hpvsim 2.2.0__tar.gz → 2.2.1__tar.gz

{hpvsim-2.2.0 → hpvsim-2.2.1}/CHANGELOG.rst

@@ -8,11 +8,18 @@ All notable changes to the codebase are documented in this file. Changes that ma
    :local:
    :depth: 1
 
+
+Version 2.2.1 (2025-05-29)
+---------------------------
+- Bugfix for running calibrations to prevent interventions being reinitialized
+- *Github info* PR `678 <https://github.com/starsimhub/hpvsim_orig/pull/678>`__
+
+
 Version 2.2.0 (2025-05-23)
 ---------------------------
 - Refresh results: ensure all main results are populated, remove cancer detection results, and fix bug with HPV prevalence calculations
 - Updates to docs
-- *Github info* PR `653 <https://github.com/starsimhub/hpvsim_orig/pull/673>`__
+- *Github info* PR `673 <https://github.com/starsimhub/hpvsim_orig/pull/673>`__
 
 
 Version 2.1.0 (2025-03-25)

{hpvsim-2.2.0/hpvsim.egg-info → hpvsim-2.2.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: hpvsim
-Version: 2.2.0
+Version: 2.2.1
 Summary: HPVsim: Human Papillomavirus Simulator
 Author: Robyn Stuart, Jamie Cohen, Cliff Kerr, Romesh Abeysuriya, Mariah Boudreau, Daniel Klein, Hao Hu
 Maintainer-email: HPVsim Team <info@hpvsim.org>

{hpvsim-2.2.0 → hpvsim-2.2.1}/hpvsim/calibration.py

@@ -133,7 +133,7 @@ class Calibration(sc.prettyobj):
         self.sim['analyzers'] += [ar]
         if hiv_pars is not None:
             self.sim['model_hiv'] = True # if calibrating HIV parameters, make sure model is running HIV
-        self.sim.initialize()
+        self.sim.initialize(init_intvs=False)
         if self.sim['model_hiv']:
             self.sim.results = sc.mergedicts(self.sim.results, self.sim.hivsim.results)
         for rkey in sim_results.keys():

{hpvsim-2.2.0 → hpvsim-2.2.1}/hpvsim/sim.py

@@ -74,7 +74,7 @@ class Sim(hpb.BaseSim):
         return
 
 
-    def initialize(self, reset=True, init_states=True, init_analyzers=True, **kwargs):
+    def initialize(self, reset=True, init_states=True, init_intvs=True, init_analyzers=True, **kwargs):
         '''
         Perform all initializations on the sim.
         '''
@@ -85,7 +85,7 @@ class Sim(hpb.BaseSim):
         hpu.set_seed(self['rand_seed']) # Reset the random seed before the population is created
         self.init_genotypes() # Initialize the genotypes
         self.init_results() # After initializing the genotypes and people, create the results structure
-        self.init_interventions()  # Initialize the interventions BEFORE the people, because then vaccination interventions get counted in immunity structures
+        if init_intvs: self.init_interventions()  # Initialize the interventions BEFORE the people, because then vaccination interventions get counted in immunity structures
         self.init_immunity() # Includes immunity matrices and cumulative dysplasia arrays
         self.init_people(reset=reset, init_states=init_states, **kwargs) # Create all the people (the heaviest step)
         if init_analyzers: self.init_analyzers()  # ...and the analyzers...

{hpvsim-2.2.0 → hpvsim-2.2.1}/hpvsim/version.py

@@ -4,6 +4,6 @@ Version and license information.
 
 __all__ = ['__version__', '__versiondate__', '__license__']
 
-__version__ = '2.2.0'
-__versiondate__ = '2025-05-23'
+__version__ = '2.2.1'
+__versiondate__ = '2025-05-29'
 __license__ = f'HPVsim {__version__} ({__versiondate__}) — © 2023-2025 by IDM'

{hpvsim-2.2.0 → hpvsim-2.2.1/hpvsim.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: hpvsim
-Version: 2.2.0
+Version: 2.2.1
 Summary: HPVsim: Human Papillomavirus Simulator
 Author: Robyn Stuart, Jamie Cohen, Cliff Kerr, Romesh Abeysuriya, Mariah Boudreau, Daniel Klein, Hao Hu
 Maintainer-email: HPVsim Team <info@hpvsim.org>