml +3 -0
  27. httomo_backends-0.9.1/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.phase/paganin_filter_savu_legacy.yaml +7 -0
  28. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/CGLS3d_tomobar.yaml +0 -1
  29. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FBP2d_astra.yaml +0 -1
  30. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FBP3d_tomobar.yaml +0 -1
  31. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FISTA3d_tomobar.yaml +0 -1
  32. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/LPRec3d_tomobar.yaml +0 -5
  33. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/SIRT3d_tomobar.yaml +0 -1
  34. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends.egg-info/PKG-INFO +1 -1
  35. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends.egg-info/SOURCES.txt +5 -1
  36. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/pyproject.toml +1 -1
  37. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/tests/test_httomolibgpu.py +80 -11
  38. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/tests/test_method_query.py +18 -6
  39. httomo_backends-0.8.0/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/prep/phase.py +0 -111
  40. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/LICENSE +0 -0
  41. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/README.rst +0 -0
  42. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/__init__.py +0 -0
  43. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/cufft.py +0 -0
  44. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/__init__.py +0 -0
  45. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/__init__.py +0 -0
  46. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/httomolibgpu/__init__.py +0 -0
  47. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/__init__.py +0 -0
  48. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/misc/__init__.py +0 -0
  49. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/misc/corr.py +0 -0
  50. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/misc/denoise.py +0 -0
  51. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/misc/morph.py +0 -0
  52. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/misc/rescale.py +0 -0
  53. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/prep/__init__.py +0 -0
  54. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/prep/stripe.py +0 -0
  55. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/recon/__init__.py +0 -0
  56. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/recon/algorithm.py +0 -0
  57. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/recon/peak_memory_line_profile_hook.py +0 -0
  58. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/tomopy/__init__.py +0 -0
  59. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/__init__.py +0 -0
  60. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/misc/__init__.py +0 -0
  61. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/misc/corr.py +0 -0
  62. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/prep/__init__.py +0 -0
  63. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/prep/stripe.py +0 -0
  64. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/recon/__init__.py +0 -0
  65. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/recon/algorithm.py +0 -0
  66. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/tomopy/tomopy.yaml +0 -0
  67. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/backends/tomopy/tomopy_modules.yaml +0 -0
  68. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/methods_database/packages/httomo.yaml +0 -0
  69. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/pipelines_full/__init__.py +0 -0
  70. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/pipelines_full/tomopy_gridrec_directive.yaml +0 -0
  71. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/scripts/__init__.py +0 -0
  72. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/scripts/json_pipelines_generator.py +0 -0
  73. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/scripts/yaml_unsupported_tomopy_remove.py +0 -0
  74. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomo/__init__.py +0 -0
  75. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomo/httomo.methods/calculate_stats.yaml +0 -0
  76. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomo/httomo.methods/save_intermediate_data.yaml +0 -0
  77. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolib/__init__.py +0 -0
  78. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolib/httomolib.misc.images/save_to_images.yaml +0 -0
  79. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolib/httomolib.misc.morph/data_reducer.yaml +0 -0
  80. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolib/httomolib.misc.rescale/rescale_to_int.yaml +0 -0
  81. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolib/httomolib.misc.segm/binary_thresholding.yaml +0 -0
  82. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolib/httomolib.prep.phase/paganin_filter.yaml +0 -0
  83. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolibgpu/__init__.py +0 -0
  84. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.corr/median_filter.yaml +0 -0
  85. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.corr/remove_outlier.yaml +0 -0
  86. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.denoise/total_variation_PD.yaml +0 -0
  87. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.denoise/total_variation_ROF.yaml +0 -0
  88. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.morph/data_resampler.yaml +0 -0
  89. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.morph/sino_360_to_180.yaml +0 -0
  90. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.rescale/rescale_to_int.yaml +0 -0
  91. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.alignment/distortion_correction_proj_discorpy.yaml +0 -0
  92. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.phase/paganin_filter.yaml +0 -0
  93. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.stripe/raven_filter.yaml +0 -0
  94. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.stripe/remove_all_stripe.yaml +0 -0
  95. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.stripe/remove_stripe_based_sorting.yaml +0 -0
  96. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.stripe/remove_stripe_ti.yaml +0 -0
  97. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.rotation/find_center_360.yaml +0 -0
  98. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.rotation/find_center_pc.yaml +0 -0
  99. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.rotation/find_center_vo.yaml +0 -0
  100. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/__init__.py +0 -0
  101. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/adjust_range.yaml +0 -0
  102. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/circ_mask.yaml +0 -0
  103. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/gaussian_filter.yaml +0 -0
  104. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/median_filter.yaml +0 -0
  105. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/median_filter3d.yaml +0 -0
  106. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/median_filter_nonfinite.yaml +0 -0
  107. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/remove_nan.yaml +0 -0
  108. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/remove_neg.yaml +0 -0
  109. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/remove_outlier.yaml +0 -0
  110. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/remove_outlier1d.yaml +0 -0
  111. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/remove_outlier3d.yaml +0 -0
  112. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/remove_ring.yaml +0 -0
  113. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/sobel_filter.yaml +0 -0
  114. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.misc.morph/downsample.yaml +0 -0
  115. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.misc.morph/pad.yaml +0 -0
  116. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.misc.morph/sino_360_to_180.yaml +0 -0
  117. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.misc.morph/trim_sinogram.yaml +0 -0
  118. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.misc.morph/upsample.yaml +0 -0
  119. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.alignment/add_jitter.yaml +0 -0
  120. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.alignment/add_noise.yaml +0 -0
  121. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.alignment/align_joint.yaml +0 -0
  122. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.alignment/align_seq.yaml +0 -0
  123. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.alignment/blur_edges.yaml +0 -0
  124. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.alignment/distortion_correction_proj.yaml +0 -0
  125. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.alignment/distortion_correction_sino.yaml +0 -0
  126. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.alignment/scale.yaml +0 -0
  127. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.alignment/shift_images.yaml +0 -0
  128. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.normalize/minus_log.yaml +0 -0
  129. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.normalize/normalize.yaml +0 -0
  130. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.normalize/normalize_bg.yaml +0 -0
  131. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.normalize/normalize_nf.yaml +0 -0
  132. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.normalize/normalize_roi.yaml +0 -0
  133. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.phase/retrieve_phase.yaml +0 -0
  134. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.stripe/remove_all_stripe.yaml +0 -0
  135. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.stripe/remove_dead_stripe.yaml +0 -0
  136. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.stripe/remove_large_stripe.yaml +0 -0
  137. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.stripe/remove_stripe_based_filtering.yaml +0 -0
  138. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.stripe/remove_stripe_based_fitting.yaml +0 -0
  139. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.stripe/remove_stripe_based_interpolation.yaml +0 -0
  140. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.stripe/remove_stripe_based_sorting.yaml +0 -0
  141. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.stripe/remove_stripe_fw.yaml +0 -0
  142. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.stripe/remove_stripe_sf.yaml +0 -0
  143. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.stripe/remove_stripe_ti.yaml +0 -0
  144. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.stripe/stripes_detect3d.yaml +0 -0
  145. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.prep.stripe/stripes_mask3d.yaml +0 -0
  146. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.recon.algorithm/recon.yaml +0 -0
  147. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.recon.rotation/find_center.yaml +0 -0
  148. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.recon.rotation/find_center_pc.yaml +0 -0
  149. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.recon.rotation/find_center_vo.yaml +0 -0
  150. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.sim.project/add_drift.yaml +0 -0
  151. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.sim.project/add_focal_spot_blur.yaml +0 -0
  152. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.sim.project/add_gaussian.yaml +0 -0
  153. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.sim.project/add_poisson.yaml +0 -0
  154. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.sim.project/add_rings.yaml +0 -0
  155. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.sim.project/add_salt_pepper.yaml +0 -0
  156. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.sim.project/add_zingers.yaml +0 -0
  157. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.sim.project/project.yaml +0 -0
  158. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.sim.project/project2.yaml +0 -0
  159. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends/yaml_templates/tomopy/tomopy.sim.project/project3.yaml +0 -0
  160. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends.egg-info/dependency_links.txt +0 -0
  161. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends.egg-info/requires.txt +0 -0
  162. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/httomo_backends.egg-info/top_level.txt +0 -0
  163. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/setup.cfg +0 -0
  164. {httomo_backends-0.8.0 → httomo_backends-0.9.1}/tests/test_tomopy.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: httomo-backends
3
- Version: 0.8.0
3
+ Version: 0.9.1
4
4
  Summary: Supplementary files for HTTomo backends.
5
5
  Author: Garry ODonnell, Jacob Williamson
6
6
  Author-email: Daniil Kazantsev <daniil.kazantsev@diamond.ac.uk>, Yousef Moazzam <yousef.moazzam@diamond.ac.uk>, Jessica Verschoyle <jessica.verschoyle@diamond.ac.uk>, Naman Gera <naman.gera@diamond.ac.uk>, scientificsoftware@diamond.ac.uk
@@ -1,4 +1,12 @@
1
1
  misc:
2
+ utils:
3
+ data_checker:
4
+ pattern: all
5
+ output_dims_change: False
6
+ implementation: cpu
7
+ memory_gpu: None
8
+ save_result_default: False
9
+ padding: False
2
10
  rescale:
3
11
  rescale_to_int:
4
12
  pattern: all
@@ -1,3 +1,4 @@
1
+ - httomolib.misc.utils
1
2
  - httomolib.misc.rescale
2
3
  - httomolib.misc.morph
3
4
  - httomolib.misc.images
@@ -1,4 +1,14 @@
1
1
  misc:
2
+ utils:
3
+ data_checker:
4
+ pattern: all
5
+ output_dims_change: False
6
+ implementation: gpu_cupy
7
+ save_result_default: False
8
+ padding: False
9
+ memory_gpu:
10
+ multiplier: 1.0
11
+ method: direct
2
12
  corr:
3
13
  median_filter:
4
14
  pattern: all
@@ -68,7 +78,7 @@ misc:
68
78
  method: module
69
79
  prep:
70
80
  normalize:
71
- normalize:
81
+ dark_flat_field_correction:
72
82
  pattern: projection
73
83
  output_dims_change: False
74
84
  implementation: gpu_cupy
@@ -77,6 +87,15 @@ prep:
77
87
  memory_gpu:
78
88
  multiplier: None
79
89
  method: module
90
+ minus_log:
91
+ pattern: all
92
+ output_dims_change: False
93
+ implementation: gpu_cupy
94
+ save_result_default: False
95
+ padding: False
96
+ memory_gpu:
97
+ multiplier: 3.0
98
+ method: direct
80
99
  phase:
81
100
  paganin_filter:
82
101
  pattern: projection
@@ -86,7 +105,16 @@ prep:
86
105
  padding: False
87
106
  memory_gpu:
88
107
  multiplier: None
89
- method: module
108
+ method: iterative
109
+ paganin_filter_savu_legacy:
110
+ pattern: projection
111
+ output_dims_change: False
112
+ implementation: gpu_cupy
113
+ save_result_default: False
114
+ padding: False
115
+ memory_gpu:
116
+ multiplier: None
117
+ method: iterative
90
118
  alignment:
91
119
  distortion_correction_proj_discorpy:
92
120
  pattern: projection
@@ -1,3 +1,4 @@
1
+ - httomolibgpu.misc.utils
1
2
  - httomolibgpu.misc.corr
2
3
  - httomolibgpu.misc.denoise
3
4
  - httomolibgpu.misc.morph
@@ -3,11 +3,11 @@ import numpy as np
3
3
 
4
4
 
5
5
  __all__ = [
6
- "_calc_memory_bytes_normalize",
6
+ "_calc_memory_bytes_dark_flat_field_correction",
7
7
  ]
8
8
 
9
9
 
10
- def _calc_memory_bytes_normalize(
10
+ def _calc_memory_bytes_dark_flat_field_correction(
11
11
  non_slice_dims_shape: Tuple[int, int],
12
12
  dtype: np.dtype,
13
13
  **kwargs,
@@ -0,0 +1,47 @@
1
+ #!/usr/bin/env python3
2
+ # -*- coding: utf-8 -*-
3
+ # ---------------------------------------------------------------------------
4
+ # Copyright 2022 Diamond Light Source Ltd.
5
+ #
6
+ # Licensed under the Apache License, Version 2.0 (the "License");
7
+ # you may not use this file except in compliance with the License.
8
+ # You may obtain a copy of the License at
9
+ #
10
+ # http://www.apache.org/licenses/LICENSE-2.0
11
+ #
12
+ # Unless required by applicable law or agreed to in writing, software
13
+ # distributed under the License is distributed on an "AS IS" BASIS,
14
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
15
+ # See the License for the specific language governing permissions and
16
+ # limitations under the License.
17
+ # ---------------------------------------------------------------------------
18
+ # Created By : Tomography Team at DLS <scientificsoftware@diamond.ac.uk>
19
+ # Created Date: 21 September 2023
20
+ # ---------------------------------------------------------------------------
21
+ """Modules for memory estimation for phase retrieval and phase-contrast enhancement"""
22
+
23
+ from typing import Tuple
24
+ import numpy as np
25
+
26
+ from httomolibgpu.prep.phase import paganin_filter, paganin_filter_savu_legacy
27
+
28
+ __all__ = [
29
+ "_calc_memory_bytes_for_slices_paganin_filter",
30
+ "_calc_memory_bytes_for_slices_paganin_filter_savu_legacy",
31
+ ]
32
+
33
+
34
+ def _calc_memory_bytes_for_slices_paganin_filter(
35
+ dims_shape: Tuple[int, int, int],
36
+ dtype: np.dtype,
37
+ **kwargs,
38
+ ) -> int:
39
+ return paganin_filter(dims_shape, calc_peak_gpu_mem=True, **kwargs)
40
+
41
+
42
+ def _calc_memory_bytes_for_slices_paganin_filter_savu_legacy(
43
+ dims_shape: Tuple[int, int, int],
44
+ dtype: np.dtype,
45
+ **kwargs,
46
+ ) -> int:
47
+ return paganin_filter_savu_legacy(dims_shape, calc_peak_gpu_mem=True, **kwargs)
@@ -143,6 +143,16 @@ class MethodsDatabaseQuery:
143
143
  )
144
144
  return memory_bytes
145
145
 
146
+ def calculate_memory_bytes_for_slices(
147
+ self, dims_shape: Tuple[int, int, int], dtype: np.dtype, **kwargs
148
+ ) -> int:
149
+ smodule = self._import_supporting_funcs_module()
150
+ module_mem: Callable = getattr(
151
+ smodule, "_calc_memory_bytes_for_slices_" + self.method_name
152
+ )
153
+ memory_bytes: int = module_mem(dims_shape, dtype, **kwargs)
154
+ return memory_bytes
155
+
146
156
  def calculate_output_dims(
147
157
  self, non_slice_dims_shape: Tuple[int, int], **kwargs
148
158
  ) -> Tuple[int, int]:
@@ -1,9 +1,11 @@
1
1
  - method: standard_tomo
2
2
  module_path: httomo.data.hdf.loaders
3
+ - method: dark_flat_field_correction
4
+ module_path: httomolibgpu.prep.normalize
3
5
  - method: find_center_vo
4
6
  module_path: httomolibgpu.recon.rotation
5
- - method: normalize
6
- module_path: httomolibgpu.prep.normalize
7
+ - method: minus_log
8
+ module_path: httomolibgpu.prep.normalize
7
9
  - method: FBP2d_astra
8
10
  module_path: httomolibgpu.recon.algorithm
9
11
 
@@ -1,13 +1,15 @@
1
1
  - method: standard_tomo
2
2
  module_path: httomo.data.hdf.loaders
3
- - method: find_center_vo
4
- module_path: httomolibgpu.recon.rotation
5
3
  - method: remove_outlier
6
4
  module_path: httomolibgpu.misc.corr
7
- - method: normalize
5
+ - method: dark_flat_field_correction
8
6
  module_path: httomolibgpu.prep.normalize
7
+ - method: find_center_vo
8
+ module_path: httomolibgpu.recon.rotation
9
9
  - method: remove_all_stripe
10
10
  module_path: httomolibgpu.prep.stripe
11
+ - method: minus_log
12
+ module_path: httomolibgpu.prep.normalize
11
13
  - method: FBP3d_tomobar
12
14
  module_path: httomolibgpu.recon.algorithm
13
15
  - method: total_variation_PD
@@ -1,13 +1,15 @@
1
1
  - method: standard_tomo
2
2
  module_path: httomo.data.hdf.loaders
3
- - method: find_center_vo
4
- module_path: httomolibgpu.recon.rotation
5
3
  - method: remove_outlier
6
4
  module_path: httomolibgpu.misc.corr
7
- - method: normalize
5
+ - method: dark_flat_field_correction
8
6
  module_path: httomolibgpu.prep.normalize
7
+ - method: find_center_vo
8
+ module_path: httomolibgpu.recon.rotation
9
9
  - method: remove_all_stripe
10
10
  module_path: httomolibgpu.prep.stripe
11
+ - method: minus_log
12
+ module_path: httomolibgpu.prep.normalize
11
13
  - method: FBP3d_tomobar
12
14
  module_path: httomolibgpu.recon.algorithm
13
15
  - method: calculate_stats
@@ -1,12 +1,14 @@
1
1
  - method: standard_tomo
2
2
  module_path: httomo.data.hdf.loaders
3
- - method: find_center_vo
4
- module_path: httomolibgpu.recon.rotation
5
3
  - method: remove_outlier
6
4
  module_path: httomolibgpu.misc.corr
7
- - method: normalize
5
+ - method: dark_flat_field_correction
8
6
  module_path: httomolibgpu.prep.normalize
7
+ - method: find_center_vo
8
+ module_path: httomolibgpu.recon.rotation
9
9
  - method: remove_stripe_based_sorting
10
10
  module_path: httomolibgpu.prep.stripe
11
+ - method: minus_log
12
+ module_path: httomolibgpu.prep.normalize
11
13
  - method: FBP3d_tomobar
12
14
  module_path: httomolibgpu.recon.algorithm
@@ -1,9 +1,11 @@
1
1
  - method: standard_tomo
2
2
  module_path: httomo.data.hdf.loaders
3
+ - method: dark_flat_field_correction
4
+ module_path: httomolibgpu.prep.normalize
3
5
  - method: find_center_vo
4
6
  module_path: httomolibgpu.recon.rotation
5
- - method: normalize
6
- module_path: httomolibgpu.prep.normalize
7
+ - method: minus_log
8
+ module_path: httomolibgpu.prep.normalize
7
9
  - method: FISTA3d_tomobar
8
10
  module_path: httomolibgpu.recon.algorithm
9
11
  - method: calculate_stats
@@ -1,13 +1,15 @@
1
1
  - method: standard_tomo
2
2
  module_path: httomo.data.hdf.loaders
3
- - method: find_center_vo
4
- module_path: httomolibgpu.recon.rotation
5
3
  - method: remove_outlier
6
4
  module_path: httomolibgpu.misc.corr
7
- - method: normalize
5
+ - method: dark_flat_field_correction
8
6
  module_path: httomolibgpu.prep.normalize
7
+ - method: find_center_vo
8
+ module_path: httomolibgpu.recon.rotation
9
9
  - method: remove_all_stripe
10
10
  module_path: httomolibgpu.prep.stripe
11
+ - method: minus_log
12
+ module_path: httomolibgpu.prep.normalize
11
13
  - method: LPRec3d_tomobar
12
14
  module_path: httomolibgpu.recon.algorithm
13
15
  - method: calculate_stats
@@ -1,15 +1,17 @@
1
1
  - method: standard_tomo
2
2
  module_path: httomo.data.hdf.loaders
3
- - method: find_center_360
4
- module_path: httomolibgpu.recon.rotation
5
- - method: normalize
3
+ - method: dark_flat_field_correction
6
4
  module_path: httomolibgpu.prep.normalize
7
5
  - method: distortion_correction_proj_discorpy
8
6
  module_path: httomolibgpu.prep.alignment
7
+ - method: find_center_360
8
+ module_path: httomolibgpu.recon.rotation
9
9
  - method: sino_360_to_180
10
10
  module_path: httomolibgpu.misc.morph
11
11
  - method: remove_stripe_based_sorting
12
12
  module_path: httomolibgpu.prep.stripe
13
+ - method: minus_log
14
+ module_path: httomolibgpu.prep.normalize
13
15
  - method: FBP3d_tomobar
14
16
  module_path: httomolibgpu.recon.algorithm
15
17
  - method: calculate_stats
@@ -1,9 +1,9 @@
1
1
  - method: standard_tomo
2
2
  module_path: httomo.data.hdf.loaders
3
+ - method: dark_flat_field_correction
4
+ module_path: httomolibgpu.prep.normalize
3
5
  - method: find_center_360
4
- module_path: httomolibgpu.recon.rotation
5
- - method: normalize
6
- module_path: httomolibgpu.prep.normalize
6
+ module_path: httomolibgpu.recon.rotation
7
7
  - method: sino_360_to_180
8
8
  module_path: httomolibgpu.misc.morph
9
9
  - method: remove_stripe_based_sorting
@@ -1,7 +1,9 @@
1
1
  - method: standard_tomo
2
2
  module_path: httomo.data.hdf.loaders
3
- - method: normalize
3
+ - method: dark_flat_field_correction
4
4
  module_path: httomolibgpu.prep.normalize
5
+ - method: minus_log
6
+ module_path: httomolibgpu.prep.normalize
5
7
  - method: FBP3d_tomobar
6
8
  module_path: httomolibgpu.recon.algorithm
7
9
  sweep_parameter: center
@@ -1,9 +1,9 @@
1
1
  - method: standard_tomo
2
2
  module_path: httomo.data.hdf.loaders
3
+ - method: dark_flat_field_correction
4
+ module_path: httomolibgpu.prep.normalize
3
5
  - method: find_center_vo
4
6
  module_path: httomolibgpu.recon.rotation
5
- - method: normalize
6
- module_path: httomolibgpu.prep.normalize
7
7
  - method: paganin_filter
8
8
  module_path: httomolibgpu.prep.phase
9
9
  sweep_parameter: ratio_delta_beta
@@ -1,11 +1,13 @@
1
1
  - method: standard_tomo
2
2
  module_path: httomo.data.hdf.loaders
3
+ - method: dark_flat_field_correction
4
+ module_path: httomolibgpu.prep.normalize
3
5
  - method: find_center_pc
4
6
  module_path: httomolibgpu.recon.rotation
5
- - method: normalize
6
- module_path: httomolibgpu.prep.normalize
7
7
  - method: remove_stripe_ti
8
8
  module_path: httomolibgpu.prep.stripe
9
+ - method: minus_log
10
+ module_path: httomolibgpu.prep.normalize
9
11
  - method: FBP3d_tomobar
10
12
  module_path: httomolibgpu.recon.algorithm
11
13
  - method: data_resampler
@@ -94,6 +94,7 @@ def yaml_pipelines_generator(
94
94
  with open(path_to_pipelines, "r") as file:
95
95
  try:
96
96
  pipeline_file_content = yaml.load(file)
97
+ # print(f"Loading pipeline: {file.name}") # useful for debugging
97
98
  except OSError as e:
98
99
  print("loading yaml file with methods failed", e)
99
100
 
@@ -227,17 +228,20 @@ def yaml_pipelines_generator(
227
228
  indent=0,
228
229
  )
229
230
  pipeline_full += yaml_template_method
230
- elif "normalize" in module_name:
231
+ elif "dark_flat_field_correction" in method_name:
231
232
  pipeline_full.yaml_set_comment_before_after_key(
232
233
  i,
233
- "--- Normalisation of projection data using collected flats/darks images. --- ",
234
+ "--- Flat-field and dark-field projection correction. --- ",
234
235
  indent=0,
235
236
  )
236
237
  pipeline_full += yaml_template_method
237
- pipeline_full[i]["parameters"].yaml_add_eol_comment(
238
- key="minus_log",
239
- comment="If Paganin method is used bellow, set it to 'false'.",
238
+ elif "minus_log" in method_name:
239
+ pipeline_full.yaml_set_comment_before_after_key(
240
+ i,
241
+ "--- Negative log is required for reconstruction to convert raw intensity measurements into the line integrals of attenuation. --- ",
242
+ indent=0,
240
243
  )
244
+ pipeline_full += yaml_template_method
241
245
  elif "phase" in module_name:
242
246
  pipeline_full.yaml_set_comment_before_after_key(
243
247
  i,
@@ -221,6 +221,11 @@ def _get_discard_keys() -> List[str]:
221
221
  "step_xy",
222
222
  "jpeg_quality",
223
223
  "watermark_vals",
224
+ "power_of_2_oversampling",
225
+ "power_of_2_cropping",
226
+ "min_mem_usage_filter",
227
+ "min_mem_usage_ifft2",
228
+ "calc_peak_gpu_mem",
224
229
  ]
225
230
  return discard_keys
226
231
 
@@ -15,3 +15,4 @@
15
15
  stop: null
16
16
  darks: null
17
17
  flats: null
18
+ continuous_scan_subset: null
@@ -0,0 +1,7 @@
1
+ - method: data_checker
2
+ module_path: httomolib.misc.utils
3
+ parameters:
4
+ infsnans_correct: true
5
+ zeros_warning: false
6
+ data_to_method_name: null
7
+ verbosity: true
@@ -0,0 +1,7 @@
1
+ - method: data_checker
2
+ module_path: httomolibgpu.misc.utils
3
+ parameters:
4
+ infsnans_correct: true
5
+ zeros_warning: false
6
+ data_to_method_name: null
7
+ verbosity: true
@@ -1,9 +1,6 @@
1
- - method: normalize
1
+ - method: dark_flat_field_correction
2
2
  module_path: httomolibgpu.prep.normalize
3
3
  parameters:
4
4
  flats_multiplier: 1.0
5
5
  darks_multiplier: 1.0
6
6
  cutoff: 10.0
7
- minus_log: true
8
- nonnegativity: false
9
- remove_nans: false
@@ -0,0 +1,3 @@
1
+ - method: minus_log
2
+ module_path: httomolibgpu.prep.normalize
3
+ parameters: {}
@@ -0,0 +1,7 @@
1
+ - method: paganin_filter_savu_legacy
2
+ module_path: httomolibgpu.prep.phase
3
+ parameters:
4
+ pixel_size: 1.28
5
+ distance: 1.0
6
+ energy: 53.0
7
+ ratio_delta_beta: 250
@@ -7,4 +7,3 @@
7
7
  recon_mask_radius: 0.95
8
8
  iterations: 20
9
9
  nonnegativity: true
10
- neglog: false
@@ -8,4 +8,3 @@
8
8
  filter_d: null
9
9
  recon_size: null
10
10
  recon_mask_radius: 0.95
11
- neglog: false
@@ -6,4 +6,3 @@
6
6
  filter_freq_cutoff: 0.35
7
7
  recon_size: null
8
8
  recon_mask_radius: 0.95
9
- neglog: false
@@ -12,4 +12,3 @@
12
12
  regularisation_iterations: 50
13
13
  regularisation_half_precision: true
14
14
  nonnegativity: true
15
- neglog: false
@@ -7,8 +7,3 @@
7
7
  filter_freq_cutoff: 1.0
8
8
  recon_size: null
9
9
  recon_mask_radius: 0.95
10
- power_of_2_oversampling: true
11
- power_of_2_cropping: false
12
- min_mem_usage_filter: true
13
- min_mem_usage_ifft2: true
14
- neglog: false
@@ -7,4 +7,3 @@
7
7
  recon_mask_radius: 0.95
8
8
  iterations: 300
9
9
  nonnegativity: true
10
- neglog: false
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: httomo-backends
3
- Version: 0.8.0
3
+ Version: 0.9.1
4
4
  Summary: Supplementary files for HTTomo backends.
5
5
  Author: Garry ODonnell, Jacob Williamson
6
6
  Author-email: Daniil Kazantsev <daniil.kazantsev@diamond.ac.uk>, Yousef Moazzam <yousef.moazzam@diamond.ac.uk>, Jessica Verschoyle <jessica.verschoyle@diamond.ac.uk>, Naman Gera <naman.gera@diamond.ac.uk>, scientificsoftware@diamond.ac.uk
@@ -67,6 +67,7 @@ httomo_backends/yaml_templates/httomolib/httomolib.misc.images/save_to_images.ya
67
67
  httomo_backends/yaml_templates/httomolib/httomolib.misc.morph/data_reducer.yaml
68
68
  httomo_backends/yaml_templates/httomolib/httomolib.misc.rescale/rescale_to_int.yaml
69
69
  httomo_backends/yaml_templates/httomolib/httomolib.misc.segm/binary_thresholding.yaml
70
+ httomo_backends/yaml_templates/httomolib/httomolib.misc.utils/data_checker.yaml
70
71
  httomo_backends/yaml_templates/httomolib/httomolib.prep.phase/paganin_filter.yaml
71
72
  httomo_backends/yaml_templates/httomolibgpu/__init__.py
72
73
  httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.corr/median_filter.yaml
@@ -76,9 +77,12 @@ httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.denoise/total_vari
76
77
  httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.morph/data_resampler.yaml
77
78
  httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.morph/sino_360_to_180.yaml
78
79
  httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.rescale/rescale_to_int.yaml
80
+ httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.utils/data_checker.yaml
79
81
  httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.alignment/distortion_correction_proj_discorpy.yaml
80
- httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.normalize/normalize.yaml
82
+ httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.normalize/dark_flat_field_correction.yaml
83
+ httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.normalize/minus_log.yaml
81
84
  httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.phase/paganin_filter.yaml
85
+ httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.phase/paganin_filter_savu_legacy.yaml
82
86
  httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.stripe/raven_filter.yaml
83
87
  httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.stripe/remove_all_stripe.yaml
84
88
  httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.stripe/remove_stripe_based_sorting.yaml
@@ -24,7 +24,7 @@ dev_template = "{tag}"
24
24
 
25
25
  [project]
26
26
  name = "httomo-backends"
27
- version = "0.8.0"
27
+ version = "0.9.1"
28
28
  description = "Supplementary files for HTTomo backends."
29
29
  readme = "README.rst"
30
30
  license = {text = "BSD-3-Clause"}