hiveplotlib 0.28.0__tar.gz → 0.28.1__tar.gz

{hiveplotlib-0.28.0/src/hiveplotlib.egg-info → hiveplotlib-0.28.1}/PKG-INFO

@@ -1,37 +1,9 @@
 Metadata-Version: 2.4
 Name: hiveplotlib
-Version: 0.28.0
+Version: 0.28.1
 Summary: Visualize Network Data with Hive Plots
 Author-email: Gary Koplik <gary.koplik@gmail.com>
-License: Copyright (c) 2020 - 2026, Gary Koplik
-        All rights reserved.
-        
-        Redistribution and use in source and binary forms, with or without modification,
-        are permitted provided that the following conditions are met:
-        
-        Redistributions of source code must retain the above copyright notice,
-        this list of conditions and the following disclaimer.
-        
-        Redistributions in binary form must reproduce the above copyright notice,
-        this list of conditions and the following disclaimer in the documentation
-        and/or other materials provided with the distribution.
-        
-        Neither the name of Gary Koplik nor the names of any contributors
-        may be used to endorse or promote products derived from this software
-        without specific prior written permission.
-        
-        THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
-        AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-        IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
-        ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
-        LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
-        CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
-        SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
-        INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
-        CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
-        ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
-        THE POSSIBILITY OF SUCH DAMAGE.
-        
+License-Expression: BSD-3-Clause
 Project-URL: Documentation, https://hiveplotlib.readthedocs.io/stable/
 Project-URL: Source, https://gitlab.com/hiveplotlib/hiveplotlib
 Requires-Python: >=3.10
@@ -56,7 +28,6 @@ Requires-Dist: hiveplotlib[datashader]; extra == "dev"
 Requires-Dist: hiveplotlib[holoviews]; extra == "dev"
 Requires-Dist: hiveplotlib[networkx]; extra == "dev"
 Requires-Dist: hiveplotlib[plotly]; extra == "dev"
-Requires-Dist: holoviews>=1.15; extra == "dev"
 Requires-Dist: jupyter; extra == "dev"
 Requires-Dist: nx-parallel; extra == "dev"
 Requires-Dist: pybadges; extra == "dev"
@@ -83,7 +54,7 @@ Requires-Dist: memory_profiler; extra == "perf"
 Provides-Extra: plotly
 Requires-Dist: plotly; extra == "plotly"
 Provides-Extra: ruff
-Requires-Dist: ruff; extra == "ruff"
+Requires-Dist: ruff==0.15.22; extra == "ruff"
 Provides-Extra: testing
 Requires-Dist: pytest; extra == "testing"
 Requires-Dist: pytest-cov; extra == "testing"

{hiveplotlib-0.28.0 → hiveplotlib-0.28.1}/pyproject.toml

@@ -7,13 +7,14 @@ build-backend = "setuptools.build_meta"
 [project]
 name = "hiveplotlib"
 requires-python = ">=3.10"
-version = "0.28.0"
+version = "0.28.1"
 authors = [
     {name="Gary Koplik", email="gary.koplik@gmail.com"}
 ]
 description = "Visualize Network Data with Hive Plots"
 readme = "README.md"
-license = {file = "LICENSE"}
+license = "BSD-3-Clause"
+license-files = ["LICENSE"]
 urls = {Documentation="https://hiveplotlib.readthedocs.io/stable/", Source="https://gitlab.com/hiveplotlib/hiveplotlib" }
 
 
@@ -46,7 +47,6 @@ dev = [
     "hiveplotlib[holoviews]",
     "hiveplotlib[networkx]",
     "hiveplotlib[plotly]",
-    "holoviews>=1.15",
     "jupyter",
     "nx-parallel",  # CI-testable networkx dispatch backend for `graph_metric_backend` tests
     "pybadges",
@@ -88,7 +88,7 @@ plotly = [
 
 # ruff code hygeine checks
 ruff = [
-    "ruff",
+    "ruff==0.15.22",  # pinned for the life of 0.28.x, ruff 0.16 expanded its default rules and formats markdown
 ]
 
 testing = [
@@ -105,6 +105,11 @@ ty = [
     "ty==0.0.20",  # pinning for now, 0.0.21 would require non trivial type hint changes that affect the user
 ]
 
+[tool.uv]
+# scope `uv lock` and `uv audit` to python 3.11+. Python 3.10's resolution is stuck on versions with unfixable advisories
+#  (e.g. pillow 13 requires 3.11+), which would keep `uv_audit` red. Python 3.10 installs and CI tests are unaffected.
+environments = ["python_version >= '3.11'"]
+
 [tool.setuptools.packages.find]
 where = ["src"]
 include = ["hiveplotlib*"]

{hiveplotlib-0.28.0 → hiveplotlib-0.28.1}/src/hiveplotlib/utils.py

@@ -14,7 +14,7 @@ try:  # optional dependency
     _NUMBA_AVAILABLE = True
 except Exception:  # pragma: no cover - numba is optional
     _NUMBA_AVAILABLE = False
-    prange = range  # type: ignore
+    prange = range
 
 
 def cartesian2polar(
@@ -222,7 +222,7 @@ if _NUMBA_AVAILABLE:  # pragma: no cover - @njit bodies are invisible to Python
         total = n * (num_steps + 1)
         # allocate output based on input dtype (supports float32/float64)
         out = np.empty((total, 2), dtype=start_x.dtype)
-        for i in prange(n):  # type: ignore[misc]
+        for i in prange(n):
             base = i * (num_steps + 1)
             for k in range(num_steps):
                 t = k / (num_steps - 1) if num_steps > 1 else 0.0

{hiveplotlib-0.28.0 → hiveplotlib-0.28.1}/src/hiveplotlib/viz/bokeh.py

@@ -12,7 +12,7 @@ except ImportError as ie:  # pragma: no cover
     raise ImportError(msg) from ie
 
 import warnings
-from typing import Any, Hashable, List, Literal, Optional, Union
+from typing import Any, Hashable, List, Literal, Optional, Union, cast
 
 import numpy as np
 import pandas as pd
@@ -92,6 +92,25 @@ def _bokeh_fig_setup(
     return fig
 
 
+def _bokeh_source_columns(df: pd.DataFrame) -> dict[Any, np.ndarray]:
+    """
+    Convert a dataframe to numpy columns for a ``bokeh`` ``ColumnDataSource``.
+
+    Passing the dataframe itself would hit the deprecated ``reset_index(inplace=True)`` call inside ``bokeh``.
+
+    :param df: dataframe to convert.
+    :return: dictionary of column names to numpy arrays, copied because ``bokeh`` requires writable arrays.
+        Timezone-aware datetimes become naive UTC, because ``bokeh`` warns on every value of the object arrays they
+        otherwise produce.
+    """
+    columns = {}
+    for name, column in df.items():
+        if pd.api.types.is_datetime64_any_dtype(column) and column.dt.tz is not None:
+            column = column.dt.tz_convert(None)
+        columns[name] = column.to_numpy(copy=True)
+    return columns
+
+
 def axes_viz(
     instance: Union[BaseHivePlot, HivePlot, P2CP],
     fig: Optional[figure] = None,
@@ -190,7 +209,7 @@ def axes_viz(
         df["y"] = to_plot[:, 1]
         # make sure names are always hover compatible
         df, original_to_sanitized_map = __sanitize_dataframe_columns(df)
-        data = ColumnDataSource(data=df)
+        data = ColumnDataSource(data=_bokeh_source_columns(df))
         line = fig.line(
             x=original_to_sanitized_map["x"],
             y=original_to_sanitized_map["y"],
@@ -394,7 +413,7 @@ def node_viz(
     scatter_outputs = []
     for axis in hive_plot.axes.values():
         df_to_plot = axis.node_placements.drop(columns=["rho"])
-        to_plot = ColumnDataSource(df_to_plot)
+        to_plot = ColumnDataSource(data=_bokeh_source_columns(df_to_plot))
         if df_to_plot.shape[0] > 0:
             scatter = fig.scatter("x", "y", source=to_plot, **final_scatter_kwargs)
             scatter_outputs.append(scatter)
@@ -625,7 +644,7 @@ def edge_viz(
     # kill all legend labeling for initial rendering (if there is anything that plotted with labels)
     if fig.legend != []:
         for i in fig.legend.items:
-            i.visible = False  # ty:ignore[invalid-assignment]
+            i.visible = False
 
     return fig
 
@@ -938,7 +957,7 @@ def p2cp_legend(
     """
     # kill all legend labeling before rebuilding legend
     for i in fig.legend.items:
-        i.visible = False  # ty:ignore[invalid-assignment]
+        i.visible = False
 
     # need to convert tags to strings, as we needed to coax to strings to make them legend values with bokeh
     tags = (
@@ -948,8 +967,10 @@ def p2cp_legend(
     )
 
     for i in fig.legend.items:
-        if str(i.label["value"]) in tags:  # ty:ignore[unresolved-attribute]
-            i.visible = True  # ty:ignore[invalid-assignment]
+        # legend items built from `legend_label` always hold a `{"value": <label>}` dict
+        label = cast("dict", i.label)
+        if str(label["value"]) in tags:
+            i.visible = True
 
     fig.legend.title = title
 

{hiveplotlib-0.28.0 → hiveplotlib-0.28.1}/src/hiveplotlib/viz/holoviews.py

@@ -253,7 +253,9 @@ def axes_viz(
             segments_kwargs["tools"] = [hover_tool]
 
     # fill NaN values with "N/A" string for hover tooltips
-    axis_info = axis_info.fillna("N/A")
+    #  (cast to object first, pandas deprecated silently upcasting numeric columns to fit a string fill value)
+    na_columns = axis_info.columns[axis_info.isna().any()]
+    axis_info = axis_info.astype(dict.fromkeys(na_columns, object)).fillna("N/A")
     axis_fig = hv.Segments(
         axis_info,
         kdims=[original_to_sanitized_map[i] for i in ["x_0", "y_0", "x_1", "y_1"]],

{hiveplotlib-0.28.0 → hiveplotlib-0.28.1/src/hiveplotlib.egg-info}/PKG-INFO

@@ -1,37 +1,9 @@
 Metadata-Version: 2.4
 Name: hiveplotlib
-Version: 0.28.0
+Version: 0.28.1
 Summary: Visualize Network Data with Hive Plots
 Author-email: Gary Koplik <gary.koplik@gmail.com>
-License: Copyright (c) 2020 - 2026, Gary Koplik
-        All rights reserved.
-        
-        Redistribution and use in source and binary forms, with or without modification,
-        are permitted provided that the following conditions are met:
-        
-        Redistributions of source code must retain the above copyright notice,
-        this list of conditions and the following disclaimer.
-        
-        Redistributions in binary form must reproduce the above copyright notice,
-        this list of conditions and the following disclaimer in the documentation
-        and/or other materials provided with the distribution.
-        
-        Neither the name of Gary Koplik nor the names of any contributors
-        may be used to endorse or promote products derived from this software
-        without specific prior written permission.
-        
-        THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
-        AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-        IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
-        ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
-        LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
-        CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
-        SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
-        INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
-        CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
-        ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
-        THE POSSIBILITY OF SUCH DAMAGE.
-        
+License-Expression: BSD-3-Clause
 Project-URL: Documentation, https://hiveplotlib.readthedocs.io/stable/
 Project-URL: Source, https://gitlab.com/hiveplotlib/hiveplotlib
 Requires-Python: >=3.10
@@ -56,7 +28,6 @@ Requires-Dist: hiveplotlib[datashader]; extra == "dev"
 Requires-Dist: hiveplotlib[holoviews]; extra == "dev"
 Requires-Dist: hiveplotlib[networkx]; extra == "dev"
 Requires-Dist: hiveplotlib[plotly]; extra == "dev"
-Requires-Dist: holoviews>=1.15; extra == "dev"
 Requires-Dist: jupyter; extra == "dev"
 Requires-Dist: nx-parallel; extra == "dev"
 Requires-Dist: pybadges; extra == "dev"
@@ -83,7 +54,7 @@ Requires-Dist: memory_profiler; extra == "perf"
 Provides-Extra: plotly
 Requires-Dist: plotly; extra == "plotly"
 Provides-Extra: ruff
-Requires-Dist: ruff; extra == "ruff"
+Requires-Dist: ruff==0.15.22; extra == "ruff"
 Provides-Extra: testing
 Requires-Dist: pytest; extra == "testing"
 Requires-Dist: pytest-cov; extra == "testing"

{hiveplotlib-0.28.0 → hiveplotlib-0.28.1}/src/hiveplotlib.egg-info/SOURCES.txt

@@ -2,7 +2,6 @@ LICENSE
 MANIFEST.in
 README.md
 pyproject.toml
-setup.py
 src/hiveplotlib/__init__.py
 src/hiveplotlib/axis.py
 src/hiveplotlib/converters.py

{hiveplotlib-0.28.0 → hiveplotlib-0.28.1}/src/hiveplotlib.egg-info/requires.txt

@@ -20,7 +20,6 @@ hiveplotlib[datashader]
 hiveplotlib[holoviews]
 hiveplotlib[networkx]
 hiveplotlib[plotly]
-holoviews>=1.15
 jupyter
 nx-parallel
 pybadges
@@ -53,7 +52,7 @@ memory_profiler
 plotly
 
 [ruff]
-ruff
+ruff==0.15.22
 
 [testing]
 pytest

hiveplotlib-0.28.0/setup.py

@@ -1,8 +0,0 @@
-"""
-Setup.
-"""
-
-import setuptools
-
-if __name__ == "__main__":
-    setuptools.setup()