hpcflow-new2 0.2.0a187__tar.gz → 0.2.0a189__tar.gz

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Files changed (158) hide show
  1. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/PKG-INFO +4 -7
  2. hpcflow_new2-0.2.0a189/hpcflow/_version.py +1 -0
  3. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/app.py +5 -31
  4. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/core/test_utils.py +2 -10
  5. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/core/validation.py +1 -5
  6. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/pyproject.toml +5 -11
  7. hpcflow_new2-0.2.0a187/hpcflow/_version.py +0 -1
  8. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/LICENSE +0 -0
  9. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/README.md +0 -0
  10. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/__init__.py +0 -0
  11. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/__pyinstaller/__init__.py +0 -0
  12. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/__pyinstaller/hook-hpcflow.py +0 -0
  13. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/app.py +0 -0
  14. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/cli.py +0 -0
  15. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/demo_data_manifest/__init__.py +0 -0
  16. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/demo_data_manifest/demo_data_manifest.json +0 -0
  17. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/scripts/__init__.py +0 -0
  18. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/scripts/demo_task_1_generate_t1_infile_1.py +0 -0
  19. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/scripts/demo_task_1_generate_t1_infile_2.py +0 -0
  20. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/scripts/demo_task_1_parse_p3.py +0 -0
  21. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/scripts/generate_t1_file_01.py +0 -0
  22. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/scripts/main_script_test_direct_in_direct_out.py +0 -0
  23. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/scripts/main_script_test_direct_in_direct_out_all_iters_test.py +0 -0
  24. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/scripts/main_script_test_direct_in_direct_out_env_spec.py +0 -0
  25. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/scripts/main_script_test_direct_in_direct_out_labels.py +0 -0
  26. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/scripts/main_script_test_direct_sub_param_in_direct_out.py +0 -0
  27. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/scripts/main_script_test_hdf5_in_obj.py +0 -0
  28. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/scripts/main_script_test_hdf5_out_obj.py +0 -0
  29. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/scripts/main_script_test_json_and_direct_in_json_out.py +0 -0
  30. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/scripts/main_script_test_json_in_json_and_direct_out.py +0 -0
  31. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/scripts/main_script_test_json_in_json_out.py +0 -0
  32. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/scripts/main_script_test_json_in_json_out_labels.py +0 -0
  33. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/scripts/main_script_test_json_in_obj.py +0 -0
  34. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/scripts/main_script_test_json_out_obj.py +0 -0
  35. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/scripts/main_script_test_json_sub_param_in_json_out_labels.py +0 -0
  36. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/scripts/parse_t1_file_01.py +0 -0
  37. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/template_components/__init__.py +0 -0
  38. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/template_components/command_files.yaml +0 -0
  39. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/template_components/environments.yaml +0 -0
  40. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/template_components/parameters.yaml +0 -0
  41. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/template_components/task_schemas.yaml +0 -0
  42. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/workflows/__init__.py +0 -0
  43. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/data/workflows/workflow_1.yaml +0 -0
  44. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/examples.ipynb +0 -0
  45. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/__init__.py +0 -0
  46. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/cli.py +0 -0
  47. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/cli_common.py +0 -0
  48. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/config/__init__.py +0 -0
  49. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/config/callbacks.py +0 -0
  50. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/config/cli.py +0 -0
  51. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/config/config.py +0 -0
  52. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/config/config_file.py +0 -0
  53. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/config/errors.py +0 -0
  54. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/core/__init__.py +0 -0
  55. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/core/actions.py +0 -0
  56. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/core/cache.py +0 -0
  57. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/core/command_files.py +0 -0
  58. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/core/commands.py +0 -0
  59. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/core/element.py +0 -0
  60. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/core/environment.py +0 -0
  61. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/core/errors.py +0 -0
  62. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/core/json_like.py +0 -0
  63. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/core/loop.py +0 -0
  64. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/core/loop_cache.py +0 -0
  65. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/core/object_list.py +0 -0
  66. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/core/parallel.py +0 -0
  67. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/core/parameters.py +0 -0
  68. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/core/rule.py +0 -0
  69. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/core/run_dir_files.py +0 -0
  70. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/core/task.py +0 -0
  71. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/core/task_schema.py +0 -0
  72. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/core/utils.py +0 -0
  73. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/core/workflow.py +0 -0
  74. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/core/zarr_io.py +0 -0
  75. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/data/__init__.py +0 -0
  76. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/data/config_file_schema.yaml +0 -0
  77. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/data/config_schema.yaml +0 -0
  78. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/data/environments_spec_schema.yaml +0 -0
  79. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/data/files_spec_schema.yaml +0 -0
  80. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/data/parameters_spec_schema.yaml +0 -0
  81. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/data/task_schema_spec_schema.yaml +0 -0
  82. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/data/workflow_spec_schema.yaml +0 -0
  83. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/demo/__init__.py +0 -0
  84. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/demo/cli.py +0 -0
  85. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/helper/__init__.py +0 -0
  86. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/helper/cli.py +0 -0
  87. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/helper/helper.py +0 -0
  88. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/helper/watcher.py +0 -0
  89. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/log.py +0 -0
  90. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/persistence/__init__.py +0 -0
  91. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/persistence/base.py +0 -0
  92. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/persistence/json.py +0 -0
  93. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/persistence/pending.py +0 -0
  94. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/persistence/store_resource.py +0 -0
  95. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/persistence/utils.py +0 -0
  96. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/persistence/zarr.py +0 -0
  97. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/runtime.py +0 -0
  98. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/submission/__init__.py +0 -0
  99. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/submission/jobscript.py +0 -0
  100. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/submission/jobscript_info.py +0 -0
  101. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/submission/schedulers/__init__.py +0 -0
  102. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/submission/schedulers/direct.py +0 -0
  103. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/submission/schedulers/sge.py +0 -0
  104. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/submission/schedulers/slurm.py +0 -0
  105. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/submission/schedulers/utils.py +0 -0
  106. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/submission/shells/__init__.py +0 -0
  107. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/submission/shells/base.py +0 -0
  108. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/submission/shells/bash.py +0 -0
  109. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/submission/shells/os_version.py +0 -0
  110. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/submission/shells/powershell.py +0 -0
  111. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/submission/submission.py +0 -0
  112. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/sdk/typing.py +0 -0
  113. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/conftest.py +0 -0
  114. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/data/__init__.py +0 -0
  115. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/data/benchmark_N_elements.yaml +0 -0
  116. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/data/workflow_1.json +0 -0
  117. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/data/workflow_1.yaml +0 -0
  118. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/data/workflow_1_slurm.yaml +0 -0
  119. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/data/workflow_1_wsl.yaml +0 -0
  120. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/data/workflow_test_run_abort.yaml +0 -0
  121. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/schedulers/direct_linux/test_direct_linux_submission.py +0 -0
  122. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/schedulers/slurm/test_slurm_submission.py +0 -0
  123. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/scripts/test_main_scripts.py +0 -0
  124. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/shells/wsl/test_wsl_submission.py +0 -0
  125. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_action.py +0 -0
  126. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_action_rule.py +0 -0
  127. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_app.py +0 -0
  128. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_cli.py +0 -0
  129. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_command.py +0 -0
  130. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_config.py +0 -0
  131. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_config_file.py +0 -0
  132. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_element.py +0 -0
  133. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_element_iteration.py +0 -0
  134. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_element_set.py +0 -0
  135. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_group.py +0 -0
  136. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_input_source.py +0 -0
  137. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_input_value.py +0 -0
  138. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_json_like.py +0 -0
  139. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_loop.py +0 -0
  140. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_object_list.py +0 -0
  141. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_parameter.py +0 -0
  142. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_persistence.py +0 -0
  143. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_resources.py +0 -0
  144. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_run.py +0 -0
  145. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_runtime.py +0 -0
  146. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_schema_input.py +0 -0
  147. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_shell.py +0 -0
  148. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_slurm.py +0 -0
  149. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_submission.py +0 -0
  150. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_task.py +0 -0
  151. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_task_schema.py +0 -0
  152. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_utils.py +0 -0
  153. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_value_sequence.py +0 -0
  154. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_workflow.py +0 -0
  155. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/unit/test_workflow_template.py +0 -0
  156. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/workflows/test_jobscript.py +0 -0
  157. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/tests/workflows/test_workflows.py +0 -0
  158. {hpcflow_new2-0.2.0a187 → hpcflow_new2-0.2.0a189}/hpcflow/viz_demo.ipynb +0 -0
@@ -1,14 +1,13 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: hpcflow-new2
3
- Version: 0.2.0a187
3
+ Version: 0.2.0a189
4
4
  Summary: Computational workflow management
5
5
  License: MIT
6
6
  Author: aplowman
7
7
  Author-email: adam.plowman@manchester.ac.uk
8
- Requires-Python: >=3.8,<3.13
8
+ Requires-Python: >=3.9,<3.13
9
9
  Classifier: License :: OSI Approved :: MIT License
10
10
  Classifier: Programming Language :: Python :: 3
11
- Classifier: Programming Language :: Python :: 3.8
12
11
  Classifier: Programming Language :: Python :: 3.9
13
12
  Classifier: Programming Language :: Python :: 3.10
14
13
  Classifier: Programming Language :: Python :: 3.11
@@ -19,8 +18,7 @@ Requires-Dist: colorama (>=0.4.6,<0.5.0)
19
18
  Requires-Dist: fsspec (>=2022.2.0,<2023.0.0)
20
19
  Requires-Dist: h5py (>=3.9.0,<4.0.0)
21
20
  Requires-Dist: msgpack (>=1.0.4,<2.0.0)
22
- Requires-Dist: numpy (>=1.24.4,<2.0.0) ; python_version < "3.9"
23
- Requires-Dist: numpy (>=1.26.4,<2.0.0) ; python_version >= "3.9"
21
+ Requires-Dist: numpy (>=1.26.4,<2.0.0)
24
22
  Requires-Dist: paramiko (>=3.2.0,<4.0.0)
25
23
  Requires-Dist: platformdirs (>=4.2.1,<5.0.0)
26
24
  Requires-Dist: psutil (>=5.9.4,<6.0.0)
@@ -32,8 +30,7 @@ Requires-Dist: ruamel-yaml (>=0.18.6,<0.19.0)
32
30
  Requires-Dist: termcolor (>=1.1.0,<2.0.0)
33
31
  Requires-Dist: valida (>=0.7.5,<0.8.0)
34
32
  Requires-Dist: watchdog (>=2.1.9,<3.0.0)
35
- Requires-Dist: zarr (==2.17.2) ; python_version >= "3.9"
36
- Requires-Dist: zarr (>=2.16.1,<3.0.0) ; python_version < "3.9"
33
+ Requires-Dist: zarr (>=2.17.2,<3.0.0)
37
34
  Description-Content-Type: text/markdown
38
35
 
39
36
  <div align="center">
@@ -0,0 +1 @@
1
+ __version__ = "0.2.0a189"
@@ -481,11 +481,7 @@ class BaseApp(metaclass=Singleton):
481
481
  components = {}
482
482
  for comp_type in TEMPLATE_COMP_TYPES:
483
483
  resource = f"{comp_type}.yaml"
484
- try:
485
- fh = resources.files(package).joinpath(resource).open("rt")
486
- except AttributeError:
487
- # < python 3.9; `resource.open_text` deprecated since 3.11
488
- fh = resources.open_text(package, resource)
484
+ fh = resources.files(package).joinpath(resource).open("rt")
489
485
  SDK_logger.info(f"Parsing file as YAML: {fh.name!r}")
490
486
  comp_dat = fh.read()
491
487
  components[comp_type] = read_YAML_str(comp_dat)
@@ -905,11 +901,7 @@ class BaseApp(metaclass=Singleton):
905
901
  # TODO: load custom directories / custom functions (via decorator)
906
902
  scripts_package = f"{self.package_name}.{self.scripts_dir}"
907
903
 
908
- try:
909
- ctx = resources.as_file(resources.files(scripts_package))
910
- except AttributeError:
911
- # < python 3.9; `resource.path` deprecated since 3.11
912
- ctx = resources.path(scripts_package, "")
904
+ ctx = resources.as_file(resources.files(scripts_package))
913
905
 
914
906
  scripts = {}
915
907
  with ctx as path:
@@ -930,11 +922,7 @@ class BaseApp(metaclass=Singleton):
930
922
  """Get all builtin demo workflow template file paths."""
931
923
  templates = {}
932
924
  pkg = f"{self.package_name}.{self.workflows_dir}"
933
- try:
934
- files = resources.files(pkg).iterdir()
935
- except AttributeError:
936
- # python 3.8; `resources.contents` deprecated since 3.11
937
- files = resources.contents(pkg)
925
+ files = resources.files(pkg).iterdir()
938
926
  for i in files:
939
927
  if i.suffix in (".yaml", ".yml", ".json", ".jsonc"):
940
928
  templates[i.stem] = i
@@ -1778,11 +1766,7 @@ class BaseApp(metaclass=Singleton):
1778
1766
  test_args = (self.pytest_args or []) + list(args)
1779
1767
  pkg = self.package_name
1780
1768
  tests_dir = "tests"
1781
- try:
1782
- ctx_man = resources.as_file(resources.files(pkg).joinpath(tests_dir))
1783
- except AttributeError:
1784
- # < Python 3.9
1785
- ctx_man = resources.path(pkg, tests_dir)
1769
+ ctx_man = resources.as_file(resources.files(pkg).joinpath(tests_dir))
1786
1770
  with ctx_man as test_dir:
1787
1771
  return pytest.main([str(test_dir)] + test_args)
1788
1772
 
@@ -2473,11 +2457,7 @@ class BaseApp(metaclass=Singleton):
2473
2457
  )
2474
2458
  package = self.demo_data_manifest_dir
2475
2459
  resource = "demo_data_manifest.json"
2476
- try:
2477
- fh = resources.files(package).joinpath(resource).open("rt")
2478
- except AttributeError:
2479
- # < python 3.9; `resource.open_text` deprecated since 3.11
2480
- fh = resources.open_text(package, resource)
2460
+ fh = resources.files(package).joinpath(resource).open("rt")
2481
2461
  manifest = json.load(fh)
2482
2462
  fh.close()
2483
2463
  return manifest
@@ -2561,12 +2541,6 @@ class BaseApp(metaclass=Singleton):
2561
2541
  try:
2562
2542
  ctx_man = resources.as_file(resources.files(package).joinpath(src_fn))
2563
2543
  # raises ModuleNotFoundError
2564
- except AttributeError:
2565
- # < python 3.9
2566
- try:
2567
- ctx_man = resources.path(package, src_fn)
2568
- except ModuleNotFoundError:
2569
- resource_exists = False
2570
2544
  except ModuleNotFoundError:
2571
2545
  resource_exists = False
2572
2546
 
@@ -198,11 +198,7 @@ def make_test_data_YAML_workflow(
198
198
  ):
199
199
  """Generate a workflow whose template file is defined in the test data directory."""
200
200
  app = hf if app is None else app
201
- try:
202
- script_ctx = resources.as_file(resources.files(pkg).joinpath(workflow_name))
203
- except AttributeError:
204
- # < python 3.9; `resource.path` deprecated since 3.11
205
- script_ctx = resources.path(pkg, workflow_name)
201
+ script_ctx = resources.as_file(resources.files(pkg).joinpath(workflow_name))
206
202
 
207
203
  with script_ctx as file_path:
208
204
  return app.Workflow.from_YAML_file(YAML_path=file_path, path=path, **kwargs)
@@ -213,11 +209,7 @@ def make_test_data_YAML_workflow_template(
213
209
  ):
214
210
  """Generate a workflow template whose file is defined in the test data directory."""
215
211
  app = hf if app is None else app
216
- try:
217
- script_ctx = resources.as_file(resources.files(pkg).joinpath(workflow_name))
218
- except AttributeError:
219
- # < python 3.9; `resource.path` deprecated since 3.11
220
- script_ctx = resources.path(pkg, workflow_name)
212
+ script_ctx = resources.as_file(resources.files(pkg).joinpath(workflow_name))
221
213
 
222
214
  with script_ctx as file_path:
223
215
  return app.WorkflowTemplate.from_file(path=file_path, **kwargs)
@@ -18,11 +18,7 @@ def get_schema(filename):
18
18
  (:py:mod:`hpcflow.sdk.data`).
19
19
  """
20
20
  package = "hpcflow.sdk.data"
21
- try:
22
- fh = resources.files(package).joinpath(filename).open("rt")
23
- except AttributeError:
24
- # < python 3.9; `resource.open_text` deprecated since 3.11
25
- fh = resources.open_text(package, filename)
21
+ fh = resources.files(package).joinpath(filename).open("rt")
26
22
  schema_dat = fh.read()
27
23
  fh.close()
28
24
  schema = Schema.from_yaml(schema_dat)
@@ -1,7 +1,7 @@
1
1
 
2
2
  [tool.poetry]
3
3
  name = "hpcflow-new2"
4
- version = "0.2.0a187"
4
+ version = "0.2.0a189"
5
5
 
6
6
  description = "Computational workflow management"
7
7
  authors = ["aplowman <adam.plowman@manchester.ac.uk>"]
@@ -13,15 +13,9 @@ packages = [
13
13
  exclude = ["hpcflow/data/demo_data"]
14
14
 
15
15
  [tool.poetry.dependencies]
16
- python = ">=3.8,<3.13"
17
- zarr = [
18
- {version = "^2.16.1", python = "<3.9"},
19
- {version = "2.17.2", python = ">=3.9"}
20
- ]
21
- numpy = [
22
- {version = "^1.24.4", python = "<3.9"},
23
- {version = "^1.26.4", python = ">=3.9"},
24
- ]
16
+ python = ">=3.9,<3.13"
17
+ zarr = "^2.17.2"
18
+ numpy = "^1.26.4"
25
19
  ruamel-yaml = "^0.18.6"
26
20
  colorama = "^0.4.6"
27
21
  termcolor = "^1.1.0"
@@ -76,7 +70,7 @@ hook-dirs = "hpcflow.__pyinstaller:get_hook_dirs"
76
70
 
77
71
  [tool.commitizen]
78
72
  name = "cz_conventional_commits"
79
- version = "0.2.0a187"
73
+ version = "0.2.0a189"
80
74
  tag_format = "v$version"
81
75
  version_files = [
82
76
  "pyproject.toml:version",
@@ -1 +0,0 @@
1
- __version__ = "0.2.0a187"