PyPI - histomicsui - Versions diffs - 1.5.1.dev24__tar.gz → 1.5.1.dev28__tar.gz - Mend

histomicsui 1.5.1.dev24tar.gz → 1.5.1.dev28tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (181) hide show

{histomicsui-1.5.1.dev24 → histomicsui-1.5.1.dev28}/PKG-INFO RENAMED Viewed

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: histomicsui
-Version: 1.5.1.dev24
+Version: 1.5.1.dev28
 Summary: Organize, visualize, and analyze histology images.
 Home-page: https://github.com/DigitalSlideArchive/histomicsui
 Author: Kitware, Inc.
@@ -26,9 +26,22 @@ Requires-Dist: cachetools
 Requires-Dist: orjson
 Provides-Extra: analysis
-=======================================
-HistomicsUI |build-status| |codecov-io|
-=======================================
+===========
+HistomicsUI
+===========
+|build-status| |codecov-io| |doi-badge|
+.. |build-status| image:: https://circleci.com/gh/DigitalSlideArchive/HistomicsUI.svg?style=svg
+    :target: https://circleci.com/gh/DigitalSlideArchive/HistomicsUI
+    :alt: Build Status
+.. |codecov-io| image:: https://img.shields.io/codecov/c/github/DigitalSlideArchive/HistomicsUI.svg
+    :target: https://codecov.io/github/DigitalSlideArchive/HistomicsUI?branch=master
+    :alt: codecov.io
+.. |doi-badge| image:: https://img.shields.io/badge/DOI-10.5281%2Fzenodo.5474914-blue.svg
+   :target: https://zenodo.org/doi/10.5281/zenodo.5474914
 Organize, visualize, and analyze histology images.
@@ -143,11 +156,3 @@ This work was funded in part by the NIH grant U24-CA194362-01_.
 .. _celery: http://www.celeryproject.org/
 .. _HistomicsTK: https://github.com/DigitalSlideArchive/HistomicsTK
 .. _Digital Slide Archive: https://github.com/DigitalSlideArchive/digital_slide_archive
-.. |build-status| image:: https://circleci.com/gh/DigitalSlideArchive/HistomicsUI.svg?style=svg
-    :target: https://circleci.com/gh/DigitalSlideArchive/HistomicsUI
-    :alt: Build Status
-.. |codecov-io| image:: https://img.shields.io/codecov/c/github/DigitalSlideArchive/HistomicsUI.svg
-    :target: https://codecov.io/github/DigitalSlideArchive/HistomicsUI?branch=master
-    :alt: codecov.io

{histomicsui-1.5.1.dev24 → histomicsui-1.5.1.dev28}/README.rst RENAMED Viewed

@@ -1,6 +1,19 @@
-=======================================
-HistomicsUI |build-status| |codecov-io|
-=======================================
+===========
+HistomicsUI
+===========
+|build-status| |codecov-io| |doi-badge|
+.. |build-status| image:: https://circleci.com/gh/DigitalSlideArchive/HistomicsUI.svg?style=svg
+    :target: https://circleci.com/gh/DigitalSlideArchive/HistomicsUI
+    :alt: Build Status
+.. |codecov-io| image:: https://img.shields.io/codecov/c/github/DigitalSlideArchive/HistomicsUI.svg
+    :target: https://codecov.io/github/DigitalSlideArchive/HistomicsUI?branch=master
+    :alt: codecov.io
+.. |doi-badge| image:: https://img.shields.io/badge/DOI-10.5281%2Fzenodo.5474914-blue.svg
+   :target: https://zenodo.org/doi/10.5281/zenodo.5474914
 Organize, visualize, and analyze histology images.
@@ -115,11 +128,3 @@ This work was funded in part by the NIH grant U24-CA194362-01_.
 .. _celery: http://www.celeryproject.org/
 .. _HistomicsTK: https://github.com/DigitalSlideArchive/HistomicsTK
 .. _Digital Slide Archive: https://github.com/DigitalSlideArchive/digital_slide_archive
-.. |build-status| image:: https://circleci.com/gh/DigitalSlideArchive/HistomicsUI.svg?style=svg
-    :target: https://circleci.com/gh/DigitalSlideArchive/HistomicsUI
-    :alt: Build Status
-.. |codecov-io| image:: https://img.shields.io/codecov/c/github/DigitalSlideArchive/HistomicsUI.svg
-    :target: https://codecov.io/github/DigitalSlideArchive/HistomicsUI?branch=master
-    :alt: codecov.io

{histomicsui-1.5.1.dev24 → histomicsui-1.5.1.dev28}/histomicsui/rest/system.py RENAMED Viewed

@@ -42,6 +42,8 @@ def addSystemEndpoints(apiRoot):
     apiRoot.item.route('GET', ('query',), getItemsByQuery)
     # Added to the folder route
     apiRoot.folder.route('GET', ('query',), getFoldersByQuery)
+    # Added to the file route
+    apiRoot.file.route('GET', ('query',), getFilesByQuery)
     # Added to the system route
     apiRoot.system.route('PUT', ('restart',), restartServer)
     apiRoot.system.route('GET', ('setting', 'default'), getSettingDefault)
@@ -193,6 +195,22 @@ def getItemsByQuery(self, query, limit, offset, sort):
     return Item().findWithPermissions(query, offset=offset, limit=limit, sort=sort, user=user)
+@access.admin(scope=TokenScope.DATA_READ)
+@filtermodel(model=File)
+@autoDescribeRoute(
+    Description('List files that match a query.')
+    .responseClass('File', array=True)
+    .jsonParam('query', 'Find files that match this Mongo query.',
+               required=True, requireObject=True)
+    .pagingParams(defaultSort='_id')
+    .errorResponse(),
+)
+@boundHandler()
+def getFilesByQuery(self, query, limit, offset, sort):
+    user = self.getCurrentUser()
+    return File().findWithPermissions(query, offset=offset, limit=limit, sort=sort, user=user)
 @access.public(scope=TokenScope.DATA_READ)
 @filtermodel(model=Folder)
 @autoDescribeRoute(

{histomicsui-1.5.1.dev24 → histomicsui-1.5.1.dev28}/histomicsui.egg-info/PKG-INFO RENAMED Viewed

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: histomicsui
-Version: 1.5.1.dev24
+Version: 1.5.1.dev28
 Summary: Organize, visualize, and analyze histology images.
 Home-page: https://github.com/DigitalSlideArchive/histomicsui
 Author: Kitware, Inc.
@@ -26,9 +26,22 @@ Requires-Dist: cachetools
 Requires-Dist: orjson
 Provides-Extra: analysis
-=======================================
-HistomicsUI |build-status| |codecov-io|
-=======================================
+===========
+HistomicsUI
+===========
+|build-status| |codecov-io| |doi-badge|
+.. |build-status| image:: https://circleci.com/gh/DigitalSlideArchive/HistomicsUI.svg?style=svg
+    :target: https://circleci.com/gh/DigitalSlideArchive/HistomicsUI
+    :alt: Build Status
+.. |codecov-io| image:: https://img.shields.io/codecov/c/github/DigitalSlideArchive/HistomicsUI.svg
+    :target: https://codecov.io/github/DigitalSlideArchive/HistomicsUI?branch=master
+    :alt: codecov.io
+.. |doi-badge| image:: https://img.shields.io/badge/DOI-10.5281%2Fzenodo.5474914-blue.svg
+   :target: https://zenodo.org/doi/10.5281/zenodo.5474914
 Organize, visualize, and analyze histology images.
@@ -143,11 +156,3 @@ This work was funded in part by the NIH grant U24-CA194362-01_.
 .. _celery: http://www.celeryproject.org/
 .. _HistomicsTK: https://github.com/DigitalSlideArchive/HistomicsTK
 .. _Digital Slide Archive: https://github.com/DigitalSlideArchive/digital_slide_archive
-.. |build-status| image:: https://circleci.com/gh/DigitalSlideArchive/HistomicsUI.svg?style=svg
-    :target: https://circleci.com/gh/DigitalSlideArchive/HistomicsUI
-    :alt: Build Status
-.. |codecov-io| image:: https://img.shields.io/codecov/c/github/DigitalSlideArchive/HistomicsUI.svg
-    :target: https://codecov.io/github/DigitalSlideArchive/HistomicsUI?branch=master
-    :alt: codecov.io

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