httomo-backends 0.5.2__tar.gz → 0.6__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {httomo_backends-0.5.2 → httomo_backends-0.6}/PKG-INFO +1 -1
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/httomolib/httomolib.yaml +8 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/httomolib/httomolib_modules.yaml +1 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/misc/rescale.py +5 -2
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/recon/algorithm.py +42 -21
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/misc/corr.py +1 -1
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/prep/stripe.py +1 -1
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/pipelines_full/FBP3d_tomobar_denoising_directive.yaml +1 -1
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/pipelines_full/FBP3d_tomobar_directive.yaml +1 -1
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/pipelines_full/LPRec3d_tomobar_directive.yaml +1 -1
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/pipelines_full/deg360_distortion_FBP3d_tomobar_directive.yaml +1 -1
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/pipelines_full/deg360_paganin_FBP3d_tomobar_directive.yaml +1 -1
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/pipelines_full/tomopy_gridrec_directive.yaml +1 -1
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/scripts/yaml_pipelines_generator.py +1 -1
- httomo_backends-0.6/httomo_backends/yaml_templates/httomolib/httomolib.misc.rescale/rescale_to_int.yaml +7 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.corr/remove_outlier.yaml +1 -1
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/CGLS3d_tomobar.yaml +1 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FBP2d_astra.yaml +1 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FBP3d_tomobar.yaml +1 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/LPRec3d_tomobar.yaml +1 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/SIRT3d_tomobar.yaml +1 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends.egg-info/PKG-INFO +1 -1
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends.egg-info/SOURCES.txt +1 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/pyproject.toml +1 -1
- {httomo_backends-0.5.2 → httomo_backends-0.6}/tests/test_httomolibgpu.py +56 -21
- {httomo_backends-0.5.2 → httomo_backends-0.6}/LICENSE +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/README.rst +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/__init__.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/cufft.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/__init__.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/__init__.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/httomolibgpu/__init__.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/httomolibgpu/httomolibgpu.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/httomolibgpu/httomolibgpu_modules.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/__init__.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/misc/__init__.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/misc/corr.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/misc/denoise.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/misc/morph.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/prep/__init__.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/prep/normalize.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/prep/phase.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/prep/stripe.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/recon/__init__.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/recon/peak_memory_line_profile_hook.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/tomopy/__init__.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/__init__.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/misc/__init__.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/prep/__init__.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/recon/__init__.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/recon/algorithm.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/tomopy/tomopy.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/backends/tomopy/tomopy_modules.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/httomo.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/query.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/pipelines_full/FBP2d_astra_directive.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/pipelines_full/FBP3d_tomobar_noimagesaving_directive.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/pipelines_full/__init__.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/pipelines_full/sweep_center_FBP3d_tomobar_directive.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/scripts/__init__.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/scripts/json_pipelines_generator.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/scripts/yaml_templates_generator.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/scripts/yaml_unsupported_tomopy_remove.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomo/__init__.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomo/httomo.data.hdf.loaders/standard_tomo.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomo/httomo.methods/calculate_stats.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomo/httomo.methods/save_intermediate_data.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolib/__init__.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolib/httomolib.misc.images/save_to_images.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolib/httomolib.misc.morph/data_reducer.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolib/httomolib.misc.segm/binary_thresholding.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolib/httomolib.prep.phase/paganin_filter.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolibgpu/__init__.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.corr/median_filter.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.denoise/total_variation_PD.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.denoise/total_variation_ROF.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.morph/data_resampler.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.morph/sino_360_to_180.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.rescale/rescale_to_int.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.alignment/distortion_correction_proj_discorpy.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.normalize/normalize.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.phase/paganin_filter_savu.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.phase/paganin_filter_tomopy.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.stripe/raven_filter.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.stripe/remove_all_stripe.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.stripe/remove_stripe_based_sorting.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.stripe/remove_stripe_ti.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.rotation/find_center_360.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.rotation/find_center_pc.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.rotation/find_center_vo.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/__init__.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/adjust_range.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/circ_mask.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/gaussian_filter.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/median_filter.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/median_filter3d.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/median_filter_nonfinite.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/remove_nan.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/remove_neg.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/remove_outlier.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/remove_outlier1d.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/remove_outlier3d.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/remove_ring.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/sobel_filter.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.misc.morph/downsample.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.misc.morph/pad.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.misc.morph/sino_360_to_180.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.misc.morph/trim_sinogram.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.misc.morph/upsample.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.alignment/add_jitter.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.alignment/add_noise.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.alignment/align_joint.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.alignment/align_seq.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.alignment/blur_edges.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.alignment/distortion_correction_proj.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.alignment/distortion_correction_sino.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.alignment/scale.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.alignment/shift_images.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.normalize/minus_log.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.normalize/normalize.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.normalize/normalize_bg.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.normalize/normalize_nf.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.normalize/normalize_roi.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.phase/retrieve_phase.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.stripe/remove_all_stripe.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.stripe/remove_dead_stripe.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.stripe/remove_large_stripe.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.stripe/remove_stripe_based_filtering.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.stripe/remove_stripe_based_fitting.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.stripe/remove_stripe_based_interpolation.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.stripe/remove_stripe_based_sorting.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.stripe/remove_stripe_fw.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.stripe/remove_stripe_sf.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.stripe/remove_stripe_ti.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.stripe/stripes_detect3d.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.prep.stripe/stripes_mask3d.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.recon.algorithm/recon.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.recon.rotation/find_center.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.recon.rotation/find_center_pc.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.recon.rotation/find_center_vo.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.sim.project/add_drift.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.sim.project/add_focal_spot_blur.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.sim.project/add_gaussian.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.sim.project/add_poisson.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.sim.project/add_rings.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.sim.project/add_salt_pepper.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.sim.project/add_zingers.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.sim.project/project.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.sim.project/project2.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/tomopy.sim.project/project3.yaml +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends.egg-info/dependency_links.txt +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends.egg-info/requires.txt +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends.egg-info/top_level.txt +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/setup.cfg +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/tests/test_method_query.py +0 -0
- {httomo_backends-0.5.2 → httomo_backends-0.6}/tests/test_tomopy.py +0 -0
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Author-email: Daniil Kazantsev <daniil.kazantsev@diamond.ac.uk>, Yousef Moazzam <yousef.moazzam@diamond.ac.uk>, Jessica Verschoyle <jessica.verschoyle@diamond.ac.uk>, Naman Gera <naman.gera@diamond.ac.uk>, scientificsoftware@diamond.ac.uk
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{httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/scripts/yaml_pipelines_generator.py
RENAMED
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Version: 0.
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Version: 0.6
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Summary: Supplementary files for HTTomo backends.
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Author: Garry ODonnell, Jacob Williamson
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Author-email: Daniil Kazantsev <daniil.kazantsev@diamond.ac.uk>, Yousef Moazzam <yousef.moazzam@diamond.ac.uk>, Jessica Verschoyle <jessica.verschoyle@diamond.ac.uk>, Naman Gera <naman.gera@diamond.ac.uk>, scientificsoftware@diamond.ac.uk
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projections,
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mocker: MockerFixture,
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589
|
+
@pytest.mark.parametrize("padding_detx", [0, 10, 50, 100])
|
|
588
590
|
@pytest.mark.parametrize("projections", [1500, 1801, 2560])
|
|
589
591
|
@pytest.mark.parametrize("detX_size", [2560])
|
|
590
592
|
@pytest.mark.parametrize("slices", [3, 4, 5, 10, 15, 20])
|
|
591
593
|
@pytest.mark.parametrize("projection_angle_range", [(0, np.pi)])
|
|
592
|
-
|
|
593
|
-
# @pytest.mark.parametrize("projections", [1500, 1801, 2560])
|
|
594
|
-
# @pytest.mark.parametrize("detX_size", [2560])
|
|
595
|
-
# @pytest.mark.parametrize("slices", [3, 4, 5, 10])
|
|
596
|
-
# @pytest.mark.parametrize("projection_angle_range", [(0, np.pi)])
|
|
597
594
|
def test_recon_LPRec3d_tomobar_0_pi_memoryhook(
|
|
598
|
-
slices,
|
|
595
|
+
slices,
|
|
596
|
+
detX_size,
|
|
597
|
+
projections,
|
|
598
|
+
projection_angle_range,
|
|
599
|
+
padding_detx,
|
|
600
|
+
ensure_clean_memory,
|
|
599
601
|
):
|
|
600
602
|
__test_recon_LPRec3d_tomobar_memoryhook_common(
|
|
601
|
-
slices,
|
|
603
|
+
slices,
|
|
604
|
+
detX_size,
|
|
605
|
+
projections,
|
|
606
|
+
projection_angle_range,
|
|
607
|
+
padding_detx,
|
|
608
|
+
ensure_clean_memory,
|
|
602
609
|
)
|
|
603
610
|
|
|
604
611
|
|
|
605
612
|
@pytest.mark.full
|
|
606
613
|
@pytest.mark.cupy
|
|
614
|
+
@pytest.mark.parametrize("padding_detx", [0, 10, 50, 100])
|
|
607
615
|
@pytest.mark.parametrize("projections", [1500, 1801, 2560, 3601])
|
|
608
616
|
@pytest.mark.parametrize("detX_size", [2560])
|
|
609
617
|
@pytest.mark.parametrize("slices", [3, 4, 5, 10, 15, 20])
|
|
610
618
|
@pytest.mark.parametrize("projection_angle_range", [(0, np.pi)])
|
|
611
619
|
def test_recon_LPRec3d_tomobar_0_pi_memoryhook_full(
|
|
612
|
-
slices,
|
|
620
|
+
slices,
|
|
621
|
+
detX_size,
|
|
622
|
+
projections,
|
|
623
|
+
projection_angle_range,
|
|
624
|
+
padding_detx,
|
|
625
|
+
ensure_clean_memory,
|
|
613
626
|
):
|
|
614
627
|
__test_recon_LPRec3d_tomobar_memoryhook_common(
|
|
615
|
-
slices,
|
|
628
|
+
slices,
|
|
629
|
+
detX_size,
|
|
630
|
+
projections,
|
|
631
|
+
projection_angle_range,
|
|
632
|
+
padding_detx,
|
|
633
|
+
ensure_clean_memory,
|
|
616
634
|
)
|
|
617
635
|
|
|
618
636
|
|
|
619
637
|
@pytest.mark.full
|
|
620
638
|
@pytest.mark.cupy
|
|
639
|
+
@pytest.mark.parametrize("padding_detx", [0, 10, 50, 100])
|
|
621
640
|
@pytest.mark.parametrize("projections", [1500, 1801, 2560, 3601])
|
|
622
641
|
@pytest.mark.parametrize("detX_size", [2560])
|
|
623
642
|
@pytest.mark.parametrize("slices", [3, 4, 5, 10, 15, 20])
|
|
@@ -625,15 +644,30 @@ def test_recon_LPRec3d_tomobar_0_pi_memoryhook_full(
|
|
|
625
644
|
"projection_angle_range", [(0, np.pi), (0, 2 * np.pi), (-np.pi / 2, np.pi / 2)]
|
|
626
645
|
)
|
|
627
646
|
def test_recon_LPRec3d_tomobar_memoryhook_full(
|
|
628
|
-
slices,
|
|
647
|
+
slices,
|
|
648
|
+
detX_size,
|
|
649
|
+
projections,
|
|
650
|
+
projection_angle_range,
|
|
651
|
+
padding_detx,
|
|
652
|
+
ensure_clean_memory,
|
|
629
653
|
):
|
|
630
654
|
__test_recon_LPRec3d_tomobar_memoryhook_common(
|
|
631
|
-
slices,
|
|
655
|
+
slices,
|
|
656
|
+
detX_size,
|
|
657
|
+
projections,
|
|
658
|
+
projection_angle_range,
|
|
659
|
+
padding_detx,
|
|
660
|
+
ensure_clean_memory,
|
|
632
661
|
)
|
|
633
662
|
|
|
634
663
|
|
|
635
664
|
def __test_recon_LPRec3d_tomobar_memoryhook_common(
|
|
636
|
-
slices,
|
|
665
|
+
slices,
|
|
666
|
+
detX_size,
|
|
667
|
+
projections,
|
|
668
|
+
projection_angle_range,
|
|
669
|
+
padding_detx,
|
|
670
|
+
ensure_clean_memory,
|
|
637
671
|
):
|
|
638
672
|
angles_number = projections
|
|
639
673
|
data = cp.random.random_sample((angles_number, slices, detX_size), dtype=np.float32)
|
|
@@ -642,6 +676,7 @@ def __test_recon_LPRec3d_tomobar_memoryhook_common(
|
|
|
642
676
|
projection_angle_range[0], projection_angle_range[1], data.shape[0]
|
|
643
677
|
)
|
|
644
678
|
kwargs["center"] = 1280
|
|
679
|
+
kwargs["detector_pad"] = padding_detx
|
|
645
680
|
kwargs["recon_size"] = detX_size
|
|
646
681
|
kwargs["recon_mask_radius"] = 0.8
|
|
647
682
|
|
|
@@ -687,9 +722,9 @@ def __test_recon_LPRec3d_tomobar_memoryhook_common(
|
|
|
687
722
|
if slices <= 3:
|
|
688
723
|
assert percents_relative_maxmem <= 75
|
|
689
724
|
elif slices <= 5:
|
|
690
|
-
assert percents_relative_maxmem <=
|
|
725
|
+
assert percents_relative_maxmem <= 63
|
|
691
726
|
else:
|
|
692
|
-
assert percents_relative_maxmem <=
|
|
727
|
+
assert percents_relative_maxmem <= 50
|
|
693
728
|
|
|
694
729
|
|
|
695
730
|
@pytest.mark.cupy
|
|
File without changes
|
|
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|
|
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|
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{httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/__init__.py
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{httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/methods_database/packages/httomo.yaml
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|
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|
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{httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/httomolib/__init__.py
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|
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|
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{httomo_backends-0.5.2 → httomo_backends-0.6}/httomo_backends/yaml_templates/tomopy/__init__.py
RENAMED
|
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|
|
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|
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|
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