histomicsui 1.8.1.dev8__tar.gz → 1.8.1.dev14__tar.gz

{histomicsui-1.8.1.dev8 → histomicsui-1.8.1.dev14}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: histomicsui
-Version: 1.8.1.dev8
+Version: 1.8.1.dev14
 Summary: Organize, visualize, and analyze histology images.
 Home-page: https://github.com/DigitalSlideArchive/histomicsui
 Author: Kitware, Inc.

{histomicsui-1.8.1.dev8 → histomicsui-1.8.1.dev14}/histomicsui/web_client/dialogs/editStyleGroups.js

@@ -28,8 +28,9 @@ const EditStyleGroups = View.extend({
         'click #h-import-replace': '_toggleImportReplace',
         'change #h-import-groups': '_importGroups',
         'change .h-style-def': '_updateStyle',
+        'change #h-element-fill-pattern': '_updateStyle',
         'changeColor .h-colorpicker': '_updateStyle',
-        'change select': '_setStyle'
+        'change .h-group-name': '_setStyle'
     },
 
     render() {

{histomicsui-1.8.1.dev8 → histomicsui-1.8.1.dev14}/histomicsui/web_client/panels/AnnotationSelector.js

@@ -35,6 +35,7 @@ var AnnotationSelector = Panel.extend({
         'input #h-annotation-opacity': '_changeGlobalOpacity',
         'input #h-annotation-fill-opacity': '_changeGlobalFillOpacity',
         'click .h-annotation-select-by-region': 'selectAnnotationByRegion',
+        'click .h-toggle-group-annotations': 'toggleGroupAnnotations',
         'click .h-annotation-group-name': '_toggleExpandGroup'
     }),
 
@@ -624,6 +625,27 @@ var AnnotationSelector = Panel.extend({
         this.trigger('h:annotationFillOpacity', this._fillOpacity);
     },
 
+    toggleGroupAnnotations(evt) {
+        // prevent the click from also expanding/collapsing the group
+        evt.stopPropagation();
+        let group = $(evt.currentTarget).closest('.h-annotation-group').data('groupName');
+        // The ungrouped annotations are displayed under the 'Other' group, but
+        // their group value is null
+        group = group === 'Other' ? null : group;
+        const annotations = this.collection.filter((model) => _.contains(model.get('groups'), group));
+        const allDisplayed = annotations.length && annotations.every((model) => model.get('displayed'));
+
+        this._showAllAnnotationsState = false;
+        annotations.forEach((model) => {
+            model.set('displayed', !allDisplayed);
+            if (allDisplayed) {
+                model.unset('highlight');
+                this._deselectAnnotationElements(model);
+                this._deactivateAnnotation(model);
+            }
+        });
+    },
+
     _toggleExpandGroup(evt) {
         const name = $(evt.currentTarget).parent().data('groupName');
         if (this._expandedGroups.has(name)) {

{histomicsui-1.8.1.dev8 → histomicsui-1.8.1.dev14}/histomicsui/web_client/stylesheets/panels/annotationSelector.styl

@@ -67,6 +67,11 @@
     white-space nowrap
     min-width 0
 
+  .h-toggle-group-annotations
+    flex-shrink 0
+    cursor pointer
+    color #6b6b6b
+
   .h-annotation-group-legend
     width 18px
     height 18px

{histomicsui-1.8.1.dev8 → histomicsui-1.8.1.dev14}/histomicsui/web_client/templates/panels/annotationSelector.pug

@@ -28,6 +28,7 @@ block content
       var annotations = annotationGroups[groupName];
       var expanded = expandedGroups.has(groupName);
       var expandedClass = expanded ? 'h-group-expanded' : 'h-group-collapsed';
+      var groupDisplayed = annotations.length && annotations.every((a) => a.get('displayed'));
       var samplestyle={};
       annotations.some((a) => {
         var elems = (a.get('annotation') || {}).elements;
@@ -57,6 +58,10 @@ block content
           i.icon-folder
         .h-annotation-group-text
           = groupName
+        if groupDisplayed
+          span.icon-eye.h-toggle-group-annotations(title='Hide all annotations in this group')
+        else
+          span.icon-eye-off.h-toggle-group-annotations(title='Show all annotations in this group')
         span.h-annotation-group-legend(style=samplestyle)
       if expanded
         each annotation in annotations

{histomicsui-1.8.1.dev8 → histomicsui-1.8.1.dev14}/histomicsui.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: histomicsui
-Version: 1.8.1.dev8
+Version: 1.8.1.dev14
 Summary: Organize, visualize, and analyze histology images.
 Home-page: https://github.com/DigitalSlideArchive/histomicsui
 Author: Kitware, Inc.

{histomicsui-1.8.1.dev8 → histomicsui-1.8.1.dev14}/histomicsui.egg-info/SOURCES.txt

@@ -32,6 +32,8 @@ histomicsui.egg-info/dependency_links.txt
 histomicsui.egg-info/entry_points.txt
 histomicsui.egg-info/not-zip-safe
 histomicsui.egg-info/requires.txt
+histomicsui.egg-info/scm_file_list.json
+histomicsui.egg-info/scm_version.json
 histomicsui.egg-info/top_level.txt
 histomicsui/models/__init__.py
 histomicsui/models/aperio.py

histomicsui-1.8.1.dev14/histomicsui.egg-info/scm_file_list.json

@@ -0,0 +1,185 @@
+{
+  "files": [
+    ".editorconfig",
+    ".git-blame-ignore-revs",
+    ".gitignore",
+    ".pre-commit-config.yaml",
+    "LICENSE",
+    "MANIFEST.in",
+    "NOTICE",
+    "README.rst",
+    "codecov.yml",
+    "pyproject.toml",
+    "requirements-dev.txt",
+    "ruff.toml",
+    "setup.cfg",
+    "setup.py",
+    "tox.ini",
+    ".circleci/config.yml",
+    "docs/config_options.rst",
+    "docs/controls.rst",
+    "docs/slicer_cli_plugins.rst",
+    "docs/images/cut.gif",
+    "docs/images/difference.gif",
+    "docs/images/intersect.gif",
+    "docs/images/union.gif",
+    "docs/images/xor.gif",
+    "histomicsui/__init__.py",
+    "histomicsui/constants.py",
+    "histomicsui/handlers.py",
+    "histomicsui/webroot.mako",
+    "histomicsui/models/__init__.py",
+    "histomicsui/models/aperio.py",
+    "histomicsui/models/case.py",
+    "histomicsui/models/cohort.py",
+    "histomicsui/models/image.py",
+    "histomicsui/models/meta.py",
+    "histomicsui/models/pathology.py",
+    "histomicsui/models/slide.py",
+    "histomicsui/rest/__init__.py",
+    "histomicsui/rest/aperio.py",
+    "histomicsui/rest/hui_resource.py",
+    "histomicsui/rest/image_browse_resource.py",
+    "histomicsui/rest/system.py",
+    "histomicsui/rest/tcga.py",
+    "histomicsui/web_client/app.js",
+    "histomicsui/web_client/events.js",
+    "histomicsui/web_client/index.js",
+    "histomicsui/web_client/main.js",
+    "histomicsui/web_client/package.json",
+    "histomicsui/web_client/router.js",
+    "histomicsui/web_client/routes.js",
+    "histomicsui/web_client/webpack.helper.js",
+    "histomicsui/web_client/collections/StyleCollection.js",
+    "histomicsui/web_client/collections/UserCollection.js",
+    "histomicsui/web_client/collections/index.js",
+    "histomicsui/web_client/dialogs/confirmDialog.js",
+    "histomicsui/web_client/dialogs/editElement.js",
+    "histomicsui/web_client/dialogs/editRegionOfInterest.js",
+    "histomicsui/web_client/dialogs/editStyleGroups.js",
+    "histomicsui/web_client/dialogs/index.js",
+    "histomicsui/web_client/dialogs/metadataPlot.js",
+    "histomicsui/web_client/dialogs/openAnnotatedImage.js",
+    "histomicsui/web_client/dialogs/openImage.js",
+    "histomicsui/web_client/dialogs/saveAnnotation.js",
+    "histomicsui/web_client/models/StyleModel.js",
+    "histomicsui/web_client/models/index.js",
+    "histomicsui/web_client/panels/AnnotationSelector.js",
+    "histomicsui/web_client/panels/DrawWidget.js",
+    "histomicsui/web_client/panels/FrameSelectorWidget.js",
+    "histomicsui/web_client/panels/MetadataPlot.js",
+    "histomicsui/web_client/panels/MetadataWidget.js",
+    "histomicsui/web_client/panels/OverviewWidget.js",
+    "histomicsui/web_client/panels/RegionSelector.js",
+    "histomicsui/web_client/panels/ZoomWidget.js",
+    "histomicsui/web_client/panels/index.js",
+    "histomicsui/web_client/static/favicon.png",
+    "histomicsui/web_client/stylesheets/body/configView.styl",
+    "histomicsui/web_client/stylesheets/body/image.styl",
+    "histomicsui/web_client/stylesheets/dialogs/editStyleGroups.styl",
+    "histomicsui/web_client/stylesheets/dialogs/metadataPlot.styl",
+    "histomicsui/web_client/stylesheets/dialogs/openAnnotatedImage.styl",
+    "histomicsui/web_client/stylesheets/dialogs/saveAnnotation.styl",
+    "histomicsui/web_client/stylesheets/layout/header.styl",
+    "histomicsui/web_client/stylesheets/layout/headerAnalyses.styl",
+    "histomicsui/web_client/stylesheets/layout/headerImage.styl",
+    "histomicsui/web_client/stylesheets/layout/layout.styl",
+    "histomicsui/web_client/stylesheets/panels/annotationSelector.styl",
+    "histomicsui/web_client/stylesheets/panels/drawWidget.styl",
+    "histomicsui/web_client/stylesheets/panels/frameSelectorWidget.styl",
+    "histomicsui/web_client/stylesheets/panels/metadataPlot.styl",
+    "histomicsui/web_client/stylesheets/panels/metadataWidget.styl",
+    "histomicsui/web_client/stylesheets/panels/overviewWidget.styl",
+    "histomicsui/web_client/stylesheets/panels/regionSelector.styl",
+    "histomicsui/web_client/stylesheets/panels/zoomWidget.styl",
+    "histomicsui/web_client/stylesheets/popover/annotationContextMenu.styl",
+    "histomicsui/web_client/stylesheets/popover/annotationPopover.styl",
+    "histomicsui/web_client/stylesheets/views/itemList.styl",
+    "histomicsui/web_client/stylesheets/views/searchResultsView.styl",
+    "histomicsui/web_client/templates/elementProps.pug",
+    "histomicsui/web_client/templates/body/configView.pug",
+    "histomicsui/web_client/templates/body/image.pug",
+    "histomicsui/web_client/templates/dialogs/annotatedImageList.pug",
+    "histomicsui/web_client/templates/dialogs/confirmDialog.pug",
+    "histomicsui/web_client/templates/dialogs/editElement.pug",
+    "histomicsui/web_client/templates/dialogs/editRegionOfInterest.pug",
+    "histomicsui/web_client/templates/dialogs/editStyleGroups.pug",
+    "histomicsui/web_client/templates/dialogs/metadataPlot.pug",
+    "histomicsui/web_client/templates/dialogs/openAnnotatedImage.pug",
+    "histomicsui/web_client/templates/dialogs/openImage.pug",
+    "histomicsui/web_client/templates/dialogs/saveAnnotation.pug",
+    "histomicsui/web_client/templates/layout/header.pug",
+    "histomicsui/web_client/templates/layout/headerAnalyses.pug",
+    "histomicsui/web_client/templates/layout/headerImage.pug",
+    "histomicsui/web_client/templates/layout/headerUser.pug",
+    "histomicsui/web_client/templates/layout/layout.pug",
+    "histomicsui/web_client/templates/panels/annotationSelector.pug",
+    "histomicsui/web_client/templates/panels/drawWidget.pug",
+    "histomicsui/web_client/templates/panels/drawWidgetElement.pug",
+    "histomicsui/web_client/templates/panels/frameSelectorWidget.pug",
+    "histomicsui/web_client/templates/panels/metadataPlot.pug",
+    "histomicsui/web_client/templates/panels/metadataWidgetPanel.pug",
+    "histomicsui/web_client/templates/panels/overviewWidget.pug",
+    "histomicsui/web_client/templates/panels/panel.pug",
+    "histomicsui/web_client/templates/panels/regionSelector.pug",
+    "histomicsui/web_client/templates/panels/zoomWidget.pug",
+    "histomicsui/web_client/templates/popover/annotationContextMenu.pug",
+    "histomicsui/web_client/templates/popover/annotationPopover.pug",
+    "histomicsui/web_client/templates/popover/annotationPopoverMetadata.pug",
+    "histomicsui/web_client/templates/popover/pixelmapContextMenu.pug",
+    "histomicsui/web_client/views/HierarchyWidget.js",
+    "histomicsui/web_client/views/JobDetailsWidget.js",
+    "histomicsui/web_client/views/View.js",
+    "histomicsui/web_client/views/index.js",
+    "histomicsui/web_client/views/itemList.js",
+    "histomicsui/web_client/views/itemPage.js",
+    "histomicsui/web_client/views/searchResultsView.js",
+    "histomicsui/web_client/views/utils.js",
+    "histomicsui/web_client/views/body/ConfigView.js",
+    "histomicsui/web_client/views/body/ImageView.js",
+    "histomicsui/web_client/views/body/index.js",
+    "histomicsui/web_client/views/layout/HeaderAnalysesView.js",
+    "histomicsui/web_client/views/layout/HeaderImageView.js",
+    "histomicsui/web_client/views/layout/HeaderUserView.js",
+    "histomicsui/web_client/views/layout/HeaderView.js",
+    "histomicsui/web_client/views/layout/LoginView.js",
+    "histomicsui/web_client/views/layout/index.js",
+    "histomicsui/web_client/views/popover/AnnotationContextMenu.js",
+    "histomicsui/web_client/views/popover/AnnotationPopover.js",
+    "histomicsui/web_client/views/popover/PixelmapContextMenu.js",
+    "histomicsui/web_client/views/popover/index.js",
+    "histomicsui/web_client/vue/components/AnnotationHistoryBrowser.vue",
+    "histomicsui/web_client/vue/components/AnnotationHistoryBrowserContainer.vue",
+    "histomicsui/web_client/vue/components/AnnotationHistoryGroup.vue",
+    "histomicsui/web_client/vue/components/ColorPickerInput.vue",
+    "histomicsui/web_client/vue/components/EditHeatmapOrGridData.vue",
+    "histomicsui/web_client/vue/components/EditHeatmapOrGridDataContainer.vue",
+    "tests/__init__.py",
+    "tests/datastore.py",
+    "tests/girder_utilities.py",
+    "tests/test_handlers.py",
+    "tests/test_hui_rest.py",
+    "tests/test_image_browse_endpoints.py",
+    "tests/test_load.py",
+    "tests/test_tcga.py",
+    "tests/test_web_client.py",
+    "tests/test_files/.histomicsui_config.yaml",
+    "tests/test_files/sample.anot",
+    "tests/test_files/sample.meta",
+    "tests/test_files/sample_girder_id.anot",
+    "tests/test_files/test_analysis_detection.xml",
+    "tests/test_files/test_analysis_features.xml",
+    "tests/web_client_specs/.eslintrc",
+    "tests/web_client_specs/analysisSpec.js",
+    "tests/web_client_specs/annotationSpec.js",
+    "tests/web_client_specs/girderUISpec.js",
+    "tests/web_client_specs/huiSpec.js",
+    "tests/web_client_specs/huiTest.js",
+    "tests/web_client_specs/itemSpec.js",
+    "tests/web_client_specs/metadataPanelSpec.js",
+    "tests/web_client_specs/metadataPlotSpec.js",
+    "tests/web_client_specs/overviewPanelSpec.js",
+    "tests/web_client_specs/panelLayoutSpec.js",
+    "tests/web_client_specs/pixelmapCategorySpec.js"
+  ]
+}

histomicsui-1.8.1.dev14/histomicsui.egg-info/scm_version.json

@@ -0,0 +1,8 @@
+{
+  "tag": "1.8.0",
+  "distance": 14,
+  "node": "g1743fd4ebf62f5161c0e7332baed839d5376c53b",
+  "dirty": false,
+  "branch": "master",
+  "node_date": "2026-07-06"
+}

{histomicsui-1.8.1.dev8 → histomicsui-1.8.1.dev14}/tests/web_client_specs/annotationSpec.js

@@ -884,6 +884,32 @@ girderTest.promise.done(function () {
                 }, 'annotation to toggle on');
             });
 
+            it('toggle visibility of all annotations in a group', function () {
+                var $group = $('.h-annotation-selector .h-annotation-group[data-group-name="Other"]');
+                var wasExpanded = $group.hasClass('h-group-expanded');
+
+                runs(function () {
+                    expect($group.find('.icon-eye.h-toggle-group-annotations').length).toBe(1);
+                    $group.find('.h-toggle-group-annotations').click();
+                });
+                waitsFor(function () {
+                    $group = $('.h-annotation-selector .h-annotation-group[data-group-name="Other"]');
+                    return $group.find('.icon-eye-off.h-toggle-group-annotations').length === 1 &&
+                           $group.find('.icon-eye.h-toggle-annotation').length === 0;
+                }, 'all annotations in group to hide');
+
+                runs(function () {
+                    // clicking the group toggle must not collapse/expand the group
+                    expect($group.hasClass('h-group-expanded')).toBe(wasExpanded);
+                    $group.find('.h-toggle-group-annotations').click();
+                });
+                waitsFor(function () {
+                    $group = $('.h-annotation-selector .h-annotation-group[data-group-name="Other"]');
+                    return $group.find('.icon-eye.h-toggle-group-annotations').length === 1 &&
+                           $group.find('.icon-eye-off.h-toggle-annotation').length === 0;
+                }, 'all annotations in group to show');
+            });
+
             it('select annotations by rect - no hits', function () {
                 var interactor = huiTest.geojsMap().interactor();
                 expect($('.h-annotation-select-by-region').length).toBe(1);