hpcflow-new2 0.2.0a202__tar.gz → 0.2.0a204__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (222) hide show
  1. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/PKG-INFO +6 -3
  2. hpcflow_new2-0.2.0a204/hpcflow/_version.py +1 -0
  3. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/app.py +20 -20
  4. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/parameters.py +5 -5
  5. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/pyproject.toml +13 -6
  6. hpcflow_new2-0.2.0a202/hpcflow/_version.py +0 -1
  7. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/LICENSE +0 -0
  8. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/README.md +0 -0
  9. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/__init__.py +0 -0
  10. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/__pyinstaller/__init__.py +0 -0
  11. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/__pyinstaller/hook-hpcflow.py +0 -0
  12. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/app.py +0 -0
  13. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/cli.py +0 -0
  14. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/demo_data_manifest/__init__.py +0 -0
  15. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/demo_data_manifest/demo_data_manifest.json +0 -0
  16. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/__init__.py +0 -0
  17. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/bad_script.py +0 -0
  18. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/demo_task_1_generate_t1_infile_1.py +0 -0
  19. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/demo_task_1_generate_t1_infile_2.py +0 -0
  20. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/demo_task_1_parse_p3.py +0 -0
  21. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/do_nothing.py +0 -0
  22. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/env_specifier_test/input_file_generator_pass_env_spec.py +0 -0
  23. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/env_specifier_test/main_script_test_pass_env_spec.py +0 -0
  24. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/env_specifier_test/output_file_parser_pass_env_spec.py +0 -0
  25. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/env_specifier_test/v1/input_file_generator_basic.py +0 -0
  26. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/env_specifier_test/v1/main_script_test_direct_in_direct_out.py +0 -0
  27. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/env_specifier_test/v1/output_file_parser_basic.py +0 -0
  28. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/env_specifier_test/v2/main_script_test_direct_in_direct_out.py +0 -0
  29. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/generate_t1_file_01.py +0 -0
  30. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/input_file_generator_basic.py +0 -0
  31. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/input_file_generator_basic_FAIL.py +0 -0
  32. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/input_file_generator_test_stdout_stderr.py +0 -0
  33. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_direct_in.py +0 -0
  34. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_direct_in_direct_out.py +0 -0
  35. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_direct_in_direct_out_2.py +0 -0
  36. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_direct_in_direct_out_2_fail_allowed.py +0 -0
  37. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_direct_in_direct_out_2_fail_allowed_group.py +0 -0
  38. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_direct_in_direct_out_3.py +0 -0
  39. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_direct_in_direct_out_all_iters_test.py +0 -0
  40. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_direct_in_direct_out_env_spec.py +0 -0
  41. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_direct_in_direct_out_labels.py +0 -0
  42. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_direct_in_group_direct_out_3.py +0 -0
  43. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_direct_in_group_one_fail_direct_out_3.py +0 -0
  44. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_direct_sub_param_in_direct_out.py +0 -0
  45. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_hdf5_in_obj.py +0 -0
  46. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_hdf5_in_obj_2.py +0 -0
  47. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_hdf5_out_obj.py +0 -0
  48. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_json_and_direct_in_json_out.py +0 -0
  49. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_json_in_json_and_direct_out.py +0 -0
  50. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_json_in_json_out.py +0 -0
  51. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_json_in_json_out_labels.py +0 -0
  52. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_json_in_obj.py +0 -0
  53. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_json_out_FAIL.py +0 -0
  54. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_json_out_obj.py +0 -0
  55. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_json_sub_param_in_json_out_labels.py +0 -0
  56. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_shell_env_vars.py +0 -0
  57. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/main_script_test_std_out_std_err.py +0 -0
  58. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/output_file_parser_basic.py +0 -0
  59. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/output_file_parser_basic_FAIL.py +0 -0
  60. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/output_file_parser_test_stdout_stderr.py +0 -0
  61. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/parse_t1_file_01.py +0 -0
  62. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/scripts/script_exit_test.py +0 -0
  63. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/template_components/__init__.py +0 -0
  64. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/template_components/command_files.yaml +0 -0
  65. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/template_components/environments.yaml +0 -0
  66. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/template_components/parameters.yaml +0 -0
  67. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/template_components/task_schemas.yaml +0 -0
  68. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/workflows/__init__.py +0 -0
  69. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/data/workflows/workflow_1.yaml +0 -0
  70. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/examples.ipynb +0 -0
  71. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/__init__.py +0 -0
  72. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/cli.py +0 -0
  73. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/cli_common.py +0 -0
  74. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/config/__init__.py +0 -0
  75. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/config/callbacks.py +0 -0
  76. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/config/cli.py +0 -0
  77. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/config/config.py +0 -0
  78. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/config/config_file.py +0 -0
  79. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/config/errors.py +0 -0
  80. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/config/types.py +0 -0
  81. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/__init__.py +0 -0
  82. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/actions.py +0 -0
  83. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/app_aware.py +0 -0
  84. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/cache.py +0 -0
  85. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/command_files.py +0 -0
  86. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/commands.py +0 -0
  87. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/element.py +0 -0
  88. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/enums.py +0 -0
  89. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/environment.py +0 -0
  90. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/errors.py +0 -0
  91. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/execute.py +0 -0
  92. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/json_like.py +0 -0
  93. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/loop.py +0 -0
  94. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/loop_cache.py +0 -0
  95. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/object_list.py +0 -0
  96. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/rule.py +0 -0
  97. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/run_dir_files.py +0 -0
  98. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/skip_reason.py +0 -0
  99. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/task.py +0 -0
  100. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/task_schema.py +0 -0
  101. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/test_utils.py +0 -0
  102. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/types.py +0 -0
  103. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/utils.py +0 -0
  104. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/validation.py +0 -0
  105. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/workflow.py +0 -0
  106. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/core/zarr_io.py +0 -0
  107. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/data/__init__.py +0 -0
  108. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/data/config_file_schema.yaml +0 -0
  109. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/data/config_schema.yaml +0 -0
  110. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/data/environments_spec_schema.yaml +0 -0
  111. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/data/files_spec_schema.yaml +0 -0
  112. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/data/parameters_spec_schema.yaml +0 -0
  113. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/data/task_schema_spec_schema.yaml +0 -0
  114. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/data/workflow_spec_schema.yaml +0 -0
  115. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/demo/__init__.py +0 -0
  116. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/demo/cli.py +0 -0
  117. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/helper/__init__.py +0 -0
  118. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/helper/cli.py +0 -0
  119. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/helper/helper.py +0 -0
  120. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/helper/watcher.py +0 -0
  121. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/log.py +0 -0
  122. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/persistence/__init__.py +0 -0
  123. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/persistence/base.py +0 -0
  124. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/persistence/defaults.py +0 -0
  125. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/persistence/discovery.py +0 -0
  126. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/persistence/json.py +0 -0
  127. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/persistence/pending.py +0 -0
  128. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/persistence/store_resource.py +0 -0
  129. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/persistence/types.py +0 -0
  130. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/persistence/utils.py +0 -0
  131. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/persistence/zarr.py +0 -0
  132. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/runtime.py +0 -0
  133. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/submission/__init__.py +0 -0
  134. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/submission/enums.py +0 -0
  135. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/submission/jobscript.py +0 -0
  136. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/submission/schedulers/__init__.py +0 -0
  137. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/submission/schedulers/direct.py +0 -0
  138. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/submission/schedulers/sge.py +0 -0
  139. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/submission/schedulers/slurm.py +0 -0
  140. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/submission/schedulers/utils.py +0 -0
  141. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/submission/shells/__init__.py +0 -0
  142. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/submission/shells/base.py +0 -0
  143. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/submission/shells/bash.py +0 -0
  144. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/submission/shells/os_version.py +0 -0
  145. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/submission/shells/powershell.py +0 -0
  146. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/submission/submission.py +0 -0
  147. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/submission/types.py +0 -0
  148. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/typing.py +0 -0
  149. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/utils/arrays.py +0 -0
  150. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/utils/deferred_file.py +0 -0
  151. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/utils/hashing.py +0 -0
  152. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/utils/patches.py +0 -0
  153. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/sdk/utils/strings.py +0 -0
  154. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/api/test_api.py +0 -0
  155. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/conftest.py +0 -0
  156. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/data/__init__.py +0 -0
  157. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/data/benchmark_N_elements.yaml +0 -0
  158. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/data/benchmark_script_runner.yaml +0 -0
  159. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/data/multi_path_sequences.yaml +0 -0
  160. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/data/workflow_1.json +0 -0
  161. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/data/workflow_1.yaml +0 -0
  162. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/data/workflow_1_slurm.yaml +0 -0
  163. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/data/workflow_1_wsl.yaml +0 -0
  164. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/data/workflow_test_run_abort.yaml +0 -0
  165. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/schedulers/direct_linux/test_direct_linux_submission.py +0 -0
  166. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/schedulers/sge/test_sge_submission.py +0 -0
  167. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/schedulers/slurm/test_slurm_submission.py +0 -0
  168. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/scripts/test_input_file_generators.py +0 -0
  169. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/scripts/test_main_scripts.py +0 -0
  170. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/scripts/test_non_snippet_script.py +0 -0
  171. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/scripts/test_ouput_file_parsers.py +0 -0
  172. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/shells/wsl/test_wsl_submission.py +0 -0
  173. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_action.py +0 -0
  174. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_action_rule.py +0 -0
  175. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_app.py +0 -0
  176. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_cache.py +0 -0
  177. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_cli.py +0 -0
  178. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_command.py +0 -0
  179. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_config.py +0 -0
  180. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_config_file.py +0 -0
  181. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_element.py +0 -0
  182. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_element_iteration.py +0 -0
  183. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_element_set.py +0 -0
  184. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_group.py +0 -0
  185. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_input_source.py +0 -0
  186. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_input_value.py +0 -0
  187. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_jobscript_unit.py +0 -0
  188. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_json_like.py +0 -0
  189. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_loop.py +0 -0
  190. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_meta_task.py +0 -0
  191. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_multi_path_sequences.py +0 -0
  192. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_object_list.py +0 -0
  193. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_parameter.py +0 -0
  194. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_persistence.py +0 -0
  195. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_resources.py +0 -0
  196. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_run.py +0 -0
  197. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_run_directories.py +0 -0
  198. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_runtime.py +0 -0
  199. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_schema_input.py +0 -0
  200. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_shell.py +0 -0
  201. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_slurm.py +0 -0
  202. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_submission.py +0 -0
  203. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_task.py +0 -0
  204. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_task_schema.py +0 -0
  205. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_utils.py +0 -0
  206. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_value_sequence.py +0 -0
  207. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_workflow.py +0 -0
  208. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/test_workflow_template.py +0 -0
  209. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/utils/test_arrays.py +0 -0
  210. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/utils/test_deferred_file_writer.py +0 -0
  211. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/utils/test_hashing.py +0 -0
  212. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/utils/test_patches.py +0 -0
  213. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/unit/utils/test_redirect_std.py +0 -0
  214. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/workflows/__init__.py +0 -0
  215. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/workflows/test_directory_structure.py +0 -0
  216. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/workflows/test_jobscript.py +0 -0
  217. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/workflows/test_run_status.py +0 -0
  218. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/workflows/test_skip_downstream.py +0 -0
  219. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/workflows/test_submission.py +0 -0
  220. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/workflows/test_workflows.py +0 -0
  221. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/tests/workflows/test_zip.py +0 -0
  222. {hpcflow_new2-0.2.0a202 → hpcflow_new2-0.2.0a204}/hpcflow/viz_demo.ipynb +0 -0
@@ -1,11 +1,11 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: hpcflow-new2
3
- Version: 0.2.0a202
3
+ Version: 0.2.0a204
4
4
  Summary: Computational workflow management
5
5
  License: MPL-2.0
6
6
  Author: aplowman
7
7
  Author-email: adam.plowman@manchester.ac.uk
8
- Requires-Python: >=3.9,<3.13
8
+ Requires-Python: >=3.9,<3.14
9
9
  Classifier: License :: OSI Approved
10
10
  Classifier: Programming Language :: Python :: 3
11
11
  Classifier: Programming Language :: Python :: 3.9
@@ -18,7 +18,10 @@ Requires-Dist: colorama (>=0.4.6,<0.5.0)
18
18
  Requires-Dist: fsspec (>=2022.2.0,<2023.0.0)
19
19
  Requires-Dist: h5py (>=3.9.0,<4.0.0)
20
20
  Requires-Dist: msgpack (>=1.0.4,<2.0.0)
21
- Requires-Dist: numpy (>=1.26.4,<2.0.0)
21
+ Requires-Dist: numcodecs (==0.12.1) ; python_version < "3.13"
22
+ Requires-Dist: numcodecs (>=0.13.1,<0.14.0) ; python_version >= "3.13"
23
+ Requires-Dist: numpy (>=1.26.4,<2.0.0) ; python_version < "3.13"
24
+ Requires-Dist: numpy (>=2.2.4,<3.0.0) ; python_version >= "3.13"
22
25
  Requires-Dist: paramiko (>=3.2.0,<4.0.0)
23
26
  Requires-Dist: platformdirs (>=4.2.1,<5.0.0)
24
27
  Requires-Dist: psutil (>=5.9.4,<6.0.0)
@@ -0,0 +1 @@
1
+ __version__ = "0.2.0a204"
@@ -3580,27 +3580,27 @@ class BaseApp(metaclass=Singleton):
3580
3580
  style_wk_name = "grey42 strike" if deleted else style
3581
3581
  style_it = "italic grey42" if (no_access or not act_js) else "italic"
3582
3582
 
3583
- all_cells: dict[str, str | Text | Padding] = {}
3584
- if "status" in columns:
3585
- if act_js:
3586
- act_js_states = set(
3587
- state_i
3588
- for js_dat in act_js.values()
3589
- for block_dat in js_dat.values()
3590
- for state_i in block_dat.values()
3591
- )
3592
- all_cells["status"] = "/".join(
3593
- js_state.rich_repr
3594
- for js_state in sorted(act_js_states, key=lambda x: x.value)
3595
- )
3596
- else:
3597
- if deleted:
3598
- txt = "deleted"
3599
- elif unloadable:
3600
- txt = "unloadable"
3583
+ all_cells: dict[str, str | Text | Padding] = {}
3584
+ if "status" in columns:
3585
+ if act_js:
3586
+ act_js_states = set(
3587
+ state_i
3588
+ for js_dat in act_js.values()
3589
+ for block_dat in js_dat.values()
3590
+ for state_i in block_dat.values()
3591
+ )
3592
+ all_cells["status"] = "/".join(
3593
+ js_state.rich_repr
3594
+ for js_state in sorted(act_js_states, key=lambda x: x.value)
3595
+ )
3601
3596
  else:
3602
- txt = "inactive"
3603
- all_cells["status"] = Text(txt, style=style_it)
3597
+ if deleted:
3598
+ txt = "deleted"
3599
+ elif unloadable:
3600
+ txt = "unloadable"
3601
+ else:
3602
+ txt = "inactive"
3603
+ all_cells["status"] = Text(txt, style=style_it)
3604
3604
 
3605
3605
  if "id" in columns:
3606
3606
  all_cells["id"] = Text(str(dat_i["local_id"]), style=style)
@@ -1152,19 +1152,19 @@ class ValueSequence(_BaseSequence):
1152
1152
  def _values_from_geometric_space(
1153
1153
  cls, start: float, stop: float, num: int, **kwargs
1154
1154
  ) -> list[float]:
1155
- return np.geomspace(start, stop, num=num, **kwargs).tolist()
1155
+ return np.geomspace(start, stop, num=num, **kwargs).tolist() # type: ignore # mypy bug for numpy~2.2.4 https://github.com/numpy/numpy/issues/27944
1156
1156
 
1157
1157
  @classmethod
1158
1158
  def _values_from_log_space(
1159
1159
  cls, start: float, stop: float, num: int, base: float = 10.0, **kwargs
1160
1160
  ) -> list[float]:
1161
- return np.logspace(start, stop, num=num, base=base, **kwargs).tolist()
1161
+ return np.logspace(start, stop, num=num, base=base, **kwargs).tolist() # type: ignore # mypy bug for numpy~2.2.4 https://github.com/numpy/numpy/issues/27944
1162
1162
 
1163
1163
  @classmethod
1164
1164
  def _values_from_range(
1165
1165
  cls, start: int | float, stop: int | float, step: int | float, **kwargs
1166
1166
  ) -> list[float]:
1167
- return np.arange(start, stop, step, **kwargs).tolist()
1167
+ return np.arange(start, stop, step, **kwargs).tolist() # type: ignore # mypy bug for numpy~2.2.4 https://github.com/numpy/numpy/issues/27944
1168
1168
 
1169
1169
  @classmethod
1170
1170
  def _values_from_file(cls, file_path: str | Path) -> list[str]:
@@ -1185,7 +1185,7 @@ class ValueSequence(_BaseSequence):
1185
1185
  if coord is not None:
1186
1186
  return vals[coord].tolist()
1187
1187
  else:
1188
- return (vals.T).tolist()
1188
+ return (vals.T).tolist() # type: ignore # mypy bug for numpy~2.2.4 https://github.com/numpy/numpy/issues/27944
1189
1189
 
1190
1190
  @classmethod
1191
1191
  def _values_from_random_uniform(
@@ -1196,7 +1196,7 @@ class ValueSequence(_BaseSequence):
1196
1196
  seed: int | list[int] | None = None,
1197
1197
  ) -> list[float]:
1198
1198
  rng = np.random.default_rng(seed)
1199
- return rng.uniform(low=low, high=high, size=num).tolist()
1199
+ return rng.uniform(low=low, high=high, size=num).tolist() # type: ignore # mypy bug for numpy~2.2.4 https://github.com/numpy/numpy/issues/27944
1200
1200
 
1201
1201
  @classmethod
1202
1202
  def from_linear_space(
@@ -1,7 +1,7 @@
1
1
 
2
2
  [tool.poetry]
3
3
  name = "hpcflow-new2"
4
- version = "0.2.0a202"
4
+ version = "0.2.0a204"
5
5
 
6
6
  description = "Computational workflow management"
7
7
  authors = ["aplowman <adam.plowman@manchester.ac.uk>"]
@@ -13,9 +13,12 @@ packages = [
13
13
  exclude = ["hpcflow/data/demo_data"]
14
14
 
15
15
  [tool.poetry.dependencies]
16
- python = ">=3.9,<3.13"
16
+ python = ">=3.9,<3.14"
17
17
  zarr = "2.17.2"
18
- numpy = "^1.26.4"
18
+ numpy = [
19
+ {version = "^1.26.4", python = "<3.13"},
20
+ {version = "^2.2.4", python = ">=3.13"},
21
+ ]
19
22
  scipy = [
20
23
  {version = "^1.13.1", python = "<3.10"},
21
24
  {version = "^1.15.2", python = ">=3.10"},
@@ -39,6 +42,10 @@ requests = "^2.31.0"
39
42
  platformdirs = "^4.2.1"
40
43
  pyzmq = "^26.0.3"
41
44
  typing-extensions = "^4.12.2"
45
+ numcodecs = [
46
+ {version = "0.12.1", python = "<3.13"},
47
+ {version = "^0.13.1", python = ">=3.13"},
48
+ ]
42
49
 
43
50
  [tool.poetry.group.dev.dependencies]
44
51
  pylint = "^2.12.2"
@@ -67,7 +74,7 @@ papermill = "^2.6.0"
67
74
  ipykernel = "^6.25.1"
68
75
 
69
76
  [tool.poetry.group.pyinstaller.dependencies]
70
- pyinstaller = "^6.9.0"
77
+ pyinstaller = "^6.12.0"
71
78
 
72
79
  [tool.poetry.group.typecheck]
73
80
  optional = true
@@ -75,7 +82,7 @@ optional = true
75
82
  types-colorama = "^0.4.15.20240311"
76
83
  types-paramiko = "^3.4.0.20240423"
77
84
  types-psutil = "^6.0.0.20240621"
78
- types-pyinstaller = "^6.8.0.20240626"
85
+ types-pyinstaller = "^6.11.0.20241028"
79
86
  types-requests = "^2.32.0.20240622"
80
87
  types-setuptools = "^70.2.0.20240704"
81
88
  mypy = "^1.10.1"
@@ -93,7 +100,7 @@ hook-dirs = "hpcflow.__pyinstaller:get_hook_dirs"
93
100
 
94
101
  [tool.commitizen]
95
102
  name = "cz_conventional_commits"
96
- version = "0.2.0a202"
103
+ version = "0.2.0a204"
97
104
  tag_format = "v$version"
98
105
  version_files = [
99
106
  "pyproject.toml:version",
@@ -1 +0,0 @@
1
- __version__ = "0.2.0a202"