httomo-backends 0.6.1__tar.gz → 0.6.3__tar.gz

{httomo_backends-0.6.1 → httomo_backends-0.6.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: httomo-backends
-Version: 0.6.1
+Version: 0.6.3
 Summary: Supplementary files for HTTomo backends.
 Author: Garry ODonnell, Jacob Williamson
 Author-email: Daniil Kazantsev <daniil.kazantsev@diamond.ac.uk>, Yousef Moazzam <yousef.moazzam@diamond.ac.uk>, Jessica Verschoyle <jessica.verschoyle@diamond.ac.uk>, Naman Gera <naman.gera@diamond.ac.uk>, scientificsoftware@diamond.ac.uk

httomo_backends-0.6.3/httomo_backends/pipelines_full/titaren_center_pc_FBP3d_resample_directive.yaml

@@ -0,0 +1,18 @@
+- method: standard_tomo
+  module_path: httomo.data.hdf.loaders
+- method: find_center_pc
+  module_path: httomolibgpu.recon.rotation
+- method: normalize
+  module_path: httomolibgpu.prep.normalize
+- method: remove_stripe_ti
+  module_path: httomolibgpu.prep.stripe
+- method: FBP3d_tomobar
+  module_path: httomolibgpu.recon.algorithm
+- method: data_resampler
+  module_path: httomolibgpu.misc.morph
+- method: calculate_stats
+  module_path: httomo.methods
+- method: rescale_to_int
+  module_path: httomolib.misc.rescale
+- method: save_to_images
+  module_path: httomolib.misc.images

{httomo_backends-0.6.1 → httomo_backends-0.6.3}/httomo_backends/scripts/yaml_pipelines_generator.py

@@ -31,11 +31,14 @@ import ruamel.yaml
 import httomo_backends
 import yaml
 
-from httomo import __version__ as httomo_version
+try:
+    from httomo import __version__ as httomo_version
+except:
+    httomo_version = "2.6"  # temporary version fix for sphinx build
+    pass
 
 CS = ruamel.yaml.comments.CommentedSeq  # defaults to block style
 
-
 class SweepRange:
     """SweepRange class."""
 
@@ -213,6 +216,17 @@ def yaml_pipelines_generator(
                     key="metadata_path",
                     comment="Provide an absolute path to the text file with distortion coefficients.",
                 )
+            elif "data_resampler" in method_name:
+                pipeline_full.yaml_set_comment_before_after_key(
+                    i,
+                    "--- Down/up sampling the data. --- ",
+                    indent=0,
+                )
+                pipeline_full += yaml_template_method
+                pipeline_full[i]["parameters"].yaml_add_eol_comment(
+                    key="newshape",
+                    comment="Provide a new shape for a 2D slice, e.g. [256, 256].",
+                )
             elif "sino_360_to_180" in method_name:
                 pipeline_full.yaml_set_comment_before_after_key(
                     i,

{httomo_backends-0.6.1 → httomo_backends-0.6.3}/httomo_backends.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: httomo-backends
-Version: 0.6.1
+Version: 0.6.3
 Summary: Supplementary files for HTTomo backends.
 Author: Garry ODonnell, Jacob Williamson
 Author-email: Daniil Kazantsev <daniil.kazantsev@diamond.ac.uk>, Yousef Moazzam <yousef.moazzam@diamond.ac.uk>, Jessica Verschoyle <jessica.verschoyle@diamond.ac.uk>, Naman Gera <naman.gera@diamond.ac.uk>, scientificsoftware@diamond.ac.uk

{httomo_backends-0.6.1 → httomo_backends-0.6.3}/httomo_backends.egg-info/SOURCES.txt

@@ -50,6 +50,7 @@ httomo_backends/pipelines_full/deg360_distortion_FBP3d_tomobar_directive.yaml
 httomo_backends/pipelines_full/deg360_paganin_FBP3d_tomobar_directive.yaml
 httomo_backends/pipelines_full/sweep_center_FBP3d_tomobar_directive.yaml
 httomo_backends/pipelines_full/sweep_paganin_FBP3d_tomobar_directive.yaml
+httomo_backends/pipelines_full/titaren_center_pc_FBP3d_resample_directive.yaml
 httomo_backends/pipelines_full/tomopy_gridrec_directive.yaml
 httomo_backends/scripts/__init__.py
 httomo_backends/scripts/json_pipelines_generator.py

{httomo_backends-0.6.1 → httomo_backends-0.6.3}/pyproject.toml

@@ -24,7 +24,7 @@ dev_template = "{tag}"
 
 [project]
 name = "httomo-backends"
-version = "0.6.1"
+version = "0.6.3"
 description = "Supplementary files for HTTomo backends."
 readme = "README.rst"
 license = {text = "BSD-3-Clause"}