hpcflow-new2 0.2.0a65__tar.gz → 0.2.0a67__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (107) hide show
  1. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/PKG-INFO +3 -3
  2. hpcflow_new2-0.2.0a67/hpcflow/_version.py +1 -0
  3. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/core/task.py +1 -1
  4. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/pyproject.toml +4 -4
  5. hpcflow_new2-0.2.0a65/hpcflow/_version.py +0 -1
  6. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/README.md +0 -0
  7. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/__init__.py +0 -0
  8. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/__pyinstaller/__init__.py +0 -0
  9. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/__pyinstaller/hook-hpcflow.py +0 -0
  10. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/app.py +0 -0
  11. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/cli.py +0 -0
  12. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/examples.ipynb +0 -0
  13. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/__init__.py +0 -0
  14. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/api.py +0 -0
  15. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/app.py +0 -0
  16. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/cli.py +0 -0
  17. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/config/__init__.py +0 -0
  18. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/config/callbacks.py +0 -0
  19. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/config/cli.py +0 -0
  20. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/config/config.py +0 -0
  21. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/config/config_file.py +0 -0
  22. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/config/errors.py +0 -0
  23. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/core/__init__.py +0 -0
  24. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/core/actions.py +0 -0
  25. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/core/command_files.py +0 -0
  26. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/core/commands.py +0 -0
  27. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/core/element.py +0 -0
  28. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/core/environment.py +0 -0
  29. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/core/errors.py +0 -0
  30. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/core/json_like.py +0 -0
  31. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/core/loop.py +0 -0
  32. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/core/object_list.py +0 -0
  33. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/core/parameters.py +0 -0
  34. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/core/task_schema.py +0 -0
  35. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/core/test_utils.py +0 -0
  36. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/core/utils.py +0 -0
  37. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/core/validation.py +0 -0
  38. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/core/workflow.py +0 -0
  39. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/core/zarr_io.py +0 -0
  40. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/data/__init__.py +0 -0
  41. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/data/config_file_schema.yaml +0 -0
  42. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/data/config_schema.yaml +0 -0
  43. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/data/environments_spec_schema.yaml +0 -0
  44. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/data/files_spec_schema.yaml +0 -0
  45. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/data/parameters_spec_schema.yaml +0 -0
  46. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/data/task_schema_spec_schema.yaml +0 -0
  47. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/data/template_components/__init__.py +0 -0
  48. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/data/template_components/command_files.yaml +0 -0
  49. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/data/template_components/environments.yaml +0 -0
  50. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/data/template_components/parameters.yaml +0 -0
  51. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/data/template_components/task_schemas.yaml +0 -0
  52. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/data/workflow_spec_schema.yaml +0 -0
  53. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/demo/__init__.py +0 -0
  54. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/demo/cli.py +0 -0
  55. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/demo/scripts/__init__.py +0 -0
  56. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/demo/scripts/demo_task_1_generate_t1_infile_1.py +0 -0
  57. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/demo/scripts/demo_task_1_generate_t1_infile_2.py +0 -0
  58. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/demo/scripts/demo_task_1_parse_p3.py +0 -0
  59. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/demo/scripts/generate_t1_file_01.py +0 -0
  60. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/demo/scripts/parse_t1_file_01.py +0 -0
  61. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/demo/scripts/test_main_script.py +0 -0
  62. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/helper/__init__.py +0 -0
  63. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/helper/cli.py +0 -0
  64. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/helper/helper.py +0 -0
  65. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/helper/watcher.py +0 -0
  66. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/log.py +0 -0
  67. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/persistence/__init__.py +0 -0
  68. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/persistence/base.py +0 -0
  69. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/persistence/json.py +0 -0
  70. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/persistence/pending.py +0 -0
  71. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/persistence/store_resource.py +0 -0
  72. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/persistence/utils.py +0 -0
  73. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/persistence/zarr.py +0 -0
  74. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/runtime.py +0 -0
  75. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/scripting/__init__.py +0 -0
  76. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/submission/__init__.py +0 -0
  77. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/submission/jobscript.py +0 -0
  78. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/submission/jobscript_info.py +0 -0
  79. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/submission/schedulers/__init__.py +0 -0
  80. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/submission/schedulers/direct.py +0 -0
  81. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/submission/schedulers/sge.py +0 -0
  82. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/submission/schedulers/slurm.py +0 -0
  83. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/submission/schedulers/utils.py +0 -0
  84. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/submission/shells/__init__.py +0 -0
  85. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/submission/shells/base.py +0 -0
  86. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/submission/shells/bash.py +0 -0
  87. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/submission/shells/os_version.py +0 -0
  88. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/submission/shells/powershell.py +0 -0
  89. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/submission/submission.py +0 -0
  90. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/typing.py +0 -0
  91. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/tests/unit/test_action.py +0 -0
  92. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/tests/unit/test_app.py +0 -0
  93. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/tests/unit/test_cli.py +0 -0
  94. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/tests/unit/test_element.py +0 -0
  95. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/tests/unit/test_element_set.py +0 -0
  96. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/tests/unit/test_input_source.py +0 -0
  97. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/tests/unit/test_input_value.py +0 -0
  98. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/tests/unit/test_json_like.py +0 -0
  99. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/tests/unit/test_loop.py +0 -0
  100. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/tests/unit/test_object_list.py +0 -0
  101. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/tests/unit/test_persistence.py +0 -0
  102. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/tests/unit/test_submission.py +0 -0
  103. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/tests/unit/test_task.py +0 -0
  104. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/tests/unit/test_task_schema.py +0 -0
  105. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/tests/unit/test_utils.py +0 -0
  106. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/tests/unit/test_workflow.py +0 -0
  107. {hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/viz_demo.ipynb +0 -0
{hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/PKG-INFO RENAMED
@@ -1,11 +1,11 @@
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  Metadata-Version: 2.1
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  Name: hpcflow-new2
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- Version: 0.2.0a65
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+ Version: 0.2.0a67
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  Summary: Computational workflow management
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  License: MIT
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  Author: aplowman
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  Author-email: adam.plowman@manchester.ac.uk
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- Requires-Python: >=3.8,<3.12
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+ Requires-Python: >=3.8,<3.13
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  Classifier: License :: OSI Approved :: MIT License
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  Classifier: Programming Language :: Python :: 3
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  Classifier: Programming Language :: Python :: 3.8
@@ -28,7 +28,7 @@ Requires-Dist: rich (>=13.4.2,<14.0.0)
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  Requires-Dist: ruamel.yaml (>=0.17.20,<0.18.0)
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  Requires-Dist: sentry-sdk (>=1.5.8,<2.0.0)
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  Requires-Dist: termcolor (>=1.1.0,<2.0.0)
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- Requires-Dist: valida (>=0.7.0,<0.8.0)
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+ Requires-Dist: valida (>=0.7.1,<0.8.0)
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  Requires-Dist: watchdog (>=2.1.9,<3.0.0)
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  Requires-Dist: zarr (>=2.14.2,<3.0.0)
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  Description-Content-Type: text/markdown
hpcflow_new2-0.2.0a67/hpcflow/_version.py ADDED
@@ -0,0 +1 @@
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+ __version__ = "0.2.0a67"
{hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/hpcflow/sdk/core/task.py RENAMED
@@ -1920,7 +1920,7 @@ class WorkflowTask:
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  else:
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  current_value = default
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- if parameter and parameter._value_class:
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+ if parameter and isinstance(current_value, dict) and parameter._value_class:
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  current_value = parameter._value_class(**current_value)
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  return current_value
{hpcflow_new2-0.2.0a65 → hpcflow_new2-0.2.0a67}/pyproject.toml RENAMED
@@ -1,7 +1,7 @@
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  [tool.poetry]
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  name = "hpcflow-new2"
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- version = "0.2.0a65"
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  description = "Computational workflow management"
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  authors = ["aplowman <adam.plowman@manchester.ac.uk>"]
@@ -12,7 +12,7 @@ packages = [
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  ]
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  [tool.poetry.dependencies]
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- python = ">=3.8,<3.12"
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+ python = ">=3.8,<3.13"
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  zarr = "^2.14.2"
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  "ruamel.yaml" = "^0.17.20"
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  colorama = "^0.4.6"
@@ -26,7 +26,7 @@ msgpack = "^1.0.4"
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  reretry = "^0.11.8"
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  psutil = "^5.9.4"
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  watchdog = "^2.1.9"
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- valida = "^0.7.0"
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+ valida = "^0.7.1"
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  paramiko = "^3.2.0"
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  aiohttp = "^3.8.4"
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  rich = "^13.4.2"
@@ -65,7 +65,7 @@ hook-dirs = "hpcflow.__pyinstaller:get_hook_dirs"
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  [tool.commitizen]
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  name = "cz_conventional_commits"
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- version = "0.2.0a65"
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+ version = "0.2.0a67"
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  tag_format = "v$version"
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  version_files = [
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  "pyproject.toml:version",
hpcflow_new2-0.2.0a65/hpcflow/_version.py DELETED
@@ -1 +0,0 @@
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- __version__ = "0.2.0a65"