histomicsui 1.8.1.dev151__tar.gz → 1.8.1.dev153__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (81) hide show
  1. {histomicsui-1.8.1.dev151/histomicsui.egg-info → histomicsui-1.8.1.dev153}/PKG-INFO +14 -3
  2. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/README.rst +13 -2
  3. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153/histomicsui.egg-info}/PKG-INFO +14 -3
  4. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/.circleci/config.yml +0 -0
  5. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/.circleci/get_version.py +0 -0
  6. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/.circleci/publish_pypi.sh +0 -0
  7. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/.editorconfig +0 -0
  8. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/.git-blame-ignore-revs +0 -0
  9. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/.gitignore +0 -0
  10. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/.pre-commit-config.yaml +0 -0
  11. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/LICENSE +0 -0
  12. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/MANIFEST.in +0 -0
  13. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/NOTICE +0 -0
  14. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/codecov.yml +0 -0
  15. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/docs/config_options.rst +0 -0
  16. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/docs/controls.rst +0 -0
  17. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/docs/images/cut.gif +0 -0
  18. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/docs/images/difference.gif +0 -0
  19. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/docs/images/intersect.gif +0 -0
  20. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/docs/images/union.gif +0 -0
  21. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/docs/images/xor.gif +0 -0
  22. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/docs/slicer_cli_plugins.rst +0 -0
  23. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/histomicsui/__init__.py +0 -0
  24. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/histomicsui/constants.py +0 -0
  25. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/histomicsui/girder_worker_plugin.py +0 -0
  26. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/histomicsui/handlers.py +0 -0
  27. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/histomicsui/models/__init__.py +0 -0
  28. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/histomicsui/models/aperio.py +0 -0
  29. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/histomicsui/models/case.py +0 -0
  30. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/histomicsui/models/cohort.py +0 -0
  31. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/histomicsui/models/image.py +0 -0
  32. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/histomicsui/models/meta.py +0 -0
  33. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/histomicsui/models/pathology.py +0 -0
  34. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/histomicsui/models/slide.py +0 -0
  35. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/histomicsui/rest/__init__.py +0 -0
  36. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/histomicsui/rest/aperio.py +0 -0
  37. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/histomicsui/rest/hui_resource.py +0 -0
  38. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/histomicsui/rest/image_browse_resource.py +0 -0
  39. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/histomicsui/rest/system.py +0 -0
  40. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/histomicsui/rest/tcga.py +0 -0
  41. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/histomicsui.egg-info/SOURCES.txt +0 -0
  42. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/histomicsui.egg-info/dependency_links.txt +0 -0
  43. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/histomicsui.egg-info/entry_points.txt +0 -0
  44. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/histomicsui.egg-info/not-zip-safe +0 -0
  45. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/histomicsui.egg-info/requires.txt +0 -0
  46. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/histomicsui.egg-info/top_level.txt +0 -0
  47. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/pyproject.toml +0 -0
  48. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/requirements-dev.txt +0 -0
  49. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/ruff.toml +0 -0
  50. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/sample_data/Easy1.png +0 -0
  51. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/sample_data/sample_svs_image.TCGA-DU-6399-01A-01-TS1.e8eb65de-d63e-42db-af6f-14fefbbdf7bd.svs +0 -0
  52. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/setup.cfg +0 -0
  53. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/setup.py +0 -0
  54. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/__init__.py +0 -0
  55. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/conftest.py +0 -0
  56. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/datastore.py +0 -0
  57. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/girder_utilities.py +0 -0
  58. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/test_files/.histomicsui_config.yaml +0 -0
  59. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/test_files/sample.anot +0 -0
  60. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/test_files/sample.meta +0 -0
  61. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/test_files/sample_girder_id.anot +0 -0
  62. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/test_files/test_analysis_detection.xml +0 -0
  63. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/test_files/test_analysis_features.xml +0 -0
  64. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/test_handlers.py +0 -0
  65. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/test_hui_rest.py +0 -0
  66. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/test_image_browse_endpoints.py +0 -0
  67. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/test_load.py +0 -0
  68. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/test_tcga.py +0 -0
  69. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/web_client_specs/.eslintrc +0 -0
  70. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/web_client_specs/analysisSpec.js +0 -0
  71. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/web_client_specs/annotationSpec.js +0 -0
  72. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/web_client_specs/girderUISpec.js +0 -0
  73. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/web_client_specs/huiSpec.js +0 -0
  74. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/web_client_specs/huiTest.js +0 -0
  75. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/web_client_specs/itemSpec.js +0 -0
  76. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/web_client_specs/metadataPanelSpec.js +0 -0
  77. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/web_client_specs/metadataPlotSpec.js +0 -0
  78. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/web_client_specs/overviewPanelSpec.js +0 -0
  79. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/web_client_specs/panelLayoutSpec.js +0 -0
  80. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tests/web_client_specs/pixelmapCategorySpec.js +0 -0
  81. {histomicsui-1.8.1.dev151 → histomicsui-1.8.1.dev153}/tox.ini +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: histomicsui
3
- Version: 1.8.1.dev151
3
+ Version: 1.8.1.dev153
4
4
  Summary: Organize, visualize, and analyze histology images.
5
5
  Home-page: https://github.com/DigitalSlideArchive/histomicsui
6
6
  Author: Kitware, Inc.
@@ -136,9 +136,20 @@ The standard deployment of HistomicsUI is the `Digital Slide Archive`_. The ass
136
136
  Development
137
137
  ===========
138
138
 
139
- The most convenient way to develop on HistomicsUI is to use the `devops scripts from the Digital Slide Archive <https://github.com/DigitalSlideArchive/digital_slide_archive/tree/master/devops>`_.
139
+ The most convenient way to develop on HistomicsUI is in conjunction with the `Digital Slide Archive <https://github.com/DigitalSlideArchive/digital_slide_archive>`_. Once both repos have been cloned locally, mount your local HistomicsUI directory to the DSA docker container:
140
140
 
141
- If you are making changes to the HistomicsUI frontend, you can make Girder watch the source code and perform hot reloads on changes using the ``--watch-plugin`` argument to ``girder build``. See the `Girder docs <https://girder.readthedocs.io/en/stable/development.html#during-development>`_ for more information.
141
+ .. code-block:: bash
142
+
143
+ # /devops/ver5/docker-compose.local.yml
144
+ services:
145
+
146
+ girder:
147
+ volumes:
148
+ - ../../../HistomicsUI:/opt/HistomicsUI
149
+
150
+ Then use the `devops scripts from the Digital Slide Archive <https://github.com/DigitalSlideArchive/digital_slide_archive/tree/master/devops/ver5>`_.
151
+
152
+ If you are making changes to the HistomicsUI frontend, you can have the Girder instance watch the local HistomicsUI source code and perform hot reloads on changes by running ``npm run build`` then ``npm run watch`` from ``histomicsui/web_client/``. See the `Girder docs <https://girder.readthedocs.io/en/stable/development.html#during-development>`_ for more information.
142
153
 
143
154
  Annotations and Metadata from Jobs
144
155
  ----------------------------------
@@ -93,9 +93,20 @@ The standard deployment of HistomicsUI is the `Digital Slide Archive`_. The ass
93
93
  Development
94
94
  ===========
95
95
 
96
- The most convenient way to develop on HistomicsUI is to use the `devops scripts from the Digital Slide Archive <https://github.com/DigitalSlideArchive/digital_slide_archive/tree/master/devops>`_.
96
+ The most convenient way to develop on HistomicsUI is in conjunction with the `Digital Slide Archive <https://github.com/DigitalSlideArchive/digital_slide_archive>`_. Once both repos have been cloned locally, mount your local HistomicsUI directory to the DSA docker container:
97
97
 
98
- If you are making changes to the HistomicsUI frontend, you can make Girder watch the source code and perform hot reloads on changes using the ``--watch-plugin`` argument to ``girder build``. See the `Girder docs <https://girder.readthedocs.io/en/stable/development.html#during-development>`_ for more information.
98
+ .. code-block:: bash
99
+
100
+ # /devops/ver5/docker-compose.local.yml
101
+ services:
102
+
103
+ girder:
104
+ volumes:
105
+ - ../../../HistomicsUI:/opt/HistomicsUI
106
+
107
+ Then use the `devops scripts from the Digital Slide Archive <https://github.com/DigitalSlideArchive/digital_slide_archive/tree/master/devops/ver5>`_.
108
+
109
+ If you are making changes to the HistomicsUI frontend, you can have the Girder instance watch the local HistomicsUI source code and perform hot reloads on changes by running ``npm run build`` then ``npm run watch`` from ``histomicsui/web_client/``. See the `Girder docs <https://girder.readthedocs.io/en/stable/development.html#during-development>`_ for more information.
99
110
 
100
111
  Annotations and Metadata from Jobs
101
112
  ----------------------------------
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: histomicsui
3
- Version: 1.8.1.dev151
3
+ Version: 1.8.1.dev153
4
4
  Summary: Organize, visualize, and analyze histology images.
5
5
  Home-page: https://github.com/DigitalSlideArchive/histomicsui
6
6
  Author: Kitware, Inc.
@@ -136,9 +136,20 @@ The standard deployment of HistomicsUI is the `Digital Slide Archive`_. The ass
136
136
  Development
137
137
  ===========
138
138
 
139
- The most convenient way to develop on HistomicsUI is to use the `devops scripts from the Digital Slide Archive <https://github.com/DigitalSlideArchive/digital_slide_archive/tree/master/devops>`_.
139
+ The most convenient way to develop on HistomicsUI is in conjunction with the `Digital Slide Archive <https://github.com/DigitalSlideArchive/digital_slide_archive>`_. Once both repos have been cloned locally, mount your local HistomicsUI directory to the DSA docker container:
140
140
 
141
- If you are making changes to the HistomicsUI frontend, you can make Girder watch the source code and perform hot reloads on changes using the ``--watch-plugin`` argument to ``girder build``. See the `Girder docs <https://girder.readthedocs.io/en/stable/development.html#during-development>`_ for more information.
141
+ .. code-block:: bash
142
+
143
+ # /devops/ver5/docker-compose.local.yml
144
+ services:
145
+
146
+ girder:
147
+ volumes:
148
+ - ../../../HistomicsUI:/opt/HistomicsUI
149
+
150
+ Then use the `devops scripts from the Digital Slide Archive <https://github.com/DigitalSlideArchive/digital_slide_archive/tree/master/devops/ver5>`_.
151
+
152
+ If you are making changes to the HistomicsUI frontend, you can have the Girder instance watch the local HistomicsUI source code and perform hot reloads on changes by running ``npm run build`` then ``npm run watch`` from ``histomicsui/web_client/``. See the `Girder docs <https://girder.readthedocs.io/en/stable/development.html#during-development>`_ for more information.
142
153
 
143
154
  Annotations and Metadata from Jobs
144
155
  ----------------------------------