histoseg 0.1.8.1__tar.gz → 0.1.9.1__tar.gz

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Files changed (50) hide show
  1. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/PKG-INFO +9 -7
  2. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/README.md +0 -6
  3. histoseg-0.1.9.1/docs/tutorials/pattern1_isoline.ipynb +657 -0
  4. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/pyproject.toml +8 -1
  5. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/src/histoseg/_version.py +3 -3
  6. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/src/histoseg/contours/pattern1_isoline.py +286 -26
  7. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/src/histoseg.egg-info/PKG-INFO +9 -7
  8. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/src/histoseg.egg-info/SOURCES.txt +1 -1
  9. histoseg-0.1.9.1/src/histoseg.egg-info/requires.txt +8 -0
  10. histoseg-0.1.8.1/docs/tutorials/pattern1_isoline.ipynb +0 -859
  11. histoseg-0.1.8.1/examples/contour_generation_pattern1_from_hf.ipynb +0 -99
  12. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/.editorconfig +0 -0
  13. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/.github/ISSUE_TEMPLATE.md +0 -0
  14. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/.github/workflows/publish.yml +0 -0
  15. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/.gitignore +0 -0
  16. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/.readthedocs.yaml +0 -0
  17. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/.travis.yml +0 -0
  18. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/CODE_OF_CONDUCT.rst +0 -0
  19. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/COMMERCIAL.md +0 -0
  20. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/LICENSE +0 -0
  21. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/disable_xsdata_entrypoints.py +0 -0
  22. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/docs/Makefile +0 -0
  23. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/docs/authors.rst +0 -0
  24. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/docs/conf.py +0 -0
  25. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/docs/contour.md +0 -0
  26. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/docs/contributing.rst +0 -0
  27. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/docs/history.rst +0 -0
  28. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/docs/index.rst +0 -0
  29. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/docs/installation.rst +0 -0
  30. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/docs/make.bat +0 -0
  31. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/docs/readme.rst +0 -0
  32. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/docs/requirements.txt +0 -0
  33. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/docs/usage.rst +0 -0
  34. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/docs/workflows/contour_generation.md +0 -0
  35. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/docs/workflows/index.md +0 -0
  36. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/requirements.txt +0 -0
  37. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/setup.cfg +0 -0
  38. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/setup.py +0 -0
  39. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/src/histoseg/__init__.py +0 -0
  40. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/src/histoseg/contours/__init__.py +0 -0
  41. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/src/histoseg/geometry/__init__.py +0 -0
  42. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/src/histoseg/geometry/tissue_boundary.py +0 -0
  43. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/src/histoseg/gui/__init__.py +0 -0
  44. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/src/histoseg/gui/gui_app.py +0 -0
  45. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/src/histoseg/io/__init__.py +0 -0
  46. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/src/histoseg/io/huggingface.py +0 -0
  47. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/src/histoseg/sfplot/Searcher_Findee_Score.py +0 -0
  48. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/src/histoseg.egg-info/dependency_links.txt +0 -0
  49. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/src/histoseg.egg-info/top_level.txt +0 -0
  50. {histoseg-0.1.8.1 → histoseg-0.1.9.1}/workflows/contour_generation_pattern1.ipynb +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: histoseg
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- Version: 0.1.8.1
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+ Version: 0.1.9.1
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  Summary: ...
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  Author-email: Taobo Hu <taobo.hu@scilifelab.se>
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  License: Required Notice: Copyright (c) 2025 SPATHO AB.
@@ -86,6 +86,14 @@ Project-URL: Documentation, https://histoseg.readthedocs.io
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  Requires-Python: >=3.10
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  Description-Content-Type: text/markdown
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  License-File: LICENSE
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+ Requires-Dist: numpy
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+ Requires-Dist: pandas
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+ Requires-Dist: pyarrow
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+ Requires-Dist: scipy
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+ Requires-Dist: scikit-learn
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+ Requires-Dist: seaborn
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+ Requires-Dist: shapely
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+ Requires-Dist: matplotlib
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  Dynamic: license-file
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  <div align="center">
@@ -155,12 +163,6 @@ The Pattern1 isoline workflow uses:
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  - matplotlib
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  - a Parquet engine (**pyarrow is recommended**)
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- If you run into missing imports, install them explicitly:
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-
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- ```bash
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- pip install -U numpy pandas pyarrow scipy scikit-learn matplotlib
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- ```
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-
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  Optional:
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  - Hugging Face downloader: `pip install -U huggingface_hub`
@@ -65,12 +65,6 @@ The Pattern1 isoline workflow uses:
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  - matplotlib
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  - a Parquet engine (**pyarrow is recommended**)
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- If you run into missing imports, install them explicitly:
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-
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- ```bash
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- pip install -U numpy pandas pyarrow scipy scikit-learn matplotlib
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- ```
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-
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  Optional:
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  - Hugging Face downloader: `pip install -U huggingface_hub`